Positional changes of a pluripotency marker gene during structural reorganization of fibroblast nuclei in cloned early bovine embryos

References

• Tadros W, Lipshitz HD. The maternal-to-zygotic transition: a play in two acts. Development 2009; 136:3033-42; PMID:19700615; http://dx.doi.org/10.1242/dev.033183
   PubMed Web of Science ®Google Scholar
• Li L, Lu X, Dean J. The maternal to zygotic transition in mammals. Mol Aspects Med 2013; 34:919-38; PMID:23352575; http://dx.doi.org/10.1016/j.mam.2013.01.003
   PubMed Web of Science ®Google Scholar
• Graf A, Krebs S, Zakhartchenko V, Schwalb B, Blum H, Wolf E. Fine mapping of genome activation in bovine embryos by RNA sequencing. Proc Natl Acad Sci U S A 2014; 111:4139-44; PMID:24591639; http://dx.doi.org/10.1073/pnas.1321569111
   PubMedGoogle Scholar
• Kanka J, Kepkova K, Nemcova L. Gene expression during minor genome activation in preimplantation bovine development. Theriogenology 2009; 72:572-83; PMID:19501393; http://dx.doi.org/10.1016/j.theriogenology.2009.04.014
   PubMedGoogle Scholar
• Aguirre-Lavin T, Adenot P, Bonnet-Garnier A, Lehmann G, Fleurot R, Boulesteix C, Debey P, Beaujean N. 3D-FISH analysis of embryonic nuclei in mouse highlights several abrupt changes of nuclear organization during preimplantation development. BMC Dev Biol 2012; 12:30; PMID:23095683; http://dx.doi.org/10.1186/1471-213X-12-30
   PubMedGoogle Scholar
• Brero A, Hao R, Schieker M, Wierer M, Wolf E, Cremer T, Zakhartchenko V. Reprogramming of active and repressive histone modifications following nuclear transfer with rabbit mesenchymal stem cells and adult fibroblasts. Cloning Stem Cells 2009; 11:319-29; PMID:19508112; http://dx.doi.org/10.1089/clo.2008.0083
   PubMedGoogle Scholar
• Cremer T, Zakhartchenko V. Nuclear architecture in developmental biology and cell specialisation. Reprod Fertil Dev 2011; 23:94-106; PMID:21366985; http://dx.doi.org/10.1071/RD10249
   PubMed Web of Science ®Google Scholar
• Koehler D, Zakhartchenko V, Froenicke L, Stone G, Stanyon R, Wolf E, Cremer T, Brero A. Changes of higher order chromatin arrangements during major genome activation in bovine preimplantation embryos. Exp Cell Res 2009; 315:2053-63; PMID:19254712; http://dx.doi.org/10.1016/j.yexcr.2009.02.016
   PubMedGoogle Scholar
• Koehler D, Zakhartchenko V, Ketterl N, Wolf E, Cremer T, Brero A. FISH on 3D preserved bovine and murine preimplantation embryos. Methods Mol Biol 2010; 659:437-45; PMID:20809333; http://dx.doi.org/10.1007/978-1-60761-789-1_34
   PubMedGoogle Scholar
• Merico V, Barbieri J, Zuccotti M, Joffe B, Cremer T, Redi CA, Solovei I, Garagna S. Epigenomic differentiation in mouse preimplantation nuclei of biparental, parthenote and cloned embryos. Chromosome Res 2007; 15:341-60; PMID:17447149
   PubMed Web of Science ®Google Scholar
• Popken J, Brero A, Koehler D, Schmid VJ, Strauss A, Wuensch A, Guengoer T, Graf A, Krebs S, Blum H, et al. Reprogramming of fibroblast nuclei in cloned bovine embryos involves major structural remodeling with both striking similarities and differences to nuclear phenotypes of in vitro fertilized embryos. Nucleus 2014; 5:xx-xx. http://dx.doi.org/10.4161/19491034.2014.979712.
