Human metastable epiallele candidates link to common disorders

References

• Waterland RA, Kellermayer R, Laritsky E, Rayco-Solon P, Harris RA, Travisano M, et al. Season of conception in rural gambia affects DNA methylation at putative human metastable epialleles. PLoS Genet 2010; 6:e1001252; http://dx.doi.org/10.1371/journal.pgen.1001252; PMID: 21203497
   PubMed Web of Science ®Google Scholar
• Barouki R, Gluckman PD, Grandjean P, Hanson M, Heindel JJ. Developmental origins of non-communicable disease: implications for research and public health. Environ Health 2012; 11:42; http://dx.doi.org/10.1186/1476-069X-11-42; PMID: 22715989
   PubMed Web of Science ®Google Scholar
• Cortessis VK, Thomas DC, Levine AJ, Breton CV, Mack TM, Siegmund KD, et al. Environmental epigenetics: prospects for studying epigenetic mediation of exposure-response relationships. Hum Genet 2012; 131:1565 - 89; http://dx.doi.org/10.1007/s00439-012-1189-8; PMID: 22740325
   PubMed Web of Science ®Google Scholar
• Harris RA, Nagy-Szakal D, Pedersen N, Opekun A, Bronsky J, Munkholm P, et al. Genome-wide peripheral blood leukocyte DNA methylation microarrays identified a single association with inflammatory bowel diseases. Inflamm Bowel Dis 2012; 18:2334 - 41; http://dx.doi.org/10.1002/ibd.22956; PMID: 22467598
   PubMed Web of Science ®Google Scholar
• Pan H, Chen L, Dogra S, Teh AL, Tan JH, Lim YI, et al. Measuring the methylome in clinical samples: improved processing of the Infinium Human Methylation450 BeadChip Array. Epigenetics 2012; 7:1173 - 87; http://dx.doi.org/10.4161/epi.22102; PMID: 22964528
   PubMed Web of Science ®Google Scholar
• Sandoval J, Heyn H, Moran S, Serra-Musach J, Pujana MA, Bibikova M, et al. Validation of a DNA methylation microarray for 450,000 CpG sites in the human genome. Epigenetics 2011; 6:692 - 702; http://dx.doi.org/10.4161/epi.6.6.16196; PMID: 21593595
   PubMed Web of Science ®Google Scholar
• DesRochers TM, Shamis Y, Alt-Holland A, Kudo Y, Takata T, Wang G, et al. The 3D tissue microenvironment modulates DNA methylation and E-cadherin expression in squamous cell carcinoma. Epigenetics 2012; 7:34 - 46; http://dx.doi.org/10.4161/epi.7.1.18546; PMID: 22207358
   PubMed Web of Science ®Google Scholar
• Wang Z, Liu L, Wang M, Shen M, Li J, Liu J, et al. NOTCH1 regulates migration and invasion of skin cancer cells by E-cadherin repression. Mol Cell Biochem 2012; 362:35 - 41; http://dx.doi.org/10.1007/s11010-011-1125-6; PMID: 22038626
   PubMed Web of Science ®Google Scholar
• Katsamba P, Carroll K, Ahlsen G, Bahna F, Vendome J, Posy S, et al. Linking molecular affinity and cellular specificity in cadherin-mediated adhesion. Proc Natl Acad Sci U S A 2009; 106:11594 - 9; http://dx.doi.org/10.1073/pnas.0905349106; PMID: 19553217
   PubMed Web of Science ®Google Scholar
• Khulan B, Cooper WN, Skinner BM, Bauer J, Owens S, Prentice AM, et al. Periconceptional maternal micronutrient supplementation is associated with widespread gender related changes in the epigenome: a study of a unique resource in the Gambia. Hum Mol Genet 2012; 21:2086 - 101; http://dx.doi.org/10.1093/hmg/dds026; PMID: 22307237
