821
Views
33
CrossRef citations to date
0
Altmetric
Research Paper

TheArabidopsis Chromatin Modifier ATX1, the Myotubularin-like AtMTM, and the response to Drought; a view from the other end of the pathway

Pages 1049-1058 | Received 15 Sep 2009, Accepted 15 Sep 2009, Published online: 01 Nov 2009

References

  • Kouzarides T. Chromatin modifications and their function. Cell 2007; 128:1 - 4
  • Grimaud C, Negre N, Cavalli G. From genetics to epigenetics: the tale of Polycomb group and trithorax group genes. Chromosome Res 2006; 14:363 - 375
  • Kiefer JC. Epigenetics in development. Dev Dyn 2007; 236:1144 - 1156
  • Bird A. Perceptions of epigenetics. Nature 2007; 447:396 - 398
  • Sparmann A, van Lohuizen M. Polycomb silencers control cell fate, development and cancer. Nat Rev Cancer 2006; 6:846 - 856
  • Pien S, Grossniklaus U. Polycomb group and trithorax group proteins in Arabidopsis. Biochim Biophys Acta 2007; 1769:375 - 382
  • Álvarez-Venegas R, Al-Abdallat A, Guo M, Alfano JP, Avramova Z. Epigenetic control of a transcription factor at the cross section of two antagonistic pathways. Epigenetics 2007; 3:106 - 113
  • Van den Burg HA, Takken FLW. Does chromatin remodeling mark systemic acquired resistance?. Trends Plant Sci 2009; 14 286 294
  • Álvarez-Venegas R, Sadder M, Hlavacka A, Baluška F, Xia Y, Lu G, et al. The Arabidopsis Homolog of Trithorax, ATX1, Binds Phosphoinositide 5-Phosphate and the Two Regulate a Common Set of Target Genes. Proc Natl Acad Sci 2006; 103:6049 - 6054
  • Kim JM, To TK, Ishida J, Morosawa T, Kawashima M, Matsui A, et al. Alterations of lysine modifications on the histone H3 N-tail under drought stress conditions in Arabidopsis thaliana. Plant Cell Phys 2008; 49:1580 - 1588
  • Bergman A, Siegal ML. Evolutionary capacitance as a general feature of complex gene networks. Nature 2003; 424:549 - 552
  • Lee I, Lehner B, Crombie C, Wong W, Fraser AG, Marcotte EM. A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans. Nat Genet 2008; 40:181 - 188
  • Lehner B, Crombie C, Tischler J, Fortunato A, Fraser AG. Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways. Nat Genet 2006; 38:896 - 903
  • Álvarez-Venegas R, Avramova Z. Methylation Patterns of Histone H3 Lys4, Lys 9 and Lys 27 in transcriptionally active and inactive Arabidopsis genes and in atx1 mutants. Nucl Acids Res 2005; 33:5199 - 5207
  • Saleh A, Alvarez-Venegas R, Yilmaz M, Le O, Hou G, Sadder M, et al. The Highly Similar Arabidopsis Homologs of Trithorax ATX1 and ATX2 Encode Proteins with Divergent Biochemical Functions. Plant Cell 2008; 20:568 - 579
  • Álvarez-Venegas R, Xia Y, Lu G, Avramova Z. Phosphoinositide 5-phosphate and phosphoinositide 4-phosphate trigger distinct specific responses of Arabidopsis genes; genome-wide transcript levels analyses. Plant Signal Behavior 2006; 1:140 - 151
  • Dove SK, Cooke FT, Douglas MR, Sayers LG, Parker PJ, Michell RH. Osmotic stress activates phosphatidyl-D-inositol 3,5-bisphosphate synthesis in yeast. Nature 1997; 190:187 - 192
  • Blondeau F, Laporte J, Bodin S, Superti-Furga G, Payrastre B, Mandel JL. Myotubularin, a phosphatase deficient in myotubular myopathy, acts on phosphatidylinositol 3-kinase and phosphatidylinositol 3-phosphate pathway. Hum Mol Genet 2000; 9:2223 - 2229
  • Sbrissa D, Ikonomov O, Deeb R, Shisheva A. Phosphatidylinositol 5-phosphate biosynthesis is linked to PIKfyve and is involved in osmotic response pathway in mammalian cells. J Biol Chem 2002; 277:47276 - 47284
  • Meijer HJG, Berrier CP, Iurisci C, Divecha N, Musgrave A, Munnik T. Hyperosmotic stress induces rapid synthesis of phosphatidyl-D-inositol 3,5-bisphosphate in plant cells. Biochem J 2001; 360:491 - 498
  • Pical C, Westergren T, Dove SK, Larsson, Sommarin M. Salinity and hyperosmotic stress induce rapid increases in phosphatidylinositol 4,5-bisphosphate, diacylglycerol phosphate and phosphatydylcholine in Arabidopsis thaliana cells. J Biol Chem 1999; 274:38232 - 38240
  • Berger P, Bonneick S, Willi S, Wymann M, Suter U. Loss of phosphatase activity in myotubularin-related protein 2 is associated with Charcot-Marie-Tooth disease type 4B1. Hum Mol Genet 2002; 15:1569 - 1579
