553
Views
18
CrossRef citations to date
0
Altmetric
Extra View

The tangled past of eukaryotic enzymes involved in anaerobic metabolism

, &
Pages 71-74 | Received 23 Mar 2011, Accepted 23 Mar 2011, Published online: 01 May 2011

References

  • Keeling PJ, Palmer JD. Horizontal gene transfer in eukaryotic evolution. Nat Rev Genet 2008; 9:605 - 618; PMID: 18591983; http://dx.doi.org/10.1038/nrg2386
  • Andersson JO. Lateral gene transfer in eukaryotes. Cell Mol Life Sci 62; 1182 - 1197; PMID: 15761667; http://dx.doi.org/10.1007/s00018-005-4539-z
  • Richards TA, Dacks JB, Jenkinson JM, Thornton CR, Talbot NJ. Evolution of filamentous plant pathogens: gene exchange across eukaryotic kingdoms. Curr Biol 2006; 16:1857 - 1864; PMID: 16979565; http://dx.doi.org/10.1016/j.cub.2006.07.052
  • Whitaker JW, McConkey GA, Westhead DR. The transferome of metabolic genes explored: analysis of the horizontal transfer of enzyme encoding genes in unicellular eukaryotes. Genome Biol 2009; 10:36; PMID: 19368726; http://dx.doi.org/10.1186/gb-2009-10-4-r36
  • Martin W, Schnarrenberger C. The evolution of the Calvin cycle from prokaryotic to eukaryotic chromosomes: a case study of functional redundancy in ancient pathways through endosymbiosis. Curr Genet 1997; 32:1 - 18; PMID: 9309164; http://dx.doi.org/10.1007/s002940050241
  • Doolittle WF. You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes. Trends Genet 1998; 14:307 - 311; PMID: 9724962; http://dx.doi.org/10.1016/S0168-9525(98)01494-2
  • Yap WH, Zhang Z, Wang Y. Distinct types of rRNA operons exist in the genome of the actinomycete Thermomonospora chromogena and evidence for horizontal transfer of an entire rRNA operon. J Bacteriol 1999; 181:5201 - 5209; PMID: 10464188
  • Miller SR, Augustine S, Olson TL, Blankenship RE, Selker J, Wood AM. Discovery of a free-living chlorophyll d-producing cyanobacterium with a hybrid proteobacterial/cyanobacterial small-subunit rRNA gene. Proc Natl Acad Sci USA 2005; 102:850 - 855; PMID: 15637160; http://dx.doi.org/10.1073/pnas.0405667102
  • Cohen O, Gophna U, Pupko T. The complexity hypothesis revisited: connectivity rather than function constitutes a barrier to horizontal gene transfer. Mol Biol Evol 2011; 28:1481 - 1489; PMID: 21149642; http://dx.doi.org/10.1093/molbev/msq333
  • Rivera MC, Jain R, Moore JE, Lake JA. Genomic evidence for two functionally distinct gene classes. Proc Natl Acad Sci USA 1998; 95:6239 - 6244; PMID: 9600949
  • Andersson JO. LA Katz, D Bhattacharya. Genome evolution of anaerobic protists: metabolic adaptation via gene acquisition. Genomics and Evolution of Microbial Eukaryotes 2006; Oxford Oxford Univ Press 109 - 122
  • Slot JC, Rokas A. Horizontal transfer of a large and highly toxic secondary metabolic gene cluster between Fungi. Curr Biol 2011; 21:134 - 139; PMID: 21194949; http://dx.doi.org/10.1016/j.cub.2010.12.020
  • Zhaxybayeva O. Gogarten MB, Gogarten JP, Olendzenki L. Detection and quantitative assessment of horizontal gene transfer. Horisontal gene transfer 2009; New York Humana Press 195 - 213; http://dx.doi.org/10.1007/978-1-60327-853-9
