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S. pombe replication protein Cdc18 (Cdc6) interacts with Swi6 (HP1) heterochromatin protein

Region specific effects and replication timing in the centromere

Pages 323-336 | Accepted 20 Dec 2010, Published online: 15 Jan 2011

References

  • Kelly TJ, Brown GW. Regulation of chromosome replication. Annu Rev Biochem 2000; 69:829 - 880
  • Forsburg SL. Eukaryotic MCM proteins: Beyond replication initiation. Microbiol Mol Biol Rev 2004; 68:109 - 131
  • Smith JG, Caddle MS, Bulboaca GH, Wohlgemuth JG, Baum M, Clarke L, et al. Replication of centromere II of Schizosaccharomyces pombe. Mol Cell Biol 1995; 15:5165 - 5172
  • Kim SM, Dubey DD, Huberman JA. Early-replicating heterochromatin. Genes Dev 2003; 17:330 - 335
  • Heichinger C, Penkett CJ, Bahler J, Nurse P. Genome-wide characterization of fission yeast DNA replication origins. EMBO J 2006; 25:5171 - 5179
  • Hayashi M, Katou Y, Itoh T, Tazumi A, Yamada Y, Takahashi T, et al. Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast. EMBO J 2007; 26:1327 - 1339 Epub 2007 Feb 15
  • Allshire RC, Karpen GH. Epigenetic regulation of centromeric chromatin: Old dogs, new tricks?. Nat Rev Genet 2008; 9:923 - 937
  • Grewal SI, Jia S. Heterochromatin revisited. Nat Rev Genet 2007; 8:35 - 46
  • Eissenberg JC, Elgin SC. The HP1 protein family: getting a grip on chromatin. Curr Opin Genet Dev 2000; 10:204 - 210
  • Lechner MS, Schultz DC, Negorev D, Maul GG, Rauscher FJ 3rd. The mammalian heterochromatin protein 1 binds diverse nuclear proteins through a common motif that targets the chromoshadow domain. Biochem Biophys Res Commun 2005; 331:929 - 937
  • Thiru A, Nietlispach D, Mott HR, Okuwaki M, Lyon D, Nielsen PR, et al. Structural basis of HP1/PXVXL motif peptide interactions and HP1 localisation to heterochromatin. EMBO J 2004; 23:489 - 499
  • Cowieson NP, Partridge JF, Allshire RC, McLaughlin PJ. Dimerisation of a chromo shadow domain and distinctions from the chromodomain as revealed by structural analysis. Curr Biol 2000; 10:517 - 525
  • Brasher SV, Smith BO, Fogh RH, Nietlispach D, Thiru A, Nielsen PR, et al. The structure of mouse HP1 suggests a unique mode of single peptide recognition by the shadow chromo domain dimer. EMBO J 2000; 19:1587 - 1597
  • Bernard P, Maure JF, Partridge JF, Genier S, Javerzat JP, Allshire RC. Requirement of heterochromatin for cohesion at centromeres. Science (Washington DC) 2001; 294:2539 - 2542
  • Nonaka N, Kitajima T, Shihori Y, Xiao G, Yamamoto M, Grewal SI, et al. Recruitment of cohesin to heterochromatic regions by Swi6/HP1 in fission yeast. Nat Cell Biol 2002; 4:89 - 93
  • Ekwall K, Javerzat JP, Lorentz A, Schmidt H, Cranston G, Allshire R. The chromodomain protein SWi6: A key component at Fission yeast centromeres. Science (Washington DC) 1995; 269:1429 - 1431
  • Pidoux AL, Allshire RC. Kinetochore and heterochromatin domains of the fission yeast centromere. Chromosome Research 2004; 12:521 - 534
  • Fischle W, Tseng BS, Dormann HL, Ueberheide BM, Garcia BA, Shabanowitz J, et al. Regulation of HP1-chromatin binding by histone H3 methylation and phosphorylation. Nature 2005; 438:1116 - 1122
  • Hirota T, Lipp JJ, Toh BH, Peters JM. Histone H3 serine 10 phosphorylation by Aurora B causes HP1 dissociation from heterochromatin. Nature 2005; 438:1176 - 1180
  • Chen ES, Zhang K, Nicolas E, Cam HP, Zofall M, Grewal SI. Cell cycle control of centromeric repeat transcription and heterochromatin assembly. Nature 2008; 451:734 - 737
  • Kloc A, Zaratiegui M, Nora E, Martienssen R. RNA interference guides histone modification during the S phase of chromosomal replication. Curr Biol 2008; 18:490 - 495
