Archaebiotics

References

• Zhang AQ, Mitchell SC, Smith RL. Dietary precursors of trimethylamine in man: a pilot study. Food Chem Toxicol 1999; 37:515 - 20; http://dx.doi.org/10.1016/S0278-6915(99)00028-9; PMID: 10456680
   PubMed Web of Science ®Google Scholar
• Koeth RA, Wang Z, Levison BS, Buffa JA, Org E, Sheehy BT, Britt EB, Fu X, Wu Y, Li L, et al. Intestinal microbiota metabolism of L-carnitine, a nutrient in red meat, promotes atherosclerosis. Nat Med 2013; 19:576 - 85; http://dx.doi.org/10.1038/nm.3145; PMID: 23563705
   PubMed Web of Science ®Google Scholar
• Craciun S, Balskus EP. Microbial conversion of choline to trimethylamine requires a glycyl radical enzyme. Proc Natl Acad Sci U S A 2012; 109:21307 - 12; http://dx.doi.org/10.1073/pnas.1215689109; PMID: 23151509
   PubMed Web of Science ®Google Scholar
• Institute of Medicine (U.S.). Standing Committee on the Scientific Evaluation of Dietary Reference Intakes., Institute of Medicine (U.S.). Panel on Folate Other B Vitamins and Choline., Institute of Medicine (U.S.). Subcommittee on Upper Reference Levels of Nutrients. Dietary reference intakes for thiamin, riboflavin, niacin, vitamin B6, folate, vitamin B12, pantothenic acid, biotin, and choline. Washington, D.C.: National Academy Press, 1998.
   Google Scholar
• Buchman AL, Dubin MD, Moukarzel AA, Jenden DJ, Roch M, Rice KM, Gornbein J, Ament ME. Choline deficiency: a cause of hepatic steatosis during parenteral nutrition that can be reversed with intravenous choline supplementation. Hepatology 1995; 22:1399 - 403; PMID: 7590654
   PubMed Web of Science ®Google Scholar
• Spencer MD, Hamp TJ, Reid RW, Fischer LM, Zeisel SH, Fodor AA. Association between composition of the human gastrointestinal microbiome and development of fatty liver with choline deficiency. Gastroenterology 2011; 140:976 - 86; http://dx.doi.org/10.1053/j.gastro.2010.11.049; PMID: 21129376
   PubMed Web of Science ®Google Scholar
• Wang Z, Klipfell E, Bennett BJ, Koeth R, Levison BS, Dugar B, Feldstein AE, Britt EB, Fu X, Chung YM, et al. Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease. Nature 2011; 472:57 - 63; http://dx.doi.org/10.1038/nature09922; PMID: 21475195
   PubMed Web of Science ®Google Scholar
• Ayesh R, Mitchell SC, Zhang A, Smith RL. The fish odour syndrome: biochemical, familial, and clinical aspects. BMJ 1993; 307:655 - 7; http://dx.doi.org/10.1136/bmj.307.6905.655; PMID: 8401051
   PubMed Web of Science ®Google Scholar
• D’Angelo R, Esposito T, Calabrò M, Rinaldi C, Robledo R, Varriale B, Sidoti A. FMO3 allelic variants in Sicilian and Sardinian populations: trimethylaminuria and absence of fish-like body odor. Gene 2013; 515:410 - 5; http://dx.doi.org/10.1016/j.gene.2012.12.047; PMID: 23266626
   PubMed Web of Science ®Google Scholar
• Mackay RJ, McEntyre CJ, Henderson C, Lever M, George PM. Trimethylaminuria: causes and diagnosis of a socially distressing condition. Clin Biochem Rev 2011; 32:33 - 43; PMID: 21451776
   PubMedGoogle Scholar
• Tang WH, Wang Z, Levison BS, Koeth RA, Britt EB, Fu X, Wu Y, Hazen SL. Intestinal microbial metabolism of phosphatidylcholine and cardiovascular risk. N Engl J Med 2013; 368:1575 - 84; http://dx.doi.org/10.1056/NEJMoa1109400; PMID: 23614584
   PubMed Web of Science ®Google Scholar
• Wolrath H, Ståhlbom B, Hallén A, Forsum U. Trimethylamine and trimethylamine oxide levels in normal women and women with bacterial vaginosis reflect a local metabolism in vaginal secretion as compared to urine. APMIS 2005; 113:513 - 6; http://dx.doi.org/10.1111/j.1600-0463.2005.apm_175.x; PMID: 16086821
   PubMed Web of Science ®Google Scholar
• Neill AR, Grime DW, Dawson RM. Conversion of choline methyl groups through trimethylamine into methane in the rumen. Biochem J 1978; 170:529 - 35; PMID: 646798
   PubMed Web of Science ®Google Scholar
• Hippe H, Caspari D, Fiebig K, Gottschalk G. Utilization of trimethylamine and other N-methyl compounds for growth and methane formation by Methanosarcina barkeri. Proc Natl Acad Sci U S A 1979; 76:494 - 8; http://dx.doi.org/10.1073/pnas.76.1.494; PMID: 284366
   PubMed Web of Science ®Google Scholar
• Conway de Macario E, Macario AJ. Methanogenic archaea in health and disease: a novel paradigm of microbial pathogenesis. Int J Med Microbiol 2009; 299:99 - 108; http://dx.doi.org/10.1016/j.ijmm.2008.06.011; PMID: 18757236
   PubMed Web of Science ®Google Scholar