  • Stairs CW, Roger AJ, Hampl V. Eukaryotic pyruvate formate lyase and its activating enzyme were acquired laterally from a firmicute. Mol Biol Evol 2011; PMID: 21293046; http://dx.doi.org/10.1093/molbev/msr032
  • Atteia A, et al. Pyruvate formate-lyase and a novel route of eukaryotic ATP synthesis in Chlamydomonas mitochondria. J Biol Chem 2006; 281:9909 - 9918; PMID: 16452484; http://dx.doi.org/10.1074/jbc.M507862200
  • Susko E. First-order correct bootstrap support adjustments for splits that allow hypothesis testing when using maximum likelihood estimation. Mol Biol Evol 2010; 27:1621 - 1629; PMID: 20154180; http://dx.doi.org/10.1093/molbev/msq048
  • Martin W, Müller M. The hydrogen hypothesis for the first eukaryote. Nature 1998; 392:37 - 41; PMID: 9510246; http://dx.doi.org/10.1038/32096
  • Moreira D, Lopez-Garcia P. Symbiosis between methanogenic archaea and delta-proteobacteria as the origin of eukaryotes: the syntrophic hypothesis. J Mol Evol 1998; 47:517 - 530; PMID: 9797402; http://dx.doi.org/10.1007/PL00006408
  • Karlberg O, Canbäck B, Kurland CG, Andersson SGE. The Dual Origin of the Yeast Mitochondrial Proteome. Yeast 2000; 17:170 - 187; PMID: 11025528; http://dx.doi.org/10.1002/1097-0061(20000930)17:3<170::AID-YEA25>3.0.CO;2-V
  • Kurland CG, Andersson SGE. Origin and Evolution of the Mitochondrial Proteome. Microbiol Mol Biol Rev 2000; 64:4786 - 4820; PMID: 11104819
  • Gabaldón T, Huynen MA. Reconstruction of the Proto-Mitochondrial Metabolism. Science 2003; 301:609; PMID: 12893934; http://dx.doi.org/10.1126/science.1085463
  • Touz MC, et al. Arginine deiminase has multiple regulatory rols in the biology of Giardia lamblia. J Cell Sci 2008; 121:2930 - 2938; PMID: 18697833; http://dx.doi.org/10.1242/jcs.026963
  • Morada M, et al. Hydrogenosome-localization of arginine deiminase in Trichomonas vaginalis. Mol Biochem Parasitol 2011; 176:51 - 54; PMID: 21074581; http://dx.doi.org/10.1016/j.molbiopara.2010.10.004
  • Hug LA, Stechmann A, Roger AJ. Phylogenetic distributions and histories of proteins involved in anaerobic pyruvate metabolism in eukaryotes. Mol Biol Evol 2010; 27:311 - 324; PMID: 19805439; http://dx.doi.org/10.1093/molbev/msp237
  • Barton RM, Worman HJ. Prenylated prelamin A interacts with Narf, a novel nuclear protein. J Biol Chem 1999; 274:30008 - 30018; PMID: 10514485; http://dx.doi.org/10.1074/jbc.274.42.30008
  • Liapounova NA, Hampl V, Gordon PM, Sensen CW, Gedamu L, Dacks JB. Reconstructing the mosaic glycolytic pathway of the anaerobic eukaryote Monocercomonoides. Eukaryot Cell 2006; 5:2138 - 2146; PMID: 17071828; http://dx.doi.org/10.1128/EC.00258-06
  • Stechmann A, Baumgartner M, Silberman JD, Roger AJ. The glycolytic pathway of Trimastix pyriformis is an evolutionary mosaic. BMC Evol Biol 2006; 23:6 - 101; PMID: 17123440; http://dx.doi.org/10.1186/1471-2148-6-101
  • Stamatakis A. RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006; 22:2688 - 2690; PMID: 16928733; http://dx.doi.org/10.1093/bioinformatics/btl446
  • Le SQ, Gascuel O. An improved general amino acid replacement matrix. Mol Biol Evol 2008; 25:1307 - 1320; PMID: 18367465; http://dx.doi.org/10.1093/molbev/msn067