   Google Scholar
• Bridger JM. Chromobility: the rapid movement of chromosomes in interphase nuclei. Biochem Soc Trans 2011; 39:1747-51; PMID:22103519; http://dx.doi.org/10.1042/BST20110696
   PubMed Web of Science ®Google Scholar
• Mehta IS, Eskiw CH, Arican HD, Kill IR, Bridger JM. Farnesyltransferase inhibitor treatment restores chromosome territory positions and active chromosome dynamics in Hutchinson-Gilford progeria syndrome cells. Genome Biol 2011; 12:R74; PMID:21838864; http://dx.doi.org/10.1186/gb-2011-12-8-r74
   PubMedGoogle Scholar
• Solovei I, Kreysing M, Lanctot C, Kosem S, Peichl L, Cremer T, Guck J, Joffe B. Nuclear architecture of rod photoreceptor cells adapts to vision in mammalian evolution. Cell 2009; 137:356-68; PMID:19379699; http://dx.doi.org/10.1016/j.cell.2009.01.052
   PubMed Web of Science ®Google Scholar
• Gondor A, Ohlsson R. Chromosome crosstalk in three dimensions. Nature 2009; 461:212-7; PMID:19741702; http://dx.doi.org/10.1038/nature08453
   PubMed Web of Science ®Google Scholar
• Shi W, Zakhartchenko V, Wolf E. Epigenetic reprogramming in mammalian nuclear transfer. Differentiation 2003; 71:91-113; PMID:12641564; http://dx.doi.org/10.1046/j.1432-0436.2003.710201.x
   PubMedGoogle Scholar
• Wuensch A, Habermann FA, Kurosaka S, Klose R, Zakhartchenko V, Reichenbach HD, Sinowatz F, McLaughlin KJ, Wolf E. Quantitative monitoring of pluripotency gene activation after somatic cloning in cattle. Biol Reprod 2007; 76:983-91.; PMID:17314316; http://dx.doi.org/10.1095/biolreprod.106.058776
   PubMedGoogle Scholar
• Niwa H, Miyazaki J, Smith AG. Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells. Nat Genet 2000; 24:372-6; PMID:10742100; http://dx.doi.org/10.1038/74199
   PubMed Web of Science ®Google Scholar
• Yoshimizu T, Sugiyama N, De Felice M, Yeom YI, Ohbo K, Masuko K, Obinata M, Abe K, Scholer HR, Matsui Y. Germline-specific expression of the Oct-4/green fluorescent protein (GFP) transgene in mice. Dev Growth Differ 1999; 41:675-84; PMID:10646797; http://dx.doi.org/10.1046/j.1440-169x.1999.00474.x
   PubMed Web of Science ®Google Scholar
• Cremer T, Cremer M. Chromosome territories. Cold Spring Harb Perspect Biol 2010; 2:a003889; PMID:20300217; http://dx.doi.org/10.1101/cshperspect.a003889
   PubMed Web of Science ®Google Scholar
• Smeets D, Markaki Y, Schmid VJ, Kraus F, Tattermusch A, Cerase A, Sterr M, Fiedler S, Demmerle J, Popken J, et al. Three-dimensional super-resolution microscopy of the inactive X chromosome territory reveals a collapse of its active nuclear compartment harboring distinct Xist RNA foci. Epigenetics Chromatin 2014; 7:8; PMID:25057298; http://dx.doi.org/10.1186/1756-8935-7-8
   PubMed Web of Science ®Google Scholar
• Bolzer A, Kreth G, Solovei I, Koehler D, Saracoglu K, Fauth C, Muller S, Eils R, Cremer C, Speicher MR, et al. Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes. PLoS Biol 2005; 3:e157; PMID:15839726; http://dx.doi.org/10.1371/journal.pbio.0030157
   PubMed Web of Science ®Google Scholar
• Kupper K, Kolbl A, Biener D, Dittrich S, von Hase J, Thormeyer T, Fiegler H, Carter NP, Speicher MR, Cremer T, et al. Radial chromatin positioning is shaped by local gene density, not by gene expression. Chromosoma 2007; 116:285-306; PMID:17333233; http://dx.doi.org/10.1007/s00412-007-0098-4
   PubMedGoogle Scholar
• Kolbl AC, Weigl D, Mulaw M, Thormeyer T, Bohlander SK, Cremer T, Dietzel S. The radial nuclear positioning of genes correlates with features of megabase-sized chromatin domains. Chromosome Res 2012; 20:735-52; PMID:23053570; http://dx.doi.org/10.1007/s10577-012-9309-9
   PubMed Web of Science ®Google Scholar
