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Research Paper

Duration of the first steps of the human rRNA processing

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Pages 134-141 | Published online: 14 Feb 2013

References

  • Kominami R, Urano Y, Mishima Y, Muramatsu M. Organization of ribosomal RNA gene repeats of the mouse. Nucleic Acids Res 1981; 9:3219 - 33; http://dx.doi.org/10.1093/nar/9.14.3219; PMID: 6269075
  • Gonzalez IL, Sylvester JE. Complete sequence of the 43-kb human ribosomal DNA repeat: analysis of the intergenic spacer. Genomics 1995; 27:320 - 8; http://dx.doi.org/10.1006/geno.1995.1049; PMID: 7557999
  • Eichler DC, Craig N. Processing of eukaryotic ribosomal RNA. Prog Nucleic Acid Res Mol Biol 1994; 49:197 - 239; http://dx.doi.org/10.1016/S0079-6603(08)60051-3; PMID: 7863007
  • Fatica A, Tollervey D. Making ribosomes. Curr Opin Cell Biol 2002; 14:313 - 8; http://dx.doi.org/10.1016/S0955-0674(02)00336-8; PMID: 12067653
  • Gerbi SA, Borovjagin AV. Pre-Ribosomal RNA Processing in Multicellular Organisms. In: Olson MOJ, ed. The Nucleolus: Springer, 2004:170-98.
  • Granneman S, Baserga SJ. Crosstalk in gene expression: coupling and co-regulation of rDNA transcription, pre-ribosome assembly and pre-rRNA processing. Curr Opin Cell Biol 2005; 17:281 - 6; http://dx.doi.org/10.1016/j.ceb.2005.04.001; PMID: 15901498
  • Raska I, Shaw PJ, Cmarko D. New insights into nucleolar architecture and activity. Int Rev Cytol 2006; 255:177 - 235; http://dx.doi.org/10.1016/S0074-7696(06)55004-1; PMID: 17178467
  • Henras AK, Soudet J, Gérus M, Lebaron S, Caizergues-Ferrer M, Mougin A, et al. The post-transcriptional steps of eukaryotic ribosome biogenesis. Cell Mol Life Sci 2008; 65:2334 - 59; http://dx.doi.org/10.1007/s00018-008-8027-0; PMID: 18408888
  • Nazar RN. Ribosomal RNA processing and ribosome biogenesis in eukaryotes. IUBMB Life 2004; 56:457 - 65; http://dx.doi.org/10.1080/15216540400010867; PMID: 15545225
  • Mullineux ST, Lafontaine DLJ. Mapping the cleavage sites on mammalian pre-rRNAs: where do we stand?. Biochimie 2012; 94:1521 - 32; http://dx.doi.org/10.1016/j.biochi.2012.02.001; PMID: 22342225
  • Kass S, Craig N, Sollner-Webb B. Primary processing of mammalian rRNA involves two adjacent cleavages and is not species specific. Mol Cell Biol 1987; 7:2891 - 8; PMID: 3670298
  • Strezoska Z, Pestov DG, Lau LF. Functional inactivation of the mouse nucleolar protein Bop1 inhibits multiple steps in pre-rRNA processing and blocks cell cycle progression. J Biol Chem 2002; 277:29617 - 25; http://dx.doi.org/10.1074/jbc.M204381200; PMID: 12048210
  • Kent T, Lapik YR, Pestov DG. The 5′ external transcribed spacer in mouse ribosomal RNA contains two cleavage sites. RNA 2009; 15:14 - 20; http://dx.doi.org/10.1261/rna.1384709; PMID: 19029311
  • Bonnart C, Gérus M, Hoareau-Aveilla C, Kiss T, Caizergues-Ferrer M, Henry Y, et al. Mammalian HCA66 protein is required for both ribosome synthesis and centriole duplication. Nucleic Acids Res 2012; 40:6270 - 89; http://dx.doi.org/10.1093/nar/gks234; PMID: 22434888
  • Gérus M, Bonnart C, Caizergues-Ferrer M, Henry Y, Henras AK. Evolutionarily conserved function of RRP36 in early cleavages of the pre-rRNA and production of the 40S ribosomal subunit. Mol Cell Biol 2010; 30:1130 - 44; http://dx.doi.org/10.1128/MCB.00999-09; PMID: 20038530
  • Lazdins IB, Delannoy M, Sollner-Webb B. Analysis of nucleolar transcription and processing domains and pre-rRNA movements by in situ hybridization. Chromosoma 1997; 105:481 - 95; http://dx.doi.org/10.1007/BF02510485; PMID: 9211976
  • Bustin SA, Nolan T. Pitfalls of quantitative real-time reverse-transcription polymerase chain reaction. J Biomol Tech 2004; 15:155 - 66; PMID: 15331581
