989
Views
30
CrossRef citations to date
0
Altmetric
Extra View

Binding kinetics of human ISWI chromatin-remodelers to DNA repair sites elucidate their target location mechanism

&
Pages 105-112 | Received 13 Jan 2011, Accepted 18 Feb 2011, Published online: 28 Apr 2011

References

  • Erdel F, Schubert T, Marth C, Langst G, Rippe K. Human ISWI chromatin-remodeling complexes sample nucleosomes via transient binding reactions and become immobilized at active sites. Proc Natl Acad Sci USA 2010; 107:19873 - 19878
  • Rippe K, Schrader A, Riede P, Strohner R, Lehmann E, Langst G. DNA sequence- and conformation-directed positioning of nucleosomes by chromatin-remodeling complexes. Proc Natl Acad Sci USA 2007; 104:15635 - 15640
  • Jackson SP, Bartek J. The DNA-damage response in human biology and disease. Nature 2009; 461:1071 - 1078
  • Park JH, Park EJ, Lee HS, Kim SJ, Hur SK, Imbalzano AN, et al. Mammalian SWI/SNF complexes facilitate DNA double-strand break repair by promoting gamma-H2AX induction. EMBO J 2006; 25:3986 - 3997
  • Lee HS, Park JH, Kim SJ, Kwon SJ, Kwon J. A cooperative activation loop among SWI/SNF, gamma-H2AX and H3 acetylation for DNA double-strand break repair. EMBO J 2010; 29:1434 - 1445
  • Shim EY, Ma JL, Oum JH, Yanez Y, Lee SE. The yeast chromatin remodeler RSC complex facilitates end joining repair of DNA double-strand breaks. Mol Cell Biol 2005; 25:3934 - 3944
  • Xiao A, Li H, Shechter D, Ahn SH, Fabrizio LA, Erdjument-Bromage H, et al. WSTF regulates the H2A.X DNA damage response via a novel tyrosine kinase activity. Nature 2009; 457:57 - 62
  • Lan L, Ui A, Nakajima S, Hatakeyama K, Hoshi M, Watanabe R, et al. The ACF1 complex is required for DNA double-strand break repair in human cells. Mol Cell 2010; 40:976 - 987
  • Smeenk G, Wiegant WW, Vrolijk H, Solari AP, Pastink A, van Attikum H. The NuRD chromatin-remodeling complex regulates signaling and repair of DNA damage. J Cell Biol 2010; 190:741 - 749
  • Larsen DH, Poinsignon C, Gudjonsson T, Dinant C, Payne MR, Hari FJ, et al. The chromatin-remodeling factor CHD4 coordinates signaling and repair after DNA damage. J Cell Biol 2010; 190:731 - 740
  • Kashiwaba SI, Kitahashi K, Watanabe T, Onoda F, Ohtsu M, Murakami Y. The mammalian INO80 complex is recruited to DNA damage sites in an ARP8 dependent manner. Biochem Biophys Res Commun 2010; 402:619 - 625
  • Jiang Y, Wang X, Bao S, Guo R, Johnson DG, Shen X, et al. INO80 chromatin remodeling complex promotes the removal of UV lesions by the nucleotide excision repair pathway. Proc Natl Acad Sci USA 2010; 17274 - 17279
  • Morrison AJ, Highland J, Krogan NJ, Arbel-Eden A, Greenblatt JF, Haber JE, et al. INO80 and gamma-H2AX interaction links ATP-dependent chromatin remodeling to DNA damage repair. Cell 2004; 119:767 - 775
  • van Attikum H, Fritsch O, Gasser SM. Distinct roles for SWR1 and INO80 chromatin remodeling complexes at chromosomal double-strand breaks. EMBO J 2007; 26:4113 - 4125
  • van Attikum H, Fritsch O, Hohn B, Gasser SM. Recruitment of the INO80 complex by H2A phosphorylation links ATP-dependent chromatin remodeling with DNA double-strand break repair. Cell 2004; 119:777 - 788
  • Collins N, Poot RA, Kukimoto I, Garcia-Jimenez C, Dellaire G, Varga-Weisz PD. An ACF1-ISWI chromatin-remodeling complex is required for DNA replication through heterochromatin. Nat Genet 2002; 32:627 - 632
  • Mortusewicz O, Schermelleh L, Walter J, Cardoso MC, Leonhardt H. Recruitment of DNA methyl-transferase I to DNA repair sites. Proc Natl Acad Sci USA 2005; 102:8905 - 8909
