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Review

Tropical Africa as a cradle for horizontal transfers of transposable elements between species of the genera Drosophila and Zaprionus

Pages 179-186 | Received 08 Aug 2011, Accepted 12 Sep 2011, Published online: 01 Sep 2011

References

  • Orgel LE, Crick FHC, Sapienza C. Selfish DNA. Nature 1980; 288:645 - 646; PMID: 7453798; http://dx.doi.org/10.1038/288645a0
  • Ohno S, Yomo T. The grammatical rule for all DNA: junk and coding sequences. Electrophoresis 1991; 12:103 - 108; PMID: 2040257; http://dx.doi.org/10.1002/elps.1150120203
  • Brosius J. Retroposons-Seeds of Evolution. Science 1991; 251:753; PMID: 1990437; http://dx.doi.org/10.1126/science.1990437
  • Nowak R. Mining treasures from junk DNA. Science 1994; 263:608 - 610; PMID: 7508142; http://dx.doi.org/10.1126/science.7508142
  • Jordan IK, McDonald J. Interelement Selection in the regulatory region of the copia Retrotransposon. J Mol Evol 1998; 47:670 - 676; PMID: 9847408; http://dx.doi.org/10.1007/PL00006425
  • Petrov DA, Hartl DL. High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups. Mol Biol Evol 1998; 15:293 - 302; PMID: 9501496
  • Biémont C. A Brief History of the Status of Transposable Elements: From Junk DNA to Major Players in Evolution. Genetics 2010; 186:1085 - 1093; PMID: 21156958; http://dx.doi.org/10.1534/genetics.110.124180
  • Pinsker W, Haring E, Hagemann S, Miller WJ. The evolutionary life history of P transposons: from horizontal invaders to domesticated neogenes. Chromosoma 2001; 110:148 - 158; PMID: 11513290; http://dx.doi.org/10.1007/s004120100144
  • Brookfield JFY. The ecology of the genome -Mobile DNA elements and their hosts. Nat Rev Genet 2005; 6:128 - 136; PMID: 15640810; http://dx.doi.org/10.1038/nrg1524
  • Le Rouzic A, Capy P. The first steps of transposable elements invasion: Parasitic strategy vs. genetic drift. Genetics 2005; 169:1033 - 1043; PMID: 15731520; http://dx.doi.org/10.1534/genetics.104.031211
  • Le Rouzic A, Boutin TS, Capy P. Long-term evolution of transposable elements. Proc Natl Acad Sci USA 2007; 104:19375 - 19380; PMID: 18040048; http://dx.doi.org/10.1073/pnas.0705238104
  • de Almeida LM, Carareto CMA. Multiple events of horizontal transfer of the Minos transposable element between Drosophila species. Mol Phylogenet Evol 2005; 35:583 - 594; PMID: 15878127; http://dx.doi.org/10.1016/j.ympev.2004.11.026
  • De Almeida LM, Carareto CMA. Sequence heterogeneity and phylogenetic relationships between the copia retrotransposon in Drosophila species of the repleta and melanogaster groups. Genet Sel Evol 2006; 38:535 - 550; PMID: 16954045; http://dx.doi.org/10.1186/1297-9686-38-5-535
  • de Setta N, Loreto ELS, Carareto CMA. Is the evolutionary history of the O-type P element in the saltans and willistoni groups of Drosophila similar to that of the canonical P element?. J Mol Evol 2007; 65:715 - 724; PMID: 18034216; http://dx.doi.org/10.1007/s00239-007-9051-7
  • de Setta N, Van Sluys MA, Capy P, Carareto CMA. Multiple invasions of Gypsy and Micropia retroelements in genus Zaprionus and melanogaster subgroup of the genus Drosophila.. BMC Evol Biol 2009; 9:279; PMID: 19954522; http://dx.doi.org/10.1186/14712148-9-279
  • de Setta N, Van Sluys MA, Capy P, Carareto CMA. Copia Retrotransposon in the Zaprionus Genus: Another Case of Transposable Element Sharing with the Drosophila melanogaster Subgroup. J Mol Evol 2011; 72:326 - 338; PMID: 21347850; http://dx.doi.org/10.1007/s00239-011-9435-6
