Three new species of Neonectria (Nectriaceae, Hypocreales) with notes on their phylogenetic positions

LITERATURE CITED

• Booth C. 1959. Studies of Pyrenomycetes IV. Nectria (1). Mycol Pap 73:1–115.
   Google Scholar
• ———. 1966. The genus Cylindrocarpon. Mycol Pap 104:1–56.
   Google Scholar
• Brayford D, Honda BM, Mantiri FR, Samuels GJ. 2004. Neonectria and Cylindrocarpon: the Nectria mammoidea group and species lacking microconidia. Mycologia 96: 572–597.
   Google Scholar
• ———, Samuels GJ. 1993. Some didymosporous species of Nectria with nonmicroconidial Cylindrocarpon anamorphs. Mycologia 85:612–637.
   Google Scholar
• Castlebury LA, Rossman AY, Hyten AS. 2006. Phylogenetic relationships of Neonectria/Cylindrocarpon on Fagus in North America. Can J Bot 84:1417–1433.
   Google Scholar
• Cunningham CW. 1997. Can three incongruence tests predict when data should be combined? Mol Biol Evol 14:733–740.
   Google Scholar
• Farris JS, Kallersjo M, Kluge AG, Bult C. 1995. Testing significance of incongruence. Cladistics 10:315–319.
   Google Scholar
• Gams W, Hoekstra ES, Aptroot A. 1998. CBS Course of Mycology. 4th ed. Baarn, the Netherlands: Centraal-bureau voor Schimmecultures. p 152–155.
   Google Scholar
• Glass NL, Donaldson GC. 1995. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Appl Environ Microb 48:1323–1330.
   Google Scholar
• Guu JR, Ju YM, Hsieh HJ. 2007. Nectriaceous fungi collected from forests in Taiwan. Bot Stud 48:187–203.
   Google Scholar
• Hall TA. 1999. Bioedit: a user-friendly biological sequences alignment editor analysis program for windows 95/98/NT. Nucl Acids Symp Ser 41:95–98.
   Google Scholar
• Halleen F, Schroers H, Groenewald JZ, Crous PW. 2004. Novel species of Cylindrocarpon (Neonectria) and Campylocarpon gen. nov. associated with black foot disease of grapevines (Vitis spp.). Stud Mycol 50:431–455.
   Google Scholar
• ———, ———, ———, Rego C, Crous PW. 2006. Neonectria liriodendri sp. nov., the main causal agent of black foot disease of grapevines. Stud Mycol 55:227–234.
   Google Scholar
• Hirooka Y, Kobayashi T. 2007. Taxonomic studies of nectrioid fungi in Japan I: the genus Neonectria. Mycoscience 48:53–62.
   Google Scholar
• ———, ———, Natsuaki KT. 2005. Neonectria castaneicola and Neo. rugulosa in Japan. Mycologia 97:1058–1066.
   Google Scholar
• ———, ———, ———, Aoki T. 2006. Neonectria amamiensis and Cylindrocarpon amamiense, a new nectrioid fungus and its sporodochial anamorph on Pinus luchuensis from Japan. Mycoscience 47:248–256.
   Google Scholar
• Langrell SR. 2005. Development of a nested PCR detection procedure for Nectria fuckeliana direct from Norway spruce bark extracts. FEMS Microbiol Lett 242:185–193.
   Google Scholar
• Lu B, Hyde KD, Ho WH, Tsui KM, Taylor JE, Wong KM, Yanna, Zhou D. 2000. Checklist of Hong Kong fungi. Fungal Diversity Series 5. Hong Kong: Fungal Diversity Press.
   Google Scholar
• Luo J, Zhuang WY. 2008. Two new species of Cosmospora (Nectriaceae, Hypocreales) from China. Fungal Diversity 31:83–93.
   Google Scholar
• Mantiri FR, Samuels GJ, Rahe JE, Honda BM. 2001. Phylogenetic relationships in Neonectria species having Cylindrocarpon anamorphs inferred from mitochondrial ribosomal DNA sequences. Can J Bot 79:334–340.