  • Lorenzo O, Urbé S, Clague MJ. Analysis of phosphoinositide binding domain properties within the myotubularin-related protein MTMR3. J Cell Sci 2005; 118:2005 - 2012
  • Kim SA, Taylor GS, Torgersen KM, Dixon JE. Myotubularin and MTMR2, phosphatidylinositol 3-phosphatases mutated in myotubular myopathy and type 4B Charcot-Marie-Tooth disease. J Biol Chem 2002; 277:4526 - 4531
  • Clague MJ, Lorenzo O. The myotubularin family of lipid phosphatases. Traffic 2005; 6:1 - 7
  • Pendaries C, Tronchere H, Racaud-Sultan C, Gaits-Iacovoni F, Coronas S, Manenti S, et al. Emerging roles of phosphatidyl inositol monophosphates in cellular signaling and trafficking. Adv Enzyme Reg 2005; 45:201 - 204
  • Robinson FL, Dixon J. Myotubularin phosphatases: policing 3-phosphoinositides. Trends Cell Biol 2006; 16:403 - 412
  • Schaletzky J, Dove SK, Short B, Lorenzo O, Clague MJ, Barr FA. Phosphatidylinositol-5-phosphate activation and conserved substrate specificity of the myotubularin phosphatidylinositol 3-phosphatases. Curr Biol 2003; 13:504 - 509
  • Karimi M, Inze D, Depicker A. Gateway vectors for Agrobacterium-mediated plant transformation. Trends Plant Sci 2002; 7:193 - 195
  • Clough SJ, Bent AF. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 1998; 16:735 - 743
  • Martin B, Pallen CJ, Wang JH, Graves DJ. Use of fluorinated tyrosine phosphates to probe the substrate specificity of the low molecular weight phosphatase activity of calcineurin. J Biol Chem 1985; 260:14932 - 14937
  • Lu G, Nguyen TV, Xiao Y, Fromm M. AffyMiner: mining differentially expressed genes and biological knowledge in GeneChip microarray data. BMC Bioinformatics 2006; 7:26
  • Begley MI, Dixon JE. The structure and regulation of myotubularin phosphatases. Curr Opin Struct Biol 2005; 15:614 - 620
  • Begley MJ, Taylor GS, Brock MA, Ghosh P, Woods VL, Dixon JE. Molecular basis for substrate recognition by MTMR2, a myotubularin family phosphoinositide phosphatase. Proc Natl Acad Sci 2006; 103:927 - 932
  • Álvarez-Venegas R, Pien S, Sadder M, Witmer X, Grossniklaus U, Avramova Z. ATX-1, an Arabidopsis homolog of trithorax, activates flower homeotic genes. Curr Biol 2003; 13:627 - 637
  • Qin F, Sakuma Y, Tran LS, Maruyama K, Kidokoro S, Fujita Y, et al. Arabidopsis DREB2A-interacting proteins function as RING E3 ligases and negatively regulate plant drought stress-responsive gene transcript levels. Plant Cell 2008; 20:1693 - 1707
  • Yamaguchi-Shinozaki K, Shinozaki K. Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stress. Annu Rev Plant Biol 2006; 57:781 - 803
  • Ndamukong I, Chetram A, Saleh A, Avramova Z. Wall-modifying genes regulated by the Arabidopsis homolog of trithorax, ATX1; repression of the XTH33 gene as a test case. Plant J 2009; 58:541 - 553
  • Tronchere H, Laporte J, Pendaries C, Chaussade C, Liaubet L, Pirola L, et al. Production of phosphatidylinositol 5-phosphate by the phosphoinositide 3-phosphatase myotubularin in mammalian cells. J Biol Chem 2004; 279:7304 - 7312
  • Cui X, De Vivo I, Slany R, Miyamoto A, Firestein R, Claery ML. Association of SET domain and myotubularin-related proteins modulates growth control. Nat Genet 1998; 18:303 - 305
  • Firestein R, Cui X, Huie P, Claery ML. Set domain dependent regulation of transcriptional silencing and growth control by SUV39H1, a mammalian ortholog of Drosophila Su(var)3–9. Mol Cell Biol 2000; 20:4900 - 4909
  • Petruk S, Sedkov Y, Smith S, Tillib S, Kraevski V, Nakamura T, et al. Trithorax and dCBP acting in a complex to maintain transcript levels of a homeotic gene. Science 2001; 294:1331 - 1334
  • Firestein R, Cleary ML. Pseudo phosphatase Sbf1 contains an N-terminal GEF homology domain that modulates its growth regulatory properties. J Cell Sci 2001; 114:2921 - 2927
  • Irvine RF. Nuclear lipid signaling. Nature Rev 2003; 4:1 - 12
  • Jones DR, Divecha N. Linking lipids to chromatin. Curr Opin Genet Develop 2004; 14:196 - 202

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.