• Mihajlovski A, Alric M, Brugère JF. A putative new order of methanogenic Archaea inhabiting the human gut, as revealed by molecular analyses of the mcrA gene. Res Microbiol 2008; 159:516 - 21; http://dx.doi.org/10.1016/j.resmic.2008.06.007; PMID: 18644435
   PubMed Web of Science ®Google Scholar
• Mihajlovski A, Doré J, Levenez F, Alric M, Brugère J-F. Molecular evaluation of the human gut methanogenic archaeal microbiota reveals an age-associated increase of the diversity. Environ Microbiol Rep 2010; 2:272 - 80; http://dx.doi.org/10.1111/j.1758-2229.2009.00116.x; PMID: 23766078
   PubMed Web of Science ®Google Scholar
• Dridi B, Fardeau ML, Ollivier B, Raoult D, Drancourt M. Methanomassiliicoccus luminyensis gen. nov., sp. nov., a methanogenic archaeon isolated from human faeces. Int J Syst Evol Microbiol 2012; 62:1902 - 7; http://dx.doi.org/10.1099/ijs.0.033712-0; PMID: 22859731
   PubMed Web of Science ®Google Scholar
• Gorlas A, Robert C, Gimenez G, Drancourt M, Raoult D. Complete genome sequence of Methanomassiliicoccus luminyensis, the largest genome of a human-associated Archaea species. J Bacteriol 2012; 194:4745; http://dx.doi.org/10.1128/JB.00956-12; PMID: 22887657
   PubMed Web of Science ®Google Scholar
• Borrel G, Harris HM, Tottey W, Mihajlovski A, Parisot N, Peyretaillade E, Peyret P, Gribaldo S, O’Toole PW, Brugère JF. Genome sequence of “Candidatus Methanomethylophilus alvus” Mx1201, a methanogenic archaeon from the human gut belonging to a seventh order of methanogens. J Bacteriol 2012; 194:6944 - 5; http://dx.doi.org/10.1128/JB.01867-12; PMID: 23209209
   PubMed Web of Science ®Google Scholar
• Borrel G, Harris HM, Parisot N, Gaci N, Tottey W, Mihajlovski A, et al. Genome Sequence of “Candidatus Methanomassiliicoccus intestinalis” Issoire-Mx1, a Third Thermoplasmatales-Related Methanogenic Archaeon from Human Feces. Genome Announc 2013; 1.
   Google Scholar
• Krzycki JA. The direct genetic encoding of pyrrolysine. Curr Opin Microbiol 2005; 8:706 - 12; http://dx.doi.org/10.1016/j.mib.2005.10.009; PMID: 16256420
   PubMed Web of Science ®Google Scholar
• Poulsen M, Schwab C, Jensen BB, Engberg RM, Spang A, Canibe N, Højberg O, Milinovich G, Fragner L, Schleper C, et al. Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen. Nat Commun 2013; 4:1428; http://dx.doi.org/10.1038/ncomms2432; PMID: 23385573
   PubMed Web of Science ®Google Scholar
• Borrel G, O’Toole PW, Harris HM, Peyret P, Brugère JF, Gribaldo S. Phylogenomic data support a seventh order of methylotrophic methanogens and provide insights into the evolution of methanogenesis. Genome Biol Evol 2013; 5:1769 - 80; http://dx.doi.org/10.1093/gbe/evt128; PMID: 23985970
   PubMed Web of Science ®Google Scholar
• Dridi B, Fardeau ML, Ollivier B, Raoult D, Drancourt M. The antimicrobial resistance pattern of cultured human methanogens reflects the unique phylogenetic position of archaea. J Antimicrob Chemother 2011; 66:2038 - 44; http://dx.doi.org/10.1093/jac/dkr251; PMID: 21680581
   PubMed Web of Science ®Google Scholar
• Samuel BS, Gordon JI. A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism. Proc Natl Acad Sci U S A 2006; 103:10011 - 6; http://dx.doi.org/10.1073/pnas.0602187103; PMID: 16782812
   PubMed Web of Science ®Google Scholar
• O’Keefe SJ, Chung D, Mahmoud N, Sepulveda AR, Manafe M, Arch J, Adada H, van der Merwe T. Why do African Americans get more colon cancer than Native Africans?. J Nutr 2007; 137:Suppl 175S - 82S; PMID: 17182822
   PubMed Web of Science ®Google Scholar
• Nava GM, Carbonero F, Ou J, Benefiel AC, O’Keefe SJ, Gaskins HR. Hydrogenotrophic microbiota distinguish native Africans from African and European Americans. Environ Microbiol Rep 2012; 4:307 - 15; http://dx.doi.org/10.1111/j.1758-2229.2012.00334.x; PMID: 23760794
   PubMed Web of Science ®Google Scholar
• Claesson MJ, Jeffery IB, Conde S, Power SE, O’Connor EM, Cusack S, Harris HM, Coakley M, Lakshminarayanan B, O’Sullivan O, et al. Gut microbiota composition correlates with diet and health in the elderly. Nature 2012; 488:178 - 84; http://dx.doi.org/10.1038/nature11319; PMID: 22797518
   PubMed Web of Science ®Google Scholar
• Krätzer C, Carini P, Hovey R, Deppenmeier U. Transcriptional profiling of methyltransferase genes during growth of Methanosarcina mazei on trimethylamine. J Bacteriol 2009; 191:5108 - 15; http://dx.doi.org/10.1128/JB.00420-09; PMID: 19525341
   PubMed Web of Science ®Google Scholar