   Google Scholar
• O’Donnell K, Cigelnik E. 1997. Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Mol Phylogenet Evol 7:103–116.
   Google Scholar
• Ridgway R. 1912. Color standards and color nomenclature. Washington DC: Ridgway.
   Google Scholar
• Rossman AY, Samuels GJ, Rogerson CT, Lowen R. 1999. Genera of Bionectriaceae, Hypocreaceae and Nectriaceae (Hypocreales, Ascomycetes). Stud Mycol 42:1–248.
   Google Scholar
• Samuels GJ, Brayford D. 1990. Variation in Nectria radicicola and its anamorph, Cylindrocarpon destructans. Mycol Res 94:433–442.
   Google Scholar
• ———, ———. 1993. Phragmosporous Nectria species with Cylindrocarpon anamorphs. Sydowia 45:55–80.
   Google Scholar
• ———, ———. 1994. Species of Nectria (sensu lato) with red perithecia and striate ascospores. Sydowia 46:75–161.
   Google Scholar
• ———, Lu BS, Chaverri P, Candoussau F, Fournier J, Rossman AY. 2009. Cyanonectria, a new genus for Nectria cyanostoma and its Fusarium anamorph. Mycol Progress 8:49–58.
   Google Scholar
• Schroers HJ. 2001. A monograph of Bionectria (Ascomycota, Hypocreales, Bionectriaceae) and its Clonostachys anamorphs. Stud Mycol 46:1–214.
   Google Scholar
• ———, Žerjav M, Munda A, Halleen F, Crous PW. 2008. Cylindrocarpon pauciseptatum sp. nov., with notes on Cylindrocarpon species with wide, predominantly 3-septate macroconidia. Mycol Res 112:82–92.
   Google Scholar
• Seifert KA, McMullen CR, Yee D, Reeleder RD, Dobinson KF. 2003. Molecular differentiation and detection of ginseng-adapted isolates of the root rot fungus Cylindrocarpon destructans. Phytopathology 93:1533–1542.
   Google Scholar
• Stevens RB. 1981. Mycology guidebook. Mycological Society of America. Seattle: Univ Washington Press. p 651–656.
   Google Scholar
• Suga H, Hasegawa T, Mitsui H, Kageyama K, Hyakumachi M. 2000. Phylogenetic analysis of phytopathogenic fungus, Fusarium solani based on the rDNA-ITS region. Mycol Res 104:1175–1183.
   Google Scholar
• Swofford DL. 2002. PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4b10. Sunderland, Massachusetts: Sinauer Associates.
   Google Scholar
• Taylor JE, Hyde KD. 2003. Microfungi of tropical and temperate palms. Fungal Diversity Series 12. Hong Kong: Fungal Diversity Press. 459 p.
   Google Scholar
• Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgin DG. 1997. The Clustal X windows interface: flexible strategies for multiple sequences alignment aided by quality analysis tools. Nucl Acids Res 25:4876–4883.
   Google Scholar
• Wang L, Zhuang WY. 2004. Designing primer sets for amplification of partial calmodulin genes from penicillia. Mycosystema 23:466–473.
   Google Scholar
• White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Inns MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. New York: Academic Press. p 315–322.
   Google Scholar
• Wirsel SGR, Leibinger W, Ernst M, Mendgen KW. 2001. Genetic diversity of fungi closely associated with common reed. New Phytol 149:589–598.
   Google Scholar
• Wollenweber HD. 1916. Fusaria autographice delineata. Berlin: published by the author. p 1–501.
   Google Scholar
• Zhuang WY, Nong Y, Luo J. 2007. New species and new Chinese records of Bionectriaceae and Nectriaceae (Hypocreales, Ascomycetes) from Hubei, China. Fungal Diversity 24:347–357.
   Google Scholar
• Zhang XM, Zhuang WY. 2003. New species and new records of Bionectriaceae and Nectriaceae (Hypocreales) from China. Mycotaxon 88:343–347.
   Google Scholar