   PubMed Web of Science ®Google Scholar
• Etcheverry A, Aubry M, de Tayrac M, Vauleon E, Boniface R, Guenot F, et al. DNA methylation in glioblastoma: impact on gene expression and clinical outcome. BMC Genomics 2010; 11:701; http://dx.doi.org/10.1186/1471-2164-11-701; PMID: 21156036
   PubMed Web of Science ®Google Scholar
• Veerla S, Panagopoulos I, Jin Y, Lindgren D, Höglund M. Promoter analysis of epigenetically controlled genes in bladder cancer. Genes Chromosomes Cancer 2008; 47:368 - 78; http://dx.doi.org/10.1002/gcc.20542; PMID: 18196590
   PubMed Web of Science ®Google Scholar
• Li L, Lee KM, Han W, Choi JY, Lee JY, Kang GH, et al. Estrogen and progesterone receptor status affect genome-wide DNA methylation profile in breast cancer. Hum Mol Genet 2010; 19:4273 - 7; http://dx.doi.org/10.1093/hmg/ddq351; PMID: 20724461
   PubMed Web of Science ®Google Scholar
• Naghibalhossaini F, Hosseini HM, Mokarram P, Zamani M. High frequency of genes’ promoter methylation, but lack of BRAF V600E mutation among Iranian colorectal cancer patients. Pathol Oncol Res 2011; 17:819 - 25; http://dx.doi.org/10.1007/s12253-011-9388-5; PMID: 21455633
   PubMed Web of Science ®Google Scholar
• Kim J, Min SY, Lee HE, Kim WH. Aberrant DNA methylation and tumor suppressive activity of the EBF3 gene in gastric carcinoma. Int J Cancer 2012; 130:817 - 26; http://dx.doi.org/10.1002/ijc.26038; PMID: 21387304
   PubMed Web of Science ®Google Scholar
• Shu J, Jelinek J, Chang H, Shen L, Qin T, Chung W, et al. Silencing of bidirectional promoters by DNA methylation in tumorigenesis. Cancer Res 2006; 66:5077 - 84; http://dx.doi.org/10.1158/0008-5472.CAN-05-2629; PMID: 16707430
   PubMed Web of Science ®Google Scholar
• Nimmo ER, Prendergast JG, Aldhous MC, Kennedy NA, Henderson P, Drummond HE, et al. Genome-wide methylation profiling in Crohn’s disease identifies altered epigenetic regulation of key host defense mechanisms including the Th17 pathway. Inflamm Bowel Dis 2012; 18:889 - 99; http://dx.doi.org/10.1002/ibd.21912; PMID: 22021194
   PubMed Web of Science ®Google Scholar
• Kaut O, Schmitt I, Wüllner U. Genome-scale methylation analysis of Parkinson’s disease patients’ brains reveals DNA hypomethylation and increased mRNA expression of cytochrome P450 2E1. Neurogenetics 2012; 13:87 - 91; http://dx.doi.org/10.1007/s10048-011-0308-3; PMID: 22238121
   PubMed Web of Science ®Google Scholar
• Kaminsky Z, Tochigi M, Jia P, Pal M, Mill J, Kwan A, et al. A multi-tissue analysis identifies HLA complex group 9 gene methylation differences in bipolar disorder. Mol Psychiatry 2012; 17:728 - 40; http://dx.doi.org/10.1038/mp.2011.64; PMID: 21647149
   PubMed Web of Science ®Google Scholar
• Ligtenberg MJ, Kuiper RP, Chan TL, Goossens M, Hebeda KM, Voorendt M, et al. Heritable somatic methylation and inactivation of MSH2 in families with Lynch syndrome due to deletion of the 3′ exons of TACSTD1. Nat Genet 2009; 41:112 - 7; http://dx.doi.org/10.1038/ng.283; PMID: 19098912
   PubMed Web of Science ®Google Scholar
