339
Views
0
CrossRef citations to date
0
Altmetric
Original Articles

Ancestral state reconstruction infers phytopathogenic origins of sooty blotch and flyspeck fungi on apple

, , , , , & show all
Pages 292-302 | Received 28 Feb 2015, Accepted 07 Nov 2015, Published online: 20 Jan 2017

Literature cited

  • ArzanlouMGroenewaldJZGamsWBraunUShinH-DCrousPW. 2007. Phylogenetic and morphotaxonomic revision of Ramichloridium and allied genera. Stud Mycol 858:57–93, doi:10.3114/sim.2007.58.03
  • BatzerJCDíaz AriasMMHarringtonTCGleasonMLGroenewaldJZCrousPW. 2008. Four species of Zygophiala (Schizothyriaceae, Capnodiales) are associated with the sooty blotch and flyspeck complex on apple. Mycologia 100:246–258, doi:10.3852/mycologia.100.2.246
  • BatzerJCGleasonMLHarringtonTCTiffanyLH. 2005. Expansion of the sooty blotch and flyspeck complex on apples based on analysis of ribosomal DNA gene sequences and morphology. Mycologia 97:1268–1286, doi:10.3852/mycologia.97.6.1268
  • BeldingRDSuttonTBBlankenshipSMYoungE. 2000. Relationship between apple fruit epicuticular wax and growth of Peltaster fructicola and Leptodontium elatius, two fungi that cause sooty blotch disease. Plant Dis 84: 767–772, doi:10.1094/PDIS.2000.84.7.767
  • BinderMHibbettDS. 2006. Molecular systematics and biological diversification of Boletales. Mycologia 98: 971–981, doi:10.3852/mycologia.98.6.971
  • CrousPWBraunUGroenewaldJZ. 2007a. Mycosphaerella is polyphyletic. Stud Mycol 58:1–32, doi:10.3114/sim.2007.58.01
  • CrousPWGroenewaldJZMansillaJPHunterGCWingfieldMJ. 2004. Phylogenetic reassessment of Mycosphaerella spp. and their anamorphs occurring on Eucalyptus. Stud Mycol 50:195–214.
  • CrousPWSchochCLHydeKWoodARGueidanCde HoogGSGroenewaldJZ. 2009. Phylogenetic lineages in the Capnodiales. Stud Mycol 64:17–47, doi:10.3114/sim.2009.64.02
  • CrousPWSummerallBACarnegieAJMohammedCHimamanWGoenewaldJZ. 2007b. Foliicolus Mycosphaerella spp. and their anamorphs on Corymbia and Eucalyptus. Fungal Divers 26:143–185.
  • de HoogGSvan OorchotCANHijwegenT. 1983. Taxonomy of the Dactylaria complex II. Proceedings of the Koninklijke Nederlandse Akademie van Wetenschappen, Series C 86:197–206.
  • Díaz AriasMMBatzerJCHarringtonTCWongAWBostSCCooleyDREllisMAHartmanJRRosenbergerDASundinGWSuttonTBTravisJWWheelerMJYoderKSGleasonML. 2010. Diversity and biogeography of sooty blotch and flyspeck fungi on apple in the eastern and midwestern United States. Phytopathology 100:345–355.
  • DrummondAJRambautA. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7:214, doi:10.1186/1471-2148-7-214
  • EkmanSAndersenHLWedinM. 2008. The limitations of ancestral state reconstruction and the evolution of the ascus in the Lecanorales (lichenized Ascomycota). Syst Biol 57:141–156, doi:10.1080/10635150801910451
  • FellJWBoekhoutTFonsecaAScorzettiGStatzell-TallmanA. 2000. Biodiversity and systematics of basidiomycetous yeasts as determined by large-subunit rDNA D1/D2 domain sequence analysis. Int J Syst Evol Microbiol 50:1351–1371, doi:10.1099/00207713-50-3-1351
  • GamsWHoekstraESAptrootA, eds. 1998. CBS course of mycology. 4th ed. Centraalbureau voor Schimmelcultures, Baarn, Delft, The Netherlands.
  • GleasonMLBatzerJCSunGYZhangRDíazMMSuttonTBCrousPWIvanovićMMcManusPSCooleyDRMayrUWeberRWSYoderKSDel PonteEMBiggsAROertelB. 2011. A new view of sooty blotch and flyspeck. Plant Dis 95:363–383, doi:10.1094/PDIS-08-10-0590
  • GregorySGDonRRAriadnaB. 2007. The patchiness of epifoliar fungi in tropical forests: host range, host abundance and environment. Ecology 88:575–581, doi:10.1890/05-1170
  • GueidanCRouxCLutzoniF. 2007. Using a multigene phylogenetic analysis to assess generic delineation and character evolution in Verrucariaceae (Verrucariales, Ascomycota). Mycol Res 111:1145–1168, doi:10.1016/j.mycres.2007.08.010
  • HallTA. 1999. BioEdit: a user-friendly biologically sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98.