  • Pak DTS, Pflumm M, Chesnokov I, Huang DW, Kellum R, Marr J, et al. Association of the origin recognition complex with heterochromatin and HP1 in higher eukaryotes. Cell 1997; 91:311 - 323
  • Shareef MM, King C, Damaj M, Badagu R, Huang DW, Kellum R. Drosophila heterochromatin protein 1 (HP1)/origin recognition complex (ORC) protein is associated with HP1 and ORC and functions in heterochromatin-induced silencing. Mol Biol Cell 2001; 12:1671 - 1685
  • Badugu R, Shareef MM, Kellum R. Novel Drosophila heterochromatin protein 1 (HP1)/origin recognition complex-associated protein (HOAP) repeat motif in HP1/HOAP interactions and chromocenter associations. J Biol Chem 2003; 278:34491 - 34498
  • Huang DW, Fanti L, Pak DTS, Botchan MR, Pimpinelli S, Kellum R. Distinct cytoplasmic and nuclear fractions of Drosophila heterochromatin protein 1: Their phosphorylation levels and associations with origin recognition complex proteins. J Cell Biol 1998; 142:307 - 318
  • Auth T, Kunkel E, Grummt F. Interaction between HP1alpha and replication proteins in mammalian cells. Exp Cell Res 2006; 312:3349 - 3359
  • Quivy JP, Roche D, Kirschner D, Tagami H, Nakatani Y, Almouzni G. A CAF-1 dependent pool of HP1 during heterochromatin duplication. EMBO J 2004; 23:3516 - 3526
  • Murzina N, Verreault A, Laue E, Stillman B. Heterochromatin dynamics in mouse cells: interaction between chromatin assembly factor 1 and HP1 proteins. Mol Cell 1999; 4:529 - 540
  • Dohke K, Miyazaki S, Tanaka K, Urano T, Grewal SI, Murakami Y. Fission yeast chromatin assembly factor 1 assists in the replication-coupled maintenance of heterochromatin. Genes Cells 2008; 13:1027 - 1043
  • Maison C, Almouzni G. HP1 and the dynamics of heterochromatin maintenance. Nat Rev Mol Cell Biol 2004; 5:296 - 304
  • Wallace JA, Orr-Weaver TL. Replication of heterochromatin: insights into mechanisms of epigenetic inheritance. Chromosoma 2005; 114:389 - 402
  • Lejeune E, Bortfeld M, White SA, Pidoux AL, Ekwall K, Allshire RC, et al. The chromatin-remodeling factor FACT contributes to centromeric heterochromatin independently of RNAi. Curr Biol 2007; 17:1219 - 1224
  • Gambus A, Jones RC, Sanchez-Diaz A, Kanemaki M, van Deursen F, Edmondson RD, et al. GINS maintains association of Cdc45 with MCM in replisome progression complexes at eukaryotic DNA replication forks. Nat Cell Biol 2006; 8:358 - 366
  • Nakayama Ji, Allshire RC, Klar AJS, Grewal SIS. A role for DNA polymerase alpha in epigenetic control of transcriptional silencing in fission yeast. EMBO J 2001; 20:2857 - 2866
  • Ahmed S, Saini S, Arora S, Singh J. Chromodomain protein Swi6-mediated role of DNA polymerase alpha in establishment of silencing in fission Yeast. J Biol Chem 2001; 276:47814 - 47821
  • Natsume T, Tsutsui Y, Sutani T, Dunleavy EM, Pidou AL, Iwasaki H, et al. A DNA polymerase alpha accessory protein, Mcl1, is required for propagation of centromere structures in fission yeast. PLoS One 2008; 3:2221
  • Bailis JM, Bernard P, Antonelli R, Allshire RC, Forsburg SL. Hsk1-Dfp1 is required for heterochromatin-mediated cohesion at centromeres. Nat Cell Biol 2003; 5:1111 - 1116
  • Hayashi MT, Takahashi TS, Nakagawa T, Nakayama J, Masukata H. The heterochromatin protein Swi6/HP1 activates replication origins at the pericentromeric region and silent mating-type locus. Nat Cell Biol 2009; 11:357 - 362
  • Leatherwood J, Lopez-Girona A, Russell P. Interaction of Cdc2 and Cdc18 with a fission yeast ORC2-like protein. Nature 1996; 379:360 - 363
