962
Views
16
CrossRef citations to date
0
Altmetric
Research Paper

Whole DNA methylome profiling in mice exposed to secondhand smoke

, , , , &
Pages 1302-1314 | Received 02 Aug 2012, Accepted 04 Oct 2012, Published online: 10 Oct 2012

References

  • International Agency for Research on Cancer (IARC). Tobacco smoke and involuntary smoking. Lyon: World Health Organization (WHO), International Agency for Research on Cancer, 2004: 1191-413.
  • The US Surgeon General. The health consequences of involuntary exposure to tobacco smoke: A report of the Surgeon General. US Department of Health and Human Services, Centers for Disease Control and Prevention, Coordinating Center for Health Promotion, National Center for Chronic Disease Prevention and Health Promotion, Office on Smoking and Health, 2006.
  • World Health Organization (WHO). WHO report on the global tobacco epidemic: the MPOWER package, 2008.
  • Oberg M, Jaakkola MS, Woodward A, Peruga A, Prüss-Ustün A. Worldwide burden of disease from exposure to second-hand smoke: a retrospective analysis of data from 192 countries. Lancet 2011; 377:139 - 46; http://dx.doi.org/10.1016/S0140-6736(10)61388-8; PMID: 21112082
  • Besaratinia A, Pfeifer GP. Second-hand smoke and human lung cancer. Lancet Oncol 2008; 9:657 - 66; http://dx.doi.org/10.1016/S1470-2045(08)70172-4; PMID: 18598930
  • Wipfli HL, Samet JM. Second-hand smoke’s worldwide disease toll. Lancet 2011; 377:101 - 2; http://dx.doi.org/10.1016/S0140-6736(10)61922-8; PMID: 21112081
  • Jemal A, Bray F, Center MM, Ferlay J, Ward E, Forman D. Global cancer statistics. CA Cancer J Clin 2011; 61:69 - 90; http://dx.doi.org/10.3322/caac.20107; PMID: 21296855
  • American Cancer Society (ACS). Cancer facts & figures 2012. American Cancer Society Inc.: National Home Office. Atlanta: American Cancer Society, 2012.
  • Sato M, Shames DS, Gazdar AF, Minna JD. A translational view of the molecular pathogenesis of lung cancer. J Thorac Oncol 2007; 2:327 - 43; http://dx.doi.org/10.1097/01.JTO.0000263718.69320.4c; PMID: 17409807
  • Sun S, Schiller JH, Gazdar AF. Lung cancer in never smokers--a different disease. Nat Rev Cancer 2007; 7:778 - 90; http://dx.doi.org/10.1038/nrc2190; PMID: 17882278
  • Kulis M, Esteller M. DNA methylation and cancer. Adv Genet 2010; 70:27 - 56; http://dx.doi.org/10.1016/B978-0-12-380866-0.60002-2; PMID: 20920744
  • Laird PW. Principles and challenges of genomewide DNA methylation analysis. Nat Rev Genet 2010; 11:191 - 203; http://dx.doi.org/10.1038/nrg2732; PMID: 20125086
  • Baylin SB, Jones PA. A decade of exploring the cancer epigenome - biological and translational implications. Nat Rev Cancer 2011; 11:726 - 34; http://dx.doi.org/10.1038/nrc3130; PMID: 21941284
  • Rodríguez-Paredes M, Esteller M. Cancer epigenetics reaches mainstream oncology. Nat Med 2011; 17:330 - 9; http://dx.doi.org/10.1038/nm.2305; PMID: 21386836
  • Laird PW. The power and the promise of DNA methylation markers. Nat Rev Cancer 2003; 3:253 - 66; http://dx.doi.org/10.1038/nrc1045; PMID: 12671664
  • Feinberg AP, Vogelstein B. Hypomethylation distinguishes genes of some human cancers from their normal counterparts. Nature 1983; 301:89 - 92; http://dx.doi.org/10.1038/301089a0; PMID: 6185846
  • Wilson AS, Power BE, Molloy PL. DNA hypomethylation and human diseases. Biochim Biophys Acta 2007; 1775:138 - 62; PMID: 17045745
  • Esteller M. Epigenetics in cancer. N Engl J Med 2008; 358:1148 - 59; http://dx.doi.org/10.1056/NEJMra072067; PMID: 18337604
