Type I toxin-antitoxin systems in Bacillus subtilis

References

• Van Melderen L, Saavedra De Bast M. Bacterial toxin-antitoxin systems: more than selfish entities?. PLoS Genet 2009; 5:e1000437; http://dx.doi.org/10.1371/journal.pgen.1000437; PMID: 19325885
   PubMed Web of Science ®Google Scholar
• Van Melderen L. Toxin-antitoxin systems: why so many, what for?. Curr Opin Microbiol 2010; 13:781 - 5; http://dx.doi.org/10.1016/j.mib.2010.10.006; PMID: 21041110
   PubMed Web of Science ®Google Scholar
• Fineran PC, Blower TR, Foulds IJ, Humphreys DP, Lilley KS, Salmond GP. The phage abortive infection system, ToxIN, functions as a protein-RNA toxin-antitoxin pair. Proc Natl Acad Sci U S A 2009; 106:894 - 9; http://dx.doi.org/10.1073/pnas.0808832106; PMID: 19124776
   PubMed Web of Science ®Google Scholar
• Blower TR, Short FL, Rao F, Mizuguchi K, Pei XY, Fineran PC, et al. Identification and classification of bacterial Type III toxin-antitoxin systems encoded in chromosomal and plasmid genomes. Nucleic Acids Res 2012; 40:6158 - 73; http://dx.doi.org/10.1093/nar/gks231; PMID: 22434880
   PubMed Web of Science ®Google Scholar
• Greenfield TJ, Weaver KE. Antisense RNA regulation of the pAD1 par post-segregational killing system requires interaction at the 5′ and 3′ ends of the RNAs. Mol Microbiol 2000; 37:661 - 70; http://dx.doi.org/10.1046/j.1365-2958.2000.02034.x; PMID: 10931359
   PubMed Web of Science ®Google Scholar
• Weaver KE, Jensen KD, Colwell A, Sriram SI. Functional analysis of the Enterococcus faecalis plasmid pAD1-encoded stability determinant par. Mol Microbiol 1996; 20:53 - 63; http://dx.doi.org/10.1111/j.1365-2958.1996.tb02488.x; PMID: 8861204
   PubMed Web of Science ®Google Scholar
• Weaver KE, Reddy SG, Brinkman CL, Patel S, Bayles KW, Endres JL. Identification and characterization of a family of toxin-antitoxin systems related to the Enterococcus faecalis plasmid pAD1 par addiction module. Microbiology 2009; 155:2930 - 40; http://dx.doi.org/10.1099/mic.0.030932-0; PMID: 19542006
   PubMed Web of Science ®Google Scholar
• Silvaggi JM, Perkins JB, Losick R. Small untranslated RNA antitoxin in Bacillus subtilis.. J Bacteriol 2005; 187:6641 - 50; http://dx.doi.org/10.1128/JB.187.19.6641-6650.2005; PMID: 16166525
   PubMed Web of Science ®Google Scholar
• Irnov I, Sharma CM, Vogel J, Winkler WC. Identification of regulatory RNAs in Bacillus subtilis.. Nucleic Acids Res 2010; 38:6637 - 51; http://dx.doi.org/10.1093/nar/gkq454; PMID: 20525796
   PubMed Web of Science ®Google Scholar
• Fozo EM, Makarova KS, Shabalina SA, Yutin N, Koonin EV, Storz G. Abundance of type I toxin-antitoxin systems in bacteria: searches for new candidates and discovery of novel families. Nucleic Acids Res 2010; 38:3743 - 59; http://dx.doi.org/10.1093/nar/gkq054; PMID: 20156992
   PubMed Web of Science ®Google Scholar
• Jahn N, Preis H, Wiedemann C, Brantl S. BsrG/SR4 from Bacillus subtilis--the first temperature-dependent type I toxin-antitoxin system. Mol Microbiol 2012; 83:579 - 98; http://dx.doi.org/10.1111/j.1365-2958.2011.07952.x; PMID: 22229825
   PubMed Web of Science ®Google Scholar
• Brantl S. Regulatory mechanisms employed by cis-encoded antisense RNAs. Curr Opin Microbiol 2007; 10:102 - 9; http://dx.doi.org/10.1016/j.mib.2007.03.012; PMID: 17387036
   PubMed Web of Science ®Google Scholar
• Nakano MM, Zuber P, Glaser P, Danchin A, Hulett FM. Two-component regulatory proteins ResD-ResE are required for transcriptional activation of fnr upon oxygen limitation in Bacillus subtilis.. J Bacteriol 1996; 178:3796 - 802; PMID: 8682783
   PubMed Web of Science ®Google Scholar
• Saito S, Kakeshita H, Nakamura K. Novel small RNA-encoding genes in the intergenic regions of Bacillus subtilis.. Gene 2009; 428:2 - 8; http://dx.doi.org/10.1016/j.gene.2008.09.024; PMID: 18948176
   PubMed Web of Science ®Google Scholar
• Kodama T, Matsubayashi T, Yanagihara T, Komoto H, Ara K, Ozaki K, et al. A novel small protein of Bacillus subtilis involved in spore germination and spore coat assembly. Biosci Biotechnol Biochem 2011; 75:1119 - 28; http://dx.doi.org/10.1271/bbb.110029; PMID: 21670523
   PubMed Web of Science ®Google Scholar
• Nicolas P, Mäder U, Dervyn E, Rochat T, Leduc A, Pigeonneau N, et al. Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.. Science 2012; 335:1103 - 6; http://dx.doi.org/10.1126/science.1206848; PMID: 22383849
   PubMed Web of Science ®Google Scholar