  • Throckmorton LH. King RCE. The phylogeny, ecology, and geography of Drosophila 1975; New York Plenum Press 421 - 469
  • Markow TA, O'Grady PM. Evolutionary genetics of reproductive behavior in Drosophila: Connecting the dots. Annu Rev Genet 2005; 39:263 - 291; PMID: 16285861; http://dx.doi.org/10.1146/annurev.genet.39.073003.112454
  • Grimaldi DA. A phylogenetic, revised classification of genera in the Drosophilidae (Diptera). Bull Am Mus Nat Hist 1990; 197:1 - 139
  • DeSalle R. The Phylogenetic Relationships of Flies in the Family Drosophilidae Deduced from mtDNA Sequences. Mol Phylogenet Evol 1992; 1:31 - 40; PMID: 1342922; http://dx.doi.org/10.1016/10557903(92)90033-D
  • Thomas RH. Phylogenetic relationships in Drosophila a conflict between molecular and morphological data. Mol Biol Evol 1993; 10:362 - 374; PMID: 8487635
  • Tatarenkov A, Kwiatowski J, Skarecky D, Barrio E, Ayala FJ. On the evolution of Dopa decarboxylase (Ddc) and Drosophila systematics. J Mol Evol 1999; 48:445 - 462; PMID: 10079283; http://dx.doi.org/10.1007/PL00006489
  • Kwiatowski J, Ayala FJ. Phylogeny of Drosophila and related genera: Conflict between molecular and anatomical analyses. Mol Phylogenet Evol 1999; 13:319 - 328; PMID: 10603260; http://dx.doi.org/10.1006/mpev.1999.0657
  • Remsen J, O'Grady PM. Phylogeny of Drosophilinae (Diptera: Drosophilidae), with comments on combined analysis and character support. Mol Phylogenet Evol 2002; 24:249 - 264; PMID: 12144760; http://dx.doi.org/10.1016/S1055-7903(02)00226-9
  • Da Lage JL, Kergoat GJ, Maczkowiak F, Silvain JF, Cariou ML, Lachaise D. A phylogeny of Drosophilidae using the Amyrel gene: questioning the Drosophila melanogaster species group boundaries. J Zoological Syst Evol Res 2007; 45:47 - 63; http://dx.doi.org/10.1111/j.1439-0469.2006.00389.x
  • Russo CAM, Takezaki N, Nei M. Molecular phylogeny and divergence times of Drosophilid species. Mol Biol Evol 1995; 12:391 - 404; PMID: 7739381
  • Tamura K, Subramanian S, Kumar S. Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks. Mol Biol Evol 2004; 21:36 - 44; PMID: 12949132; http://dx.doi.org/10.1093/molbev/msg236
  • Lachaise D, Cariou ML, David JR, Lemeunier F, Tsacas L, Ashburner M. Historical biogeography of the Drosophila melanogaster species subgroup. Evol Biol 1988; 22:159 - 225
  • Lachaise D, Silvain J-F. How two Afrotropical endemics made two cosmopolitan human commensals: the Drosophila melanogaster-D.simulans palaeogeographic riddle. Genetica 2004; 120:17 - 39; PMID: 15088644; http://dx.doi.org/10.1023/B:GENE.0000017627.27537.ef
  • Hey J, Kliman RM. Population genetics and phylogenetics of DNA sequence variation at multiple loci within the Drosophila melanogaster species complex. Mol Biol Evol 1993; 10:804 - 822; PMID: 8355601
  • Tsacas L, Lachaise D, David JR. Composition and biogeography of the Afrotropical drosophilid fauna 1981; New York Academic Press 197 - 259
  • Yassin A, Araripe LO, Capy P, Da Lage JL, Klaczko LB, Maisonhaute C, et al. Grafting the molecular phylogenetic tree with morphological branches to reconstruct the evolutionary history of the genus Zaprionus (Diptera: Drosophilidae). Mol Phylogenet Evol 2008; 47:903 - 915; PMID: 18462955; http://dx.doi.org/10.1016/j.ympev.2008.01.036
  • Okada T, Carson HL. The genera Phorticella Duda and Zaprionus Coquillett (Diptera, Drosophilidae) of the Oriental region and New Guinea. Kontyu 1983; 539 - 553