  • Lorentz A, Ostermann K, Fleck O, Schmidt H. Switching gene swi6, involved in repression of silent mating-type loci in fission yeast, encodes a homologue of chromatid-associated proteins from Drosophila and mammals. Gene (Amsterdam) 1994; 143:139 - 143
  • Ekwall K, Nimmo ER, Javerzat JP, Borgstrom B, Egel R, Cranston G, et al. Mutations in the fission yeast silencing factors clr4+ and rik1+ disrupt the localisation of the chromo domain protein Swi6p and impair centromere function. Journal of Cell Science 1996; 109:2637 - 2648
  • Liu J, Smith CL, DeRyckere D, DeAngelis K, Martin GS, Berger JM. Structure and function of Cdc6/Cdc18: implications for origin recognition and checkpoint control. Mol Cell 2000; 6:637 - 648
  • Sivakumar S, Porter-Goff M, Patel PK, Benoit K, Rhind N. In vivo labeling of fission yeast DNA with thymidine and thymidine analogs. Methods 2004; 33:213 - 219
  • Hodson JA, Bailis JM, Forsburg SL. Efficient labeling of fission yeast Schizosaccharomyces pombe with thymidine and BUdR. Nucleic Acids Res 2003; 31:134
  • Feng W, Collingwood D, Boeck ME, Fox LA, Alvino GM, Fangman WL, et al. Genomic mapping of single-stranded DNA in hydroxyurea-challenged yeasts identifies origins of replication. Nat Cell Biol 2006; 8:148 - 155
  • Smothers JF, Henikoff S. The HP1 chromo shadow domain binds a consensus peptide pentamer. Curr Biol 2000; 10:27 - 30
  • Shankaranarayana GD, Motamedi MR, Moazed D, Grewal SIS. Sir2 regulates histone H3 lysine 9 methylation and heterochromatin assembly in fission yeast. Curr Biol 2003; 13:1240 - 1246
  • Freeman-Cook LL, Gomez EB, Spedale EJ, Marlett J, Forsburg SL, Pillus L, et al. Conserved locus-specific silencing functions of Schizosaccharomyces pombe sir2+. Genetics 2005; 169:1243 - 1260
  • Li H, Motamedi MR, Yip CK, Wang Z, Walz T, Patel DJ, et al. An alpha motif at tas3 c terminus mediates rits cis spreading and promotes heterochromatic gene silencing. Mol Cell 2009; 34:155 - 167
  • Seeler JS, Marchio A, Sitterlin D, Transy C, Dejean A. Interaction of SP100 with HP1 proteins: a link between the promyelocytic leukemia-associated nuclear bodies and the chromatin compartment. Proc Natl Acad Sci USA 1998; 95:7316 - 7321
  • Prasanth SG, Prasanth KV, Siddiqui K, Spector DL, Stillman B. Human Orc2 localizes to centrosomes, centromeres and heterochromatin during chromosome inheritance. EMBO J 2004; 23:2651 - 2663
  • Tabancay AP Jr, Forsburg SL. Eukaryotic DNA replication in a chromatin context. Curr Top Dev Biol 2006; 76:129 - 184
  • Bell SP, Kobayashi R, Stillman B. Yeast origin recognition complex functions in transcription silencing and DNA replication. Science 1993; 262:1844 - 1849
  • Foss M, McNally FJ, Laurenson P, Rine J. Origin recognition complex (ORC) in transcriptional silencing and DNA replication in S. cerevisiae. Science 1993; 262:1838 - 1844
  • Dillin A, Rine J. Separable functions of ORC5 in replication initiation and silencing in Saccharomyces cerevisiae. Genetics 1997; 147:1053 - 1062
  • Bachant J, Jessen SR, Kavanaugh SE, Fielding CS. The yeast S phase checkpoint enables replicating chromosomes to bi-orient and restrain spindle extension during S phase distress. J Cell Biol 2005; 168:999 - 1012
  • Forsburg SL, Rhind N. Basic methods for fission yeast. Yeast 2006; 23:173 - 183
  • Forsburg SL, Sherman DA. General purpose tagging vectors for fission yeast. Gene 1997; 191:191 - 195
  • Forsburg SL. Comparison of Schizosaccharomyces pombe expression systems. Nucleic Acids Res 1993; 21:2955 - 2956
  • Siam R, Dolan WP, Forsburg SL. Choosing and using Schizosaccharomyces pombe plasmids. Methods 2004; 33:189 - 198
  • Gomez EB, Forsburg SL. Analysis of the fission yeast Schizosaccharomyces pombe cell cycle. Methods Mol Biol 2004; 241:93 - 111