  • HuelsenbeckJPBollbackJP. 2001. Empirical and hierarchical Bayesian estimation of ancestral states. Syst Biol 50:351–366, doi:10.1080/106351501300317978
  • HuelsenbeckJPLargetBSwoffordD. 2000. A compound poisson process for relaxing the molecular clock. Genetics 154:1879–1892.
  • HunterGCWingfieldBDCrousPWWingfieldMJ. 2006. A multigene phylogeny for species of Mycosphaerella occurring on Eucalyptus leaves. Stud Mycol 55: 147–161, doi:10.3114/sim.55.1.147
  • JamesTYKauffFSchochCLMathenyPBHofstetterVCoxCJ. 2006. Reconstructing the early evolution of fungi using a six-gene phylogeny. Nature 443:818–822.
  • KassRERafteryAE. 1995. Bayes factors. J Am Stat Assoc 90:791, doi:10.1038/nature05110
  • KatohKKumaKTohHMiyataT. 2005. MAFFT 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33:511–518, doi:10.1093/nar/gki198
  • LiHYSunGYZhaiXRBatzerJCMayfieldDACrousPWGroenewaldJZGleasonML. 2012. Dissoconiaceae associated with sooty blotch and flyspeck on fruits in China and the United States. Persoonia 28:113–125.
  • LiuYJHallBD. 2004. Body plan evolution of ascomycetes, as inferred from an RNA polymerase II phylogeny. Proc Natl Acad Sci USA 101:4507–4512, doi:10.1073/pnas.0400938101
  • LiuYJWhelenSHallBD. 1999. Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit. Mol Biol Evol 16:1799–1808, doi:10.1093/oxfordjournals.molbev.a026092
  • LutzoniFKauffFCoxCJMcLaughlinDCelioGDetingerB. 2004. Assembling the fungal tree of life: progress, classification and evolution of subcellular traits. Am J Bot 91:1446–1480.
  • LutzoniFPagelMReebV. 2001. Major fungal lineages are derived from lichen symbiotic ancestors. Nature 411:937–940, doi:10.3732/ajb.91.10.1446
  • MayfieldDAKarakayaABatzerJCBlaserJMGleasonML. 2012. Diversity of sooty blotch and flyspeck fungi from apples in northeastern Turkey. Eur J Plant Pathol 135:805–815, doi:10.1007/s10658-012-0123-1
  • OliverRPSolomonPS. 2010. New development in pathogenicity and virulence of necrotrophs. Curr Opin Plant Biol 13:415–419, doi:10.1016/j.pbi.2010.05.003
  • PagelM. 1999. Inferring the historical patterns of biological evolution. Nature 401:877–884, doi:10.1038/44766
  • PagelMMeadeA. 2006. Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo. Am Nat 167:808–825, doi:10.1086/503444
  • PagelMMeadeABarkerD. 2004. Bayesian estimation of ancestral character states on phylogenies. Syst Biol 53:673–684, doi:10.1080/10635150490522232
  • QuaedvliegWBinderMGroenwaldJZSummerellBACarnegieAJBurgessTICrousPW. 2014. Introducing the consolidated species concept to resolve species in the Teratosphaeriaceae. Persoonia 33:1–40.
  • RonquistF. 2004. Bayesian inference of character evolution. Trends Ecol Evol 19:475–481.
  • RonquistFHuelsenbeckJP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574, doi:10.1093/bioinformatics/btg180
  • SchochCLSeifertKAHuhndorfSRobertVSpougeJLLevesqueCAChenW. 2012. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proc Natl Acad Sci USA 109:6241–6246.
  • SchochCLShoemakerRASeifertKAHambletonSSpataforaJWCrousPW. 2006. A multigene phylogeny of the Dothideomycetes using four nuclear loci. Mycologia 98:1041–1052, doi:10.1073/pnas.1117018109
  • ScorzettiGFellJWFonsecaAStatzell-TallmanA. 2002. Systematics of basidiomycetous yeasts: a comparison of large subunit D1/D2 and internal transcribed spacer rDNA regions. FEMS Yeast Res 2:495–517, doi:10.1111/j.1567-1364.2002.tb00117.x
  • StergiopoulosIde WitPJGM. 2009. Fungal effector proteins. Ann Rev Phytopathol 47:233–263, doi:10.1146/annurev.phyto.112408.132637
  • SuttonTBBondJJOcamb-BasuCM. 1998. Reservoir hosts of Schizothyrium pomi, cause of flyspeck of apple in North Carolina. Plant Dis 72:801, doi:10.1094/PD-72-0801B
  • VilgalysRHesterM. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172: 4238.
  • WilliamsonSMSuttonTB. 2000. Sooty blotch and flyspeck of apple: Etiology, biology and control. Plant Dis 84: 717–724, doi:10.1094/PDIS.2000.84.7.714

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.