  • Chassagnard MT, Kraaijeveld AR. The occurrence of Zaprionus sensu stricto in the palearctic region (Diptera, Drosophilidae). Ann Soc Entomol Fr 1991; 27:495 - 496
  • Vilela CR. Is Zaprionus indianus Gupta, 1970 (Diptera, Drosophilidae) currently colonizing the Neotropical region?. Drosoph Inf Serv 1999; 37 - 39
  • R'Kha S, Capy P, David JR. Host plant specialization in the Drosophila melanogaster species complex - a physiological, behavioral, and genetic analysis. Proc Natl Acad Sci USA 1991; 88:1835 - 1839; PMID: 1900368; http://dx.doi.org/10.1073/pnas.88.5.1835
  • Roque F, Hay JD, Tidon R. Breeding sites of drosophilids (Diptera) in the Brazilian Savanna. I. Fallen fruits of Emmotum nitens (Icacinaceae), Hancornia speciosa (Apocynaceae) and Anacardium humile (Anacardiaceae). Rev Bras Entomol 2009; 53:308 - 313; http://dx.doi.org/10.1590/S0085-56262009000200016
  • Bakula M. Persistence of a microbial flora during postembryogenesis of Drosophila melanogaster. J Invertebr Pathol 1969; 14:365; PMID: 4904970; http://dx.doi.org/10.1016/0022-2011(69)90163-3
  • Gilbert DG. Dispersal of yeasts and bacteria by Drosophila in a temperate forest. Oecologia 1980; 46:135 - 137; http://dx.doi.org/10.1007/BF00346979
  • Loreto ELS, Carareto CMA, Capy P. Revisiting horizontal transfer of transposable elements in Drosophila. Heredity 2008; 100:545 - 554; PMID: 18431403; http://dx.doi.org/10.1038/sj.hdy.6801094
  • Silva JC, Kidwell MG. Horizontal transfer and selection in the evolution of P elements. Mol Biol Evol 2000; 17:1542 - 1557; PMID: 11018160
  • Bowen NJ, McDonald JF. Drosophila euchromatic LTR retrotransposons are much younger than the host species in which they reside. Genome Res 2001; 11:1527 - 1540; PMID: 11544196; http://dx.doi.org/10.1101/gr.164201
  • Ludwig A, Loreto ELS. Evolutionary pattern of the gtwin retrotransposon in the Drosophila melanogaster subgroup. Genetica 2007; 130:161 - 168; PMID: 16897442; http://dx.doi.org/10.1007/s10709-006-9003-y
  • Ludwig A, Valente V, Loreto ELS. Multiple invasions of Errantivirus in the genus Drosophila.. Insect Mol Biol 2008; 17:113 - 124; PMID: 18353101; http://dx.doi.org/10.1111/j.1365-2583.2007.00787.x
  • Bartolomé C, Bello X, Maside X. Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes. Genome Biol 2009; 10:R22; PMID: 19226459; http://dx.doi.org/10.1186/gb-200910-2-r22
  • Vidal NM, Ludwig A, Loreto ELS. Evolution of Tom, 297, 17.6 and rover retrotransposons in Drosophilidae species. Mol Genet Genomics 2009; 282:351 - 362; PMID: 19585148; http://dx.doi.org/10.1007/s00438009-0468-0
  • Diao X, Freeling M, Lisch D. Horizontal transfer of a plant transposon. PLoS Biol 2006; 4:e5; http://dx.doi.org/10.1371/journal.pbio.0040005
  • Sharp PM, Li WH. On the rate of DNA sequence evolution in Drosophila. J Mol Evol 1989; 28:398 - 402; PMID: 2501501; http://dx.doi.org/10.1007/BF02603075
  • Fraser MJ, Coszczon T, Elick T, Bauser C. Precise excision of TTAA-specific lepidopteran transposons piggyBac(IFP2) and tagalong (TFP3) from the baculovirus genome in cell lines from two species of Lepidoptera. Insect Mol Biol 1996; 5:141 - 151; PMID: 8673264; http://dx.doi.org/10.1111/j.1365-2583.1996.tb00048.x
  • Hotopp JCD, Clark ME, Oliveira D, Foster JM, Fischer P, Torres MC, et al. Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes. Science 2007; 317:1753 - 1756; PMID: 17761848; http://dx.doi.org/10.1126/science.1142490
  • Gilbert C, Schaack S, Pace JK, Brindley PJ, Feschotte C. A role for host-parasite interactions in the horizontal transfer of transposons across phyla. Nature 2010; 464:1347 - 1350; PMID: 20428170; http://dx.doi.org/10.1038/nature08939