• Kerkel K, Spadola A, Yuan E, Kosek J, Jiang L, Hod E, et al. Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation. Nat Genet 2008; 40:904 - 8; http://dx.doi.org/10.1038/ng.174; PMID: 18568024
   PubMed Web of Science ®Google Scholar
• Rakyan VK, Blewitt ME, Druker R, Preis JI, Whitelaw E. Metastable epialleles in mammals. Trends Genet 2002; 18:348 - 51; http://dx.doi.org/10.1016/S0168-9525(02)02709-9; PMID: 12127774
   PubMed Web of Science ®Google Scholar
• Weksberg R, Shuman C, Caluseriu O, Smith AC, Fei YL, Nishikawa J, et al. Discordant KCNQ1OT1 imprinting in sets of monozygotic twins discordant for Beckwith-Wiedemann syndrome. Hum Mol Genet 2002; 11:1317 - 25; http://dx.doi.org/10.1093/hmg/11.11.1317; PMID: 12019213
   PubMed Web of Science ®Google Scholar
• Cooney CA, Dave AA, Wolff GL. Maternal methyl supplements in mice affect epigenetic variation and DNA methylation of offspring. J Nutr 2002; 132:Suppl 2393S - 400S; PMID: 12163699
   PubMed Web of Science ®Google Scholar
• Waterland RA, Jirtle RL. Transposable elements: targets for early nutritional effects on epigenetic gene regulation. Mol Cell Biol 2003; 23:5293 - 300; http://dx.doi.org/10.1128/MCB.23.15.5293-5300.2003; PMID: 12861015
   PubMed Web of Science ®Google Scholar
• Dolinoy DC, Huang D, Jirtle RL. Maternal nutrient supplementation counteracts bisphenol A-induced DNA hypomethylation in early development. Proc Natl Acad Sci U S A 2007; 104:13056 - 61; http://dx.doi.org/10.1073/pnas.0703739104; PMID: 17670942
   PubMed Web of Science ®Google Scholar
• Waterland RA, Dolinoy DC, Lin JR, Smith CA, Shi X, Tahiliani KG. Maternal methyl supplements increase offspring DNA methylation at Axin Fused. Genesis 2006; 44:401 - 6; http://dx.doi.org/10.1002/dvg.20230; PMID: 16868943
   PubMed Web of Science ®Google Scholar
• Skiriute D, Vaitkiene P, Saferis V, Asmoniene V, Skauminas K, Deltuva VP, et al. MGMT, GATA6, CD81, DR4, and CASP8 gene promoter methylation in glioblastoma. BMC Cancer 2012; 12:218; http://dx.doi.org/10.1186/1471-2407-12-218; PMID: 22672670
   PubMed Web of Science ®Google Scholar
• Wirdefeldt K, Gatz M, Reynolds CA, Prescott CA, Pedersen NL. Heritability of Parkinson disease in Swedish twins: a longitudinal study. Neurobiol Aging 2011; 32:1923 - , e1-8; http://dx.doi.org/10.1016/j.neurobiolaging.2011.02.017; PMID: 21482443
   PubMed Web of Science ®Google Scholar
• Winkler AS, Tütüncü E, Trendafilova A, Meindl M, Kaaya J, Schmutzhard E, et al. Parkinsonism in a population of northern Tanzania: a community-based door-to-door study in combination with a prospective hospital-based evaluation. J Neurol 2010; 257:799 - 805; http://dx.doi.org/10.1007/s00415-009-5420-z; PMID: 20024574
   PubMed Web of Science ®Google Scholar
• Petronis A. Epigenetics and bipolar disorder: new opportunities and challenges. Am J Med Genet C Semin Med Genet 2003; 123C:65 - 75; http://dx.doi.org/10.1002/ajmg.c.20015; PMID: 14601038
   PubMed Web of Science ®Google Scholar
• Ohgaki H. Epidemiology of brain tumors. Methods Mol Biol 2009; 472:323 - 42; http://dx.doi.org/10.1007/978-1-60327-492-0_14; PMID: 19107440
   PubMedGoogle Scholar