Endophoma, a new didymellaceous endoconidial genus from bat-cave soil

LITERATURE CITED

• AveskampMMde GruyterJCrousPW. 2008. Biology and recent developments in the systematics of Phoma, a complex genus of major quarantine significance. Fungal Divers 31:1–18.
   Web of Science ®Google Scholar
• AveskampMMde GruyterJWoudenbergJHCVerkleyGJMCrousPW. 2010. Highlights of the Didymellaceae: a polyphasic approach to characterize Phoma and related pleosporalean genera. Stud Mycol 65:1–60, 10.3114/sim.2010.65.01
   PubMed Web of Science ®Google Scholar
• AveskampMMVerkleyGJMde GruyterJMuraceMAPerelióAWoudenbergJHCGroenewaldJZCrousPW. 2009a. DNA phylogeny reveals polyphyly of Phoma section Peyronellaea and multiple taxonomic novelties. Mycologia 101:363–382, 10.3852/08-199
   PubMed Web of Science ®Google Scholar
• AveskampMMWoudenbergJFCde GruyterJTurcoEGroenewaldJZCrousPW. 2009b. Development of taxon-specific sequence characterized amplified region (SCAR) markers based on actin sequences and DNA amplification fingerprinting (DAF): a case study in the Phoma exigua species complex. Mol Plant Pathol 10: 403–414, 10.1111/j.1364-3703.2009.00540.x
   PubMed Web of Science ®Google Scholar
• BastianFAlabouvetteC. 2009. Lights and shadows on the conservation of a rock art cave: the case of Lascaux Cave. Int J Speleol 38:55–60.
   Web of Science ®Google Scholar
• BlehertDSHicksACBehrMMeteyerCUBerlowski-ZierBCBucklesELColemanJTHDarlingSRGaragasANiverROkoniewskiJCRuddRJStoneWB. 2009. Bat white-nose syndrome: an emerging fungal pathogen? Science 323:227, 10.1126/science.1163874
   PubMed Web of Science ®Google Scholar
• BoeremaGHBollenGJ. 1975. Conidiogenesis and conidial septation ads differentiating criteria between Phoma and Ascochyta. Persoonia 8:111–144.
   Google Scholar
• BoeremaGHde GruyterJNoordeloosMEHamersMEC. 2004. Phoma identification manual. Differentiation of specific and infra-specific taxa in culture. Wallingford, UK: CABI Publishing. 470 p.
   Google Scholar
• CastresanaJ. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17:540–552.
   PubMed Web of Science ®Google Scholar
• DaveyMLCurrahRS. 2009. Atradidymella muscivora gen. et sp. nov. (Pleosporales) and its anamorph Phoma muscivora sp. nov.: a new pleomorphic pathogen of boreal bryophytes. Am J Bot 96: 1281– 1288, 10.3732/ajb.0900010
   PubMed Web of Science ®Google Scholar
• de GruyterJAveskampMMWoudenbergJHCVerkleyGJMGroenewaldJZCrousPW. 2009. Molecular phylogeny of Phoma and allied anamorph genera: toward a reclassification of the Phoma complex. Mycol Res 113:508–519, 10.1016/j.mycres.2009.01.002
   PubMedGoogle Scholar
• de GruyterJWoudenbergJHCAveskampMMVerkleyGJMGroenewaldJZCrousPW. 2010. Systematic reappraisal of species in Phoma section Paraphoma, Pyrenochaeta and Pleurophoma. Mycologia 102: 1066– 1081, 10.3852/09-240
   PubMed Web of Science ®Google Scholar
• DupontJJacquetCDennetireBLacosteSBoustaFOrialGCuraudCCoulouxARoquebertMF. 2007. Invasion of the French Paleolithic painted cave of Lascaux by members of the Fusarium solani species complex. Mycologia 99:526–633, 10.3852/mycologia.99.4.526
   PubMed Web of Science ®Google Scholar
• GardesMBrunsTD. 1993. ITS primers with enhanced specificity for basidiomycetes—application to the identification of mycorrhizae and rusts. Mol Ecol 2:113–118, 10.1111/j.1365-294X.1993.tb00005.x
   PubMed Web of Science ®Google Scholar
• GrishkanINevoEWasserSP. 2004. Micromycetes fro mteh saline Arubotaim Cave: Mount Sedom, the Dead Sea southwestern shore, Israel. J Arid Environ 57:431–443, 10.1016/S0140-1963(03)00119-8
   Google Scholar
• GugnaniHCMuotoeokaforFAKaufmanLDupontB. 1994. A natural focus of Histoplasma capsulatum var duboisii is a bat cave. Mycopathologia 127:151–157, 10.1007/BF01102915
   Web of Science ®Google Scholar
• Gunde-CimermanNZalarPJeramS. 1998. Mycoflora of cave cricket Troglophilus neglectus cadavers. Mycopathologia 141:111–114, 10.1023/A:1006947524503
   Google Scholar
• HennebertGLSuttonBC. 1994. Unitary parameters in conidiogenesis. In: HawksworthDL, ed. Ascomycete systematics: problems and perspectives in the nineties. New York: Plenum Press. p 65–76.