  • Moldovan GL, Pfander B, Jentsch S. PCNA, the maestro of the replication fork. Cell 2007; 129:665 - 679
  • Poot R, Bozhenok L, van den Berg DL, Steffensen S, Ferreira F, Grimaldi M, et al. The Williams syndrome transcription factor interacts with PCNA to target chromatin remodelling by ISWI to replication foci. Nat Cell Biol 2004; 1236 - 1244
  • Yao N, Turner J, Kelman Z, Stukenberg PT, Dean F, Shechter D, et al. Clamp loading, unloading and intrinsic stability of the PCNA, beta and gp45 sliding clamps of human, E. coli and T4 replicases. Genes Cells 1996; 1:101 - 113
  • Erdel F, Müller-Ott K, Baum M, Wachsmuth M, Rippe K. Dissecting chromatin interactions in living cells from protein mobility maps. Chromosome Res 2011; 19:99 - 115
  • Kochaniak AB, Habuchi S, Loparo JJ, Chang DJ, Cimprich KA, Walter JC, et al. Proliferating cell nuclear antigen uses two distinct modes to move along DNA. J Biol Chem 2009; 284:17700 - 17710
  • Essers J, Theil AF, Baldeyron C, van Cappellen WA, Houtsmuller AB, Kanaar R, et al. Nuclear dynamics of PCNA in DNA replication and repair. Mol Cell Biol 2005; 25:9350 - 9359
  • Solomon DA, Cardoso MC, Knudsen ES. Dynamic targeting of the replication machinery to sites of DNA damage. J Cell Biol 2004; 166:455 - 463
  • Bowman GD, O'donnell M, Kuriyan J. Structural analysis of a eukaryotic sliding DNA clamp-clamp loader complex. Nature 2004; 429:724 - 730
  • Hashiguchi K, Matsumoto Y, Yasui A. Recruitment of DNA repair synthesis machinery to sites of DNA damage/repair in living human cells. Nucleic Acids Res 2007; 35:2913 - 2923
  • Overmeer RM, Gourdin AM, Giglia-Mari A, Kool H, Houtsmuller AB, Siegal G, et al. Replication factor C recruits DNA polymerase delta to sites of nucleotide excision repair but is not required for PCNA recruitment. Mol Cell Biol 2010; 30:4828 - 4839
  • Hemmerich P, Schmiedeberg L, Diekmann S. Dynamic as well as stable protein interactions contribute to genome function and maintenance. Chromosome Res 2011; 19:131 - 151
  • Sporbert A, Domaing P, Leonhardt H, Cardoso MC. PCNA acts as a stationary loading platform for transiently interacting Okazaki fragment maturation proteins. Nucleic Acids Res 2005; 33:3521 - 3528
  • Rogakou EP, Pilch DR, Orr AH, Ivanova VS, Bonner WM. DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139. J Biol Chem 1998; 273:5858 - 5868
  • Morris GF, Mathews MB. Regulation of proliferating cell nuclear antigen during the cell cycle. J Biol Chem 1989; 264:13856 - 13864
  • Wachsmuth M, Caudron-Herger M, Rippe K. Genome organization: Balancing stability and plasticity. Biochim Biophys Acta 2008; 1783:2061 - 2079
  • Hager GL, McNally JG, Misteli T. Transcription dynamics. Mol Cell 2009; 35:741 - 753
  • van Royen ME, Zotter A, Ibrahim SM, Geverts B, Houtsmuller AB. Nuclear proteins: finding and binding target sites in chromatin. Chromosome Res 2010;
  • Blossey R, Schiessel H. Kinetic proofreading of gene activation by chromatin remodeling. HFSP J 2008; 2:167 - 170
  • Narlikar GJ. A proposal for kinetic proof reading by ISWI family chromatin remodeling motors. Curr Opin Chem Biol 2010; 14:660 - 665
  • Corona DF, Langst G, Clapier CR, Bonte EJ, Ferrari S, Tamkun JW, et al. ISWI is an ATP-dependent nucleosome remodeling factor. Mol Cell 1999; 3:239 - 245
  • He X, Fan HY, Narlikar GJ, Kingston RE. Human ACF1 alters the remodeling strategy of SNF2 h. J Biol Chem 2006; 281:28636 - 28647