  • Suzuki MM, Bird A. DNA methylation landscapes: provocative insights from epigenomics. Nat Rev Genet 2008; 9:465 - 76; http://dx.doi.org/10.1038/nrg2341; PMID: 18463664
  • Jones PA, Baylin SB. The epigenomics of cancer. Cell 2007; 128:683 - 92; http://dx.doi.org/10.1016/j.cell.2007.01.029; PMID: 17320506
  • Takai D, Jones PA. Comprehensive analysis of CpG islands in human chromosomes 21 and 22. Proc Natl Acad Sci U S A 2002; 99:3740 - 5; http://dx.doi.org/10.1073/pnas.052410099; PMID: 11891299
  • Ehrlich M. DNA hypomethylation in cancer cells. Epigenomics 2009; 1:239 - 59; http://dx.doi.org/10.2217/epi.09.33; PMID: 20495664
  • Nagarajan RP, Costello JF. Epigenetic mechanisms in glioblastoma multiforme. Semin Cancer Biol 2009; 19:188 - 97; http://dx.doi.org/10.1016/j.semcancer.2009.02.005; PMID: 19429483
  • Kim SI, Arlt VM, Yoon JI, Cole KJ, Pfeifer GP, Phillips DH, et al. Whole body exposure of mice to secondhand smoke induces dose-dependent and persistent promutagenic DNA adducts in the lung. Mutat Res 2011; 716:92 - 8; http://dx.doi.org/10.1016/j.mrfmmm.2011.08.008; PMID: 21925188
  • Kim SI, Yoon JI, Tommasi S, Besaratinia A. New experimental data linking secondhand smoke exposure to lung cancer in nonsmokers. FASEB J 2012; 26:1845 - 54; http://dx.doi.org/10.1096/fj.11-199984; PMID: 22318968
  • Tommasi S, Karm DL, Wu X, Yen Y, Pfeifer GP. Methylation of homeobox genes is a frequent and early epigenetic event in breast cancer. Breast Cancer Res 2009; 11:R14; http://dx.doi.org/10.1186/bcr2233; PMID: 19250546
  • Tommasi S, Kim SI, Zhong X, Wu X, Pfeifer GP, Besaratinia A. Investigating the epigenetic effects of a prototype smoke-derived carcinogen in human cells. PLoS One 2010; 5:e10594; http://dx.doi.org/10.1371/journal.pone.0010594; PMID: 20485678
  • Xiong Z, Laird PW. COBRA: a sensitive and quantitative DNA methylation assay. Nucleic Acids Res 1997; 25:2532 - 4; http://dx.doi.org/10.1093/nar/25.12.2532; PMID: 9171110
  • Frommer M, McDonald LE, Millar DS, Collis CM, Watt F, Grigg GW, et al. A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc Natl Acad Sci U S A 1992; 89:1827 - 31; http://dx.doi.org/10.1073/pnas.89.5.1827; PMID: 1542678
  • Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, et al, Mouse Genome Sequencing Consortium. Initial sequencing and comparative analysis of the mouse genome. Nature 2002; 420:520 - 62; http://dx.doi.org/10.1038/nature01262; PMID: 12466850
  • Goodier JL, Ostertag EM, Du K, Kazazian HH Jr.. A novel active L1 retrotransposon subfamily in the mouse. Genome Res 2001; 11:1677 - 85; http://dx.doi.org/10.1101/gr.198301; PMID: 11591644
  • Martens JH, O’Sullivan RJ, Braunschweig U, Opravil S, Radolf M, Steinlein P, et al. The profile of repeat-associated histone lysine methylation states in the mouse epigenome. EMBO J 2005; 24:800 - 12; http://dx.doi.org/10.1038/sj.emboj.7600545; PMID: 15678104
  • Yang AS, Estécio MR, Doshi K, Kondo Y, Tajara EH, Issa JP. A simple method for estimating global DNA methylation using bisulfite PCR of repetitive DNA elements. Nucleic Acids Res 2004; 32:e38; http://dx.doi.org/10.1093/nar/gnh032; PMID: 14973332
  • Hecht SS. Tobacco carcinogens, their biomarkers and tobacco-induced cancer. Nat Rev Cancer 2003; 3:733 - 44; http://dx.doi.org/10.1038/nrc1190; PMID: 14570033
  • Martin KR, Jokinen MP, Honeycutt HP, Quinn A, Kari FW, Barrett JC, et al. Tumor profile of novel p53 heterozygous Tg.AC (v-Ha-ras) bitransgenic mice treated with benzo(a)pyrene and fed dietary N-acetyl-L-cysteine (NAC). Toxicological sciences: an official journal of the Society of Toxicology 2004; 81:293-301.