• Demyda-Peyras S, Dorado J, Hidalgo M, Anter J, De Luca L, Genero E, Moreno-Millan M. Effects of oocyte quality, incubation time and maturation environment on the number of chromosomal abnormalities in IVF-derived early bovine embryos. Reprod Fertil Dev 2013; 25:1077-84; PMID:23182337; http://dx.doi.org/10.1071/RD12140
   PubMedGoogle Scholar
• Viuff D, Rickords L, Offenberg H, Hyttel P, Avery B, Greve T, Olsaker I, Williams JL, Callesen H, Thomsen PD. A high proportion of bovine blastocysts produced in vitro are mixoploid. Biol Reprod 1999; 60:1273-8; PMID:10330080; http://dx.doi.org/10.1095/biolreprod60.6.1273
   PubMed Web of Science ®Google Scholar
• Terashita Y, Yamagata K, Tokoro M, Itoi F, Wakayama S, Li C, Sato E, Tanemura K, Wakayama T. Latrunculin A treatment prevents abnormal chromosome segregation for successful development of cloned embryos. PloS One 2013; 8:e78380; PMID:24205216; http://dx.doi.org/10.1371/journal.pone.0078380
   PubMedGoogle Scholar
• Mertzanidou A, Wilton L, Cheng J, Spits C, Vanneste E, Moreau Y, Vermeesch JR, Sermon K. Microarray analysis reveals abnormal chromosomal complements in over 70% of 14 normally developing human embryos. Hum Reprod 2013; 28:256-64; PMID:23054067; http://dx.doi.org/10.1093/humrep/des362
   PubMed Web of Science ®Google Scholar
• Sawicki JA, Magnuson T, Epstein CJ. Evidence for expression of the paternal genome in the two-cell mouse embryo. Nature 1981; 294:450-1; PMID:6171732; http://dx.doi.org/10.1038/294450a0
   PubMedGoogle Scholar
• Koehler D. Cloning in Cattle: Nuclear architecture and epigenetic status of chromatin during reprogramming of donor cell nuclei. Munich: Ludwig-Maximilians-University; 2009. Available from http:/edoc.ub.uni-muenchen.de1487;99151487
   Google Scholar
• Burkin DJ, O'Brien PC, Broad TE, Hill DF, Jones CA, Wienberg J, Ferguson-Smith MA. Isolation of chromosome-specific paints from high-resolution flow karyotypes of the sheep (Ovis aries). Chromosome Res 1997; 5:102-8; PMID:9146913; http://dx.doi.org/10.1023/A:1018414123751
   PubMedGoogle Scholar
• Ansari HA, Bosma AA, Broad TE, Bunch TD, Long SE, Maher DW, Pearce PD, Popescu CP. Standard G-, Q-, and R-banded ideograms of the domestic sheep (Ovis aries): homology with cattle (Bos taurus). Report of the committee for the standardization of the sheep karyotype. Cytogenet Cell Genet 1999; 87:134-42; PMID:10640834; http://dx.doi.org/10.1159/000015380
   PubMedGoogle Scholar
• Singer MF. Highly repeated sequences in mammalian genomes. Int Rev Cytol 1982; 76:67-112; PMID:6749748; http://dx.doi.org/10.1016/S0074-7696(08)61789-1
   PubMed Web of Science ®Google Scholar
• Adega F, Chaves R, Guedes-Pinto H, Heslop-Harrison JS. Physical organization of the 1.709 satellite IV DNA family in Bovini and Tragelaphini tribes of the Bovidae: sequence and chromosomal evolution. Cytogenet Genome Res 2006; 114:140-6; PMID:16825766; http://dx.doi.org/10.1159/000093330
   PubMed Web of Science ®Google Scholar
• Cremer M, Grasser F, Lanctot C, Muller S, Neusser M, Zinner R, Solovei I, Cremer T. Multicolor 3D fluorescence in situ hybridization for imaging interphase chromosomes. Methods Mol Biol 2008; 463:205-39; PMID:18951171; http://dx.doi.org/10.1007/978-1-59745-406-3_15
   PubMedGoogle Scholar
• Bó G, Mapletoft R. Evaluation and classification of bovine embryos. Anim Reprod 2013; 10:344-8.
   Web of Science ®Google Scholar
• Albiez H, Cremer M, Tiberi C, Vecchio L, Schermelleh L, Dittrich S, Kupper K, Joffe B, Thormeyer T, von Hase J, et al. Chromatin domains and the interchromatin compartment form structurally defined and functionally interacting nuclear networks. Chromosome Res 2006; 14:707-33; PMID:17115328; http://dx.doi.org/10.1007/s10577-006-1086-x
   PubMed Web of Science ®Google Scholar