• Durand S, Gilet L, Bessières P, Nicolas P, Condon C. Three essential ribonucleases-RNase Y, J1 and III-control the abundance of a majority of Bacillus subtilis mRNAs. PLoS Genet 2012; 8:e1002520; http://dx.doi.org/10.1371/journal.pgen.1002520; PMID: 22412379
   PubMed Web of Science ®Google Scholar
• Fozo EM, Kawano M, Fontaine F, Kaya Y, Mendieta KS, Jones KL, et al. Repression of small toxic protein synthesis by the Sib and OhsC small RNAs. Mol Microbiol 2008; 70:1076 - 93; http://dx.doi.org/10.1111/j.1365-2958.2008.06394.x; PMID: 18710431
   PubMed Web of Science ®Google Scholar
• Gerdes K, Wagner EG. RNA antitoxins. Curr Opin Microbiol 2007; 10:117 - 24; http://dx.doi.org/10.1016/j.mib.2007.03.003; PMID: 17376733
   PubMed Web of Science ®Google Scholar
• Fozo EM, Hemm MR, Storz G. Small toxic proteins and the antisense RNAs that repress them. Microbiol Mol Biol Rev 2008; 72:579 - 89; http://dx.doi.org/10.1128/MMBR.00025-08; PMID: 19052321
   PubMed Web of Science ®Google Scholar
• Condon C, Bechhofer DH. Regulated RNA stability in the Gram positives. Curr Opin Microbiol 2011; 14:148 - 54; http://dx.doi.org/10.1016/j.mib.2011.01.010; PMID: 21334965
   PubMed Web of Science ®Google Scholar
• Shokeen S, Patel S, Greenfield TJ, Brinkman C, Weaver KE. Translational regulation by an intramolecular stem-loop is required for intermolecular RNA regulation of the par addiction module. J Bacteriol 2008; 190:6076 - 83; http://dx.doi.org/10.1128/JB.00660-08; PMID: 18641135
   PubMed Web of Science ®Google Scholar
• Daou-Chabo R, Mathy N, Bénard L, Condon C. Ribosomes initiating translation of the hbs mRNA protect it from 5′-to-3′ exoribonucleolytic degradation by RNase J1. Mol Microbiol 2009; 71:1538 - 50; http://dx.doi.org/10.1111/j.1365-2958.2009.06620.x; PMID: 19210617
   PubMed Web of Science ®Google Scholar
• Li GW, Oh E, Weissman JS. The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria. Nature 2012; 484:538 - 41; http://dx.doi.org/10.1038/nature10965; PMID: 22456704
   PubMed Web of Science ®Google Scholar
• Hajnsdorf E, Boni IV. Multiple activities of RNA-binding proteins S1 and Hfq. Biochimie 2012; 94:1544 - 53; http://dx.doi.org/10.1016/j.biochi.2012.02.010; PMID: 22370051
   PubMed Web of Science ®Google Scholar
• Nielsen JS, Lei LK, Ebersbach T, Olsen AS, Klitgaard JK, Valentin-Hansen P, et al. Defining a role for Hfq in Gram-positive bacteria: evidence for Hfq-dependent antisense regulation in Listeria monocytogenes.. Nucleic Acids Res 2010; 38:907 - 19; http://dx.doi.org/10.1093/nar/gkp1081; PMID: 19942685
   PubMed Web of Science ®Google Scholar
• Heidrich N, Moll I, Brantl S. In vitro analysis of the interaction between the small RNA SR1 and its primary target ahrC mRNA. Nucleic Acids Res 2007; 35:4331 - 46; http://dx.doi.org/10.1093/nar/gkm439; PMID: 17576690
   PubMed Web of Science ®Google Scholar
• Vogel J, Argaman L, Wagner EG, Altuvia S. The small RNA IstR inhibits synthesis of an SOS-induced toxic peptide. Curr Biol 2004; 14:2271 - 6; http://dx.doi.org/10.1016/j.cub.2004.12.003; PMID: 15620655
   PubMed Web of Science ®Google Scholar
• Kawano M, Aravind L, Storz G. An antisense RNA controls synthesis of an SOS-induced toxin evolved from an antitoxin. Mol Microbiol 2007; 64:738 - 54; http://dx.doi.org/10.1111/j.1365-2958.2007.05688.x; PMID: 17462020
   PubMed Web of Science ®Google Scholar
• Dörr T, Vulić M, Lewis K. Ciprofloxacin causes persister formation by inducing the TisB toxin in Escherichia coli.. PLoS Biol 2010; 8:e1000317; http://dx.doi.org/10.1371/journal.pbio.1000317; PMID: 20186264
   PubMed Web of Science ®Google Scholar
• Kunkel B, Losick R, Stragier P. The Bacillus subtilis gene for the development transcription factor sigma K is generated by excision of a dispensable DNA element containing a sporulation recombinase gene. Genes Dev 1990; 4:525 - 35; http://dx.doi.org/10.1101/gad.4.4.525; PMID: 2163341
   PubMed Web of Science ®Google Scholar
• Popham DL, Stragier P. Binding of the Bacillus subtilis spoIVCA product to the recombination sites of the element interrupting the sigma K-encoding gene. Proc Natl Acad Sci U S A 1992; 89:5991 - 5; http://dx.doi.org/10.1073/pnas.89.13.5991; PMID: 1631085
   PubMed Web of Science ®Google Scholar
• Krogh S, O’Reilly M, Nolan N, Devine KM. The phage-like element PBSX and part of the skin element, which are resident at different locations on the Bacillus subtilis chromosome, are highly homologous. Microbiology 1996; 142:2031 - 40; http://dx.doi.org/10.1099/13500872-142-8-2031; PMID: 8760915
   PubMed Web of Science ®Google Scholar