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RESEARCH PAPER

Regulation of MAP kinase signaling cascade by microRNAs in Oryza sativa

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Article: e972130 | Received 10 Jun 2014, Accepted 01 Jul 2014, Published online: 22 Dec 2014

References

  • Stone JM, Walker JC. Plant protein kinase families and signal transduction. Plant Physiol 1995; 108:451-7; PMID:7610156; http://dx.doi.org/10.1104/pp.108.2.451
  • Kumar K, Rao KP, Sharma P, Sinha AK. Differential regulation of rice mitogen activated protein kinase kinase (MKK) by abiotic stress. Plant physiology and biochemistry: PPB / Societe francaise de physiologie vegetale 2008; 46:891-7.
  • Hamel LP, Nicole MC, Sritubtim S, Morency MJ, Ellis M, Ehlting J, Beaudoin N, Barbazuk B, Klessig D, Lee J, et al. Ancient signals: comparative genomics of plant MAPK and MAPKK gene families. Trends Plant Sci 2006; 11:192-8; PMID:16537113; http://dx.doi.org/10.1016/j.tplants.2006.02.007
  • Rao KP, Richa T, Kumar K, Raghuram B, Sinha AK. In silico analysis reveals 75 members of mitogen-activated protein kinase kinase kinase gene family in rice. DNA research: an international journal for rapid publication of reports on genes and genomes 2010; 17:139-53.
  • Wankhede DP, Misra M, Singh P, Sinha AK. Rice mitogen activated protein kinase kinase and mitogen activated protein kinase interaction network revealed by in-silico docking and yeast two-hybrid approaches. PLoS One 2013; 8:e65011; PMID:23738013; http://dx.doi.org/10.1371/journal.pone.0065011
  • Paroo Z, Ye X, Chen S, Liu Q. Phosphorylation of the human microRNA-generating complex mediates MAPK/Erk signaling. Cell 2009; 139:112-22; PMID: 19804757; http://dx.doi.org/10.1016/j.cell.2009.06.044
  • Voinnet O. Origin, biogenesis, and activity of plant microRNAs. Cell 2009; 136:669-87; PMID:19239888; http://dx.doi.org/10.1016/j.cell.2009.01.046
  • Wrzaczek M, Hirt H. Plant MAP kinase pathways: how many and what for? Biology of the cell / under the auspices of the European Cell Biology Organization 2001; 93:81-7.
  • Hauser F, Chen W, Deinlein U, Chang K, Ossowski S, Fitz J, Hannon GJ, Schroeder JI. A genomic-scale artificial microRNA library as a tool to investigate the functionally redundant gene space in Arabidopsis. Plant Cell 2013; 25:2848-63; PMID:23956262; http://dx.doi.org/10.1105/tpc.113.112805
  • Johnson SM, Grosshans H, Shingara J, Byrom M, Jarvis R, Cheng A, Labourier E, Reinert KL, Brown D, Slack FJ. RAS is regulated by the let-7 microRNA family. Cell 2005; 120:635-47; PMID:15766527; http://dx.doi.org/10.1016/j.cell.2005.01.014
  • Rusinov V, Baev V, Minkov IN, Tabler M. MicroInspector: a web tool for detection of miRNA binding sites in an RNA sequence. Nucleic Acids Res 2005; 33:W696-700; PMID:15980566; http://dx.doi.org/10.1093/nar/gki364
  • Siré C, Moreno AB, Garcia-Chapa M, López-Moya JJ, San Segundo B. Diurnal oscillation in the accumulation of Arabidopsis microRNAs, miR167, miR168, miR171 and miR398. FEBS Lett 2009; 583:1039-44; PMID:19236868; http://dx.doi.org/10.1016/j.febslet.2009.02.024
  • Zhou L, Liu Y, Liu Z, Kong D, Duan M, Luo L. Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa. J Exp Bot 2010; 61:4157-68; PMID:20729483; http://dx.doi.org/10.1093/jxb/erq237
  • Yoo SD, Cho YH, Tena G, Xiong Y, Sheen J. Dual control of nuclear EIN3 by bifurcate MAPK cascades in C2H4 signalling. Nature 2008; 451:789-95; PMID: 18273012; http://dx.doi.org/10.1038/nature06543
  • Zhao C, Nie H, Shen Q, Zhang S, Lukowitz W, Tang D. EDR1 physically interacts with MKK4/MKK5 and negatively regulates a MAP kinase cascade to modulate plant innate immunity. PLoS Genet 2014; 10:e1004389; PMID: 24830651; http://dx.doi.org/10.1371/journal.pgen.1004389
  • Kozomara A, Griffiths-Jones S. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res 2011; 39:D152-7; PMID: 21037258; http://dx.doi.org/10.1093/nar/gkq1027
  • Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, Childs K, Thibaud-Nissen F, Malek RL, Lee Y, Zheng L, et al. The TIGR Rice Genome Annotation Resource: improvements and new features. Nucleic Acids Res 2007; 35:D883-7; PMID:17145706; http://dx.doi.org/10.1093/nar/gkl976
  • Zhang Z, Yu J, Li D, Zhang Z, Liu F, Zhou X, Wang T, Ling Y, Su Z. PMRD: plant microRNA database. Nucleic Acids Res 2010; 38:D806-13; PMID: 19808935; http://dx.doi.org/10.1093/nar/gkp818
  • Dai X, Zhao PX. psRNATarget: a plant small RNA target analysis server. Nucleic Acids Res 2011; 39:W155-9; PMID:21622958; http://dx.doi.org/10.1093/nar/gkr319
  • Varkonyi-Gasic E, Wu R, Wood M, Walton EF, Hellens RP. Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs. Plant Methods 2007; 3:12; PMID:17931426; http://dx.doi.org/10.1186/1746-4811-3-12
  • Patel RK, Jain M. PlantRGS: a web server for the identification of most suitable candidate reference genes for quantitative gene expression studies in plants. DNA research: an international journal for rapid publication of reports on genes and genomes 2011; 18:463-70.
  • Krüger J, Rehmsmeier M. RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Res 2006; 34:W451-4; PMID:16845047; http://dx.doi.org/10.1093/nar/gkl243

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