  • VanGuilder HD, Vrana KE, Freeman WM. Twenty-five years of quantitative PCR for gene expression analysis. Biotechniques 2008; 44:619 - 26; http://dx.doi.org/10.2144/000112776; PMID: 18474036
  • Hadjiolova KV, Nicoloso M, Mazan S, Hadjiolov AA, Bachellerie JP. Alternative pre-rRNA processing pathways in human cells and their alteration by cycloheximide inhibition of protein synthesis. Eur J Biochem 1993; 212:211 - 5; http://dx.doi.org/10.1111/j.1432-1033.1993.tb17652.x; PMID: 8444156
  • Puvion-Dutilleul F, Mazan S, Nicoloso M, Pichard E, Bachellerie JP, Puvion E. Alterations of nucleolar ultrastructure and ribosome biogenesis by actinomycin D. Implications for U3 snRNP function. Eur J Cell Biol 1992; 58:149 - 62; PMID: 1386570
  • Puvion-Dutilleul F, Puvion E, Bachellerie JP. Early stages of pre-rRNA formation within the nucleolar ultrastructure of mouse cells studied by in situ hybridization with a 5’ETS leader probe. Chromosoma 1997; 105:496 - 505; http://dx.doi.org/10.1007/BF02510486; PMID: 9211977
  • Kass S, Tyc K, Steitz JA, Sollner-Webb B. The U3 small nucleolar ribonucleoprotein functions in the first step of preribosomal RNA processing. Cell 1990; 60:897 - 908; http://dx.doi.org/10.1016/0092-8674(90)90338-F; PMID: 2156625
  • Tollervey D, Hurt EC. The role of small nucleolar ribonucleoproteins in ribosome synthesis. Mol Biol Rep 1990; 14:103 - 6; http://dx.doi.org/10.1007/BF00360433; PMID: 2141891
  • Reichow SL, Hamma T, Ferré-D’Amaré AR, Varani G. The structure and function of small nucleolar ribonucleoproteins. Nucleic Acids Res 2007; 35:1452 - 64; http://dx.doi.org/10.1093/nar/gkl1172; PMID: 17284456
  • Parker KA, Bond U. Analysis of pre-rRNAs in heat-shocked HeLa cells allows identification of the upstream termination site of human polymerase I transcription. Mol Cell Biol 1989; 9:2500 - 12; PMID: 2761537
  • Perry RP, Kelley DE. Persistent synthesis of 5S RNA when production of 28S and 18S ribosomal RNA is inhibited by low doses of actinomycin D. J Cell Physiol 1968; 72:235 - 46; http://dx.doi.org/10.1002/jcp.1040720311; PMID: 5724574
  • Hadjiolova KV, Hadjiolov AA, Bachellerie JP. Actinomycin D stimulates the transcription of rRNA minigenes transfected into mouse cells. Implications for the in vivo hypersensitivity of rRNA gene transcription. Eur J Biochem 1995; 228:605 - 15; http://dx.doi.org/10.1111/j.1432-1033.1995.0605m.x; PMID: 7737154
  • Shcherbik N, Wang M, Lapik YR, Srivastava L, Pestov DG. Polyadenylation and degradation of incomplete RNA polymerase I transcripts in mammalian cells. EMBO Rep 2010; 11:106 - 11; http://dx.doi.org/10.1038/embor.2009.271; PMID: 20062005
  • Miller KG, Sollner-Webb B. Transcription of mouse rRNA genes by RNA polymerase I: in vitro and in vivo initiation and processing sites. Cell 1981; 27:165 - 74; http://dx.doi.org/10.1016/0092-8674(81)90370-6; PMID: 7326749
  • Financsek I, Mizumoto K, Mishima Y, Muramatsu M. Human ribosomal RNA gene: nucleotide sequence of the transcription initiation region and comparison of three mammalian genes. Proc Natl Acad Sci U S A 1982; 79:3092 - 6; http://dx.doi.org/10.1073/pnas.79.10.3092; PMID: 6954460
  • Koberna K, Malínský J, Pliss A, Masata M, Vecerova J, Fialová M, et al. Ribosomal genes in focus: new transcripts label the dense fibrillar components and form clusters indicative of “Christmas trees” in situ. J Cell Biol 2002; 157:743 - 8; http://dx.doi.org/10.1083/jcb.200202007; PMID: 12034768
  • Balda M. LMFnlsq - Solution of nonlinear least squares. MathWorks, MATLAB Central, File Exchange, Id=17534. 2008. [Online, http://www.mathworks.com/matlabcentral/fileexchange/17534, of 12.11.2012].

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