  • Houck MA, Clark JB, Peterson KR, Kidwell MG. Possible horizontal transfer of Drosophila genes by the mite Proctolaelaps regalis.. Science 1991; 253:1125 - 1128; PMID: 1653453; http://dx.doi.org/10.1126/science.1653453
  • Yoshiyama M, Tu Z, Kainoh Y, Honda H, Shono T, Kimura K. Possible horizontal transfer of a transposable element from host to parasitoid. Mol Biol Evol 2001; 18:1952 - 1958; PMID: 11557800
  • Syomin BV, Kandror KV, Semakin AB, Tsuprun VL, Stepanov AS. Presence of the gypsy (mdg4) retrotransposon in extracellular virus-like particles. FEBS Lett 1993; 323:285 - 288; PMID: 7684710; http://dx.doi.org/10.1016/0014-5793(93)81358-7
  • Lachaise D, David JR, Lemeunier F, Tsacas L, Ashburner M. The reproductive relationships of Drosophila sechellia with Drosophila mauritiana, Drosophila simulans, and Drosophila melanogaster from the afrotropical region. Evolution 1986; 40:262 - 271; http://dx.doi.org/10.2307/2408806
  • Solignac M, Monnerot M. Race formation, speciation, and introgression within Drosophila simulans, Drosophila mauritiana, and Drosophila sechellia inferred from mitochondrial DNA analysis. Evolution 1986; 40:531 - 539; http://dx.doi.org/10.2307/2408575
  • Michalak P, Noor MAF. Association of misexpression with sterility in hybrids of Drosophila simulans and D. mauritiana. J Mol Evol 2004; 59:277 - 282; PMID: 15486701; http://dx.doi.org/10.1007/s00239-0042622-y
  • Sánchez-Gracia A, Maside X, Charlesworth B. High rate of horizontal transfer of transposable elements in Drosophila. Trends Genet 2005; 21:200 - 203; PMID: 15797612; http://dx.doi.org/10.1016/j.tig.2005.02.001
  • Lerat E, Burlet N, Biemont C, Vieira C. Comparative analysis of transposable elements in the melanogaster subgroup sequenced genomes. Gene 2011; 473:100 - 109; PMID: 21156200; http://dx.doi.org/10.1016/j.gene.2010.11.009
  • Lynch M, Conery JS. The origins of genome complexity. Science 2003; 302:1401 - 1404; PMID: 14631042; http://dx.doi.org/10.1126/science.1089370
  • Moriyama EN, Powell JR. Intraspecific nuclear DNA variation in Drosophila. Mol Biol Evol 1996; 13:261 - 277; PMID: 8583899
  • Aquadro CF, Lado KM, Noon WA. The rosy region of Drosophila melanogaster and Drosophila simulans. I. Contrasting levels of naturally occurring DNA restriction map variation and divergence. Genetics 1988; 119:875 - 888; PMID: 2900794
  • Nolte V, Schlotterer C. African Drosophila melanogaster and D. simulans populations have similar levels of sequence variability, suggesting comparable effective population sizes. Genetics 2008; 178:405 - 412; PMID: 18202383; http://dx.doi.org/10.1534/genetics.107.080200
  • Capy P. Evolutionary biology - A plastic genome. Nature 1998;; 396:522 - 523; PMID: 9859983; http://dx.doi.org/10.1038/25007
  • da Conceiçã Galego LGD, Carareto CMA. Scenario of the spread of the invasive species Zaprionus indianus Gupta, 1970 (Diptera, Drosophilidae) in Brazil. Genet Mol Biol 2010; 33:767 - 773; PMID: 21637589; http://dx.doi.org/10.1590/S1415-47572010005000080
  • Kimura K, Kidwell MG. Differences in P-element population dynamics between the sibling species Drosophila melanogaster and Drosophila simulans. Genet Res 1994; 63:27 - 38; PMID: 8206365; http://dx.doi.org/10.1017/S0016672300032055
  • Herédia F, Loreto ELS, Valente VLS. Complex evolution of gypsy in drosophilid species. Mol Biol Evol 2004; 21:1831 - 1842; PMID: 15175416; http://dx.doi.org/10.1093/molbev/msh183