Diversity of CRISPR systems in the euryarchaeal Pyrococcales

References

• Grissa I, Vergnaud G, Pourcel C. The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinformatics 2007; 8:172; http://dx.doi.org/10.1186/1471-2105-8-172; PMID: 17521438
   PubMed Web of Science ®Google Scholar
• Karginov FV, Hannon GJ. The CRISPR system: small RNA-guided defense in bacteria and archaea. Mol Cell 2010; 37:7 - 19; http://dx.doi.org/10.1016/j.molcel.2009.12.033; PMID: 20129051
   PubMed Web of Science ®Google Scholar
• Bhaya D, Davison M, Barrangou R. CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation. Annu Rev Genet 2011; 45:273 - 97; http://dx.doi.org/10.1146/annurev-genet-110410-132430; PMID: 22060043
   PubMed Web of Science ®Google Scholar
• Westra ER, Swarts DC, Staals RH, Jore MM, Brouns SJ, van der Oost J. The CRISPRs, they are a-changin’: how prokaryotes generate adaptive immunity. Annu Rev Genet 2012; 46:311 - 39; http://dx.doi.org/10.1146/annurev-genet-110711-155447; PMID: 23145983
   PubMed Web of Science ®Google Scholar
• Wiedenheft B, Sternberg SH, Doudna JA. RNA-guided genetic silencing systems in bacteria and archaea. Nature 2012; 482:331 - 8; http://dx.doi.org/10.1038/nature10886; PMID: 22337052
   PubMed Web of Science ®Google Scholar
• Makarova KS, Aravind L, Wolf YI, Koonin EV. Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems. Biol Direct 2011; 6:38; http://dx.doi.org/10.1186/1745-6150-6-38; PMID: 21756346
   PubMed Web of Science ®Google Scholar
• Makarova KS, Haft DH, Barrangou R, Brouns SJ, Charpentier E, Horvath P, et al. Evolution and classification of the CRISPR-Cas systems. Nat Rev Microbiol 2011; 9:467 - 77; http://dx.doi.org/10.1038/nrmicro2577; PMID: 21552286
   PubMed Web of Science ®Google Scholar
• Kecha M, Benallaoua S, Touzel JP, Bonaly R, Duchiron F. Biochemical and phylogenetic characterization of a novel terrestrial hyperthermophilic archaeon pertaining to the genus Pyrococcus from an Algerian hydrothermal hot spring. Extremophiles 2007; 11:65 - 73; http://dx.doi.org/10.1007/s00792-006-0010-9; PMID: 16969710
   PubMed Web of Science ®Google Scholar
• Mardanov AV, Ravin NV, Svetlitchnyi VA, Beletsky AV, Miroshnichenko ML, Bonch-Osmolovskaya EA, et al. Metabolic versatility and indigenous origin of the archaeon Thermococcus sibiricus, isolated from a siberian oil reservoir, as revealed by genome analysis. Appl Environ Microbiol 2009; 75:4580 - 8; http://dx.doi.org/10.1128/AEM.00718-09; PMID: 19447963
   PubMed Web of Science ®Google Scholar
• Miroshnichenko ML, Hippe H, Stackebrandt E, Kostrikina NA, Chernyh NA, Jeanthon C, et al. Isolation and characterization of Thermococcus sibiricus sp. nov. from a Western Siberia high-temperature oil reservoir. Extremophiles 2001; 5:85 - 91; http://dx.doi.org/10.1007/s007920100175; PMID: 11354459
   PubMed Web of Science ®Google Scholar
• Roussel EG, Sauvadet AL, Chaduteau C, Fouquet Y, Charlou JL, Prieur D, et al. Archaeal communities associated with shallow to deep subseafloor sediments of the New Caledonia Basin. Environ Microbiol 2009; 11:2446 - 62; http://dx.doi.org/10.1111/j.1462-2920.2009.01976.x; PMID: 19624712