   Google Scholar
• JohnPJ. 1976. Ultrastructure of conidium ontogeny in Phoma pomorum, Microsphaeropsis olivaceum and Coniothyrium fuckelii. Can J Bot 54:831–851, 10.1139/b76-087
   Google Scholar
• KatohKTohH. 2008. Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 9:286–298, 10.1093/bib/bbn013
   PubMed Web of Science ®Google Scholar
• KikuchiKSugitaTMakimuraKUrataKSomeyaTSasakiTKamelKNiimiMHiramatsuKUeharaY. 2008. Is Histoplasma capsulatum a native inhabitant of Japan? Microbiol Immunol 52:455–459, 10.1111/j.1348-0421.2008.00052.x
   Google Scholar
• KlebahnH. 1933. Über Bau und Konidienbildung bei einigen stromatischen Sphaeropsideen. Phytopath Z 6: 229–304.
   Google Scholar
• KoilrajAMarimuthuGNatarajanKSaravananSMaranPHsuMJ. 1999. Fungal diversity inside caves of southern India. Curr Sci 77:1081–1084.
   Google Scholar
• LyonGMBravoAVEspinoALindsleyMDGutierrezRERodriguezICorellaACarilloFMcNeilMMWarnockDWHajjehRA. 2004. Histoplasmosis associated with exploring a bat-inhabited cave in Costa Rica 1998–1999. Am J Trop Med Hyg 70:438–442.
   PubMed Web of Science ®Google Scholar
• MeekGA. 1976. Practical electron microscopy for biologists. London: Wiley-Interscience.
   Google Scholar
• MonteEGarcía-AchaI. 1988. Conidiogenesis in Phoma betae. Trans Br Mycol Soc 90:659–662, 10.1016/S0007-1536(88)80076-7
   Google Scholar
• MurrayMGThompsonWF. 1980. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8: 4321–4326, 10.1093/nar/8.19.4321
   PubMed Web of Science ®Google Scholar
• Nieves-RiveraAM. 2003. Mycological survey of Rio Camuy Caves Park, Puerto Rico. J Cave Karst Stud 65: 23–28.
   Web of Science ®Google Scholar
• Nieves-RiveraAMSantos-FloresCJDuganFMMillerTE. 2009. Guanophilic fungi in three caves of southwestern Puerto Rico. Int J Speleol 38:61–70.
   Google Scholar
• NovákováA. 2009a. Microscopic fungi isolated from the Domica Cave system (Slovak Karst National Park, Slovakia): a review. Int J Speleol 38:71–82.
   Web of Science ®Google Scholar
• NovákováA. 2009b. Pidoplitchkoviella terricola—an interesting fungus from the Domica Cave (Slovakia). Int J Speleol 38:23–26.
   Google Scholar
• NovákováAKolaříkM. 2010. Chrysosporium speluncarum, a new species resembling Ajellomyces encapsulatus, obtained from bat guano in caves of temperate Europe. Mycol Prog 9:253–260, 10.1007/s11557-009-0634-0
   Google Scholar
• O’DonnellKCigelnikE. 1997. Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Mol Phylogenet Evol 7:103–116, 10.1006/mpev.1996.0376
   PubMed Web of Science ®Google Scholar
• PosadaDCrandallKA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817–818, 10.1093/bioinformatics/14.9.817
   PubMed Web of Science ®Google Scholar
• RonquistFHuelsenbeckJP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574, 10.1093/bioinformatics/btg180
   PubMed Web of Science ®Google Scholar
• ShapiroJPringleA. 2010. Anthropogenic influences on the diversity of fungi isolated from caves in Kentucky and Tennessee. Am Midl Nat 163:76–86, 10.1674/0003-0031-163.1.76
   Web of Science ®Google Scholar
• StomeoFPortilloMCGonzalezJM. 2009. Assessment of bacterial and fungal growth on natural substrates: consequences for preserving caves with prehistoric paintings. Curr Microbiol 59:321–325, 10.1007/s00284-009-9437-4
   Google Scholar
• SuttonBC. 1964. Phoma and related genera. Trans Br Mycol Soc 47:497–509, 10.1016/S0007-1536(64) 80028-0
   Google Scholar
• TsunedaAChenMCurrahRS. 2001. Conidiomatal morphogenesis and pleomorphic conidiogenesis in Scleroconidioma sphagnicola. Mycologia 93:1164–1173, 10.2307/3761676
   Web of Science ®Google Scholar
• TsunedaAHambletonSCurrahRS. 2004a. Morphology and phylogenetic placement of Endoconidioma, a new endoconidial genus from trembling aspen. Mycologia 96:1126–1133.
   Google Scholar
• TsunedaAHambletonSCurrahRS. 2010. Endoconidioma populi from aspen and alder: phylogeny, and variations in cleistopycnidial morphology and their ecological implications. Botany 88:675–684, 10.1139/B10-043
   Web of Science ®Google Scholar
• TsunedaAMurakamiS. 1985. Endoconidium development and release in the Hyphomycete Phaeotheca fissurella. Mycologia 77:433–440, 10.2307/3793200
   Web of Science ®Google Scholar
• TsunedaATsunedaICurrahRS. 2004b. Endoconidiogenesis in Endoconidioma populi and Phaeotheca fissurella. Mycologia 96:1134–1140.
   Google Scholar
• VilgalysRHesterM. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4238–4246.
   PubMed Web of Science ®Google Scholar
• WhiteTJBrunsTLeeSTaylorJ. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: MichaelAJGelfandDHSninskyJJWhiteTJ, eds. PCR protocols: a guide to the methods and applications. New York: Academic Press. p 315–322.
   Google Scholar
• ZwicklDJ. 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion [doctoral dissertation]. Austin: Univ Texas Press. 115 p.
   Google Scholar