  • Talaska G, Jaeger M, Reilman R, Collins T, Warshawsky D. Chronic, topical exposure to benzo[a]pyrene induces relatively high steady-state levels of DNA adducts in target tissues and alters kinetics of adduct loss. Proc Natl Acad Sci U S A 1996; 93:7789 - 93; http://dx.doi.org/10.1073/pnas.93.15.7789; PMID: 8755554
  • Belinsky SA. Gene-promoter hypermethylation as a biomarker in lung cancer. Nat Rev Cancer 2004; 4:707 - 17; http://dx.doi.org/10.1038/nrc1432; PMID: 15343277
  • Heller G, Zielinski CC, Zöchbauer-Müller S. Lung cancer: from single-gene methylation to methylome profiling. Cancer Metastasis Rev 2010; 29:95 - 107; http://dx.doi.org/10.1007/s10555-010-9203-x; PMID: 20099008
  • Scesnaite A, Jarmalaite S, Mutanen P, Anttila S, Nyberg F, Benhamou S, et al. Similar DNA methylation pattern in lung tumours from smokers and never-smokers with second-hand tobacco smoke exposure. Mutagenesis 2012; 27:423 - 9; http://dx.doi.org/10.1093/mutage/ger092; PMID: 22217548
  • Esteller M. Cancer epigenomics: DNA methylomes and histone-modification maps. Nat Rev Genet 2007; 8:286 - 98; http://dx.doi.org/10.1038/nrg2005; PMID: 17339880
  • Schembri F, Sridhar S, Perdomo C, Gustafson AM, Zhang X, Ergun A, et al. MicroRNAs as modulators of smoking-induced gene expression changes in human airway epithelium. Proc Natl Acad Sci U S A 2009; 106:2319 - 24; http://dx.doi.org/10.1073/pnas.0806383106; PMID: 19168627
  • Hutt JA, Vuillemenot BR, Barr EB, Grimes MJ, Hahn FF, Hobbs CH, et al. Life-span inhalation exposure to mainstream cigarette smoke induces lung cancer in B6C3F1 mice through genetic and epigenetic pathways. Carcinogenesis 2005; 26:1999 - 2009; http://dx.doi.org/10.1093/carcin/bgi150; PMID: 15944214
  • DeMarini DM. Genotoxicity of tobacco smoke and tobacco smoke condensate: a review. Mutat Res 2004; 567:447 - 74; http://dx.doi.org/10.1016/j.mrrev.2004.02.001; PMID: 15572290
  • Jiang CL, Jin SG, Pfeifer GP. MBD3L1 is a transcriptional repressor that interacts with methyl-CpG-binding protein 2 (MBD2) and components of the NuRD complex. J Biol Chem 2004; 279:52456 - 64; http://dx.doi.org/10.1074/jbc.M409149200; PMID: 15456747