   PubMed Web of Science ®Google Scholar
• Takai K, Gamo T, Tsunogai U, Nakayama N, Hirayama H, Nealson KH, et al. Geochemical and microbiological evidence for a hydrogen-based, hyperthermophilic subsurface lithoautotrophic microbial ecosystem (HyperSLiME) beneath an active deep-sea hydrothermal field. Extremophiles 2004; 8:269 - 82; http://dx.doi.org/10.1007/s00792-004-0386-3; PMID: 15309563
   PubMed Web of Science ®Google Scholar
• Prieur D, Erauso G, Flament D, Gaillard M, Geslin C, Gonnet M, et al. Deep-sea Thermococcales and their genetic elements: plasmids and viruses. Methods in Microbiology 2006; 35:253 - 78; http://dx.doi.org/10.1016/S0580-9517(08)70014-X
   Web of Science ®Google Scholar
• Cohen GN, Barbe V, Flament D, Galperin M, Heilig R, Lecompte O, et al. An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi. Mol Microbiol 2003; 47:1495 - 512; http://dx.doi.org/10.1046/j.1365-2958.2003.03381.x; PMID: 12622808
   PubMed Web of Science ®Google Scholar
• Kawarabayasi Y, Sawada M, Horikawa H, Haikawa Y, Hino Y, Yamamoto S, et al. Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3. DNA Res 1998; 5:55 - 76; http://dx.doi.org/10.1093/dnares/5.2.55; PMID: 9679194
   PubMedGoogle Scholar
• Robb FT, Maeder DL, Brown JR, DiRuggiero J, Stump MD, Yeh RK, et al. Genomic sequence of hyperthermophile, Pyrococcus furiosus: implications for physiology and enzymology. Methods Enzymol 2001; 330:134 - 57; http://dx.doi.org/10.1016/S0076-6879(01)30372-5; PMID: 11210495
   PubMed Web of Science ®Google Scholar
• Jun X, Lupeng L, Minjuan X, Oger P, Fengping W, Jebbar M, et al. Complete genome sequence of the obligate piezophilic hyperthermophilic archaeon Pyrococcus yayanosii CH1. J Bacteriol 2011; 193:4297 - 8; http://dx.doi.org/10.1128/JB.05345-11; PMID: 21705594
   PubMed Web of Science ®Google Scholar
• Lee HS, Bae SS, Kim MS, Kwon KK, Kang SG, Lee JH. Complete genome sequence of hyperthermophilic Pyrococcus sp. strain NA2, isolated from a deep-sea hydrothermal vent area. J Bacteriol 2011; 193:3666 - 7; http://dx.doi.org/10.1128/JB.05150-11; PMID: 21602357
   PubMed Web of Science ®Google Scholar
• Jung JH, Lee JH, Holden JF, Seo DH, Shin H, Kim HY, et al. Complete genome sequence of the hyperthermophilic archaeon Pyrococcus sp. strain ST04, isolated from a deep-sea hydrothermal sulfide chimney on the Juan de Fuca Ridge. J Bacteriol 2012; 194:4434 - 5; http://dx.doi.org/10.1128/JB.00824-12; PMID: 22843576
   PubMed Web of Science ®Google Scholar
• Vannier P, Marteinsson VT, Fridjonsson OH, Oger P, Jebbar M. Complete genome sequence of the hyperthermophilic, piezophilic, heterotrophic, and carboxydotrophic archaeon Thermococcus barophilus MP. J Bacteriol 2011; 193:1481 - 2; http://dx.doi.org/10.1128/JB.01490-10; PMID: 21217005
   PubMed Web of Science ®Google Scholar
• Zivanovic Y, Armengaud J, Lagorce A, Leplat C, Guérin P, Dutertre M, et al. Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea. Genome Biol 2009; 10:R70; http://dx.doi.org/10.1186/gb-2009-10-6-r70; PMID: 19558674
   PubMed Web of Science ®Google Scholar
• Oger P, Sokolova TG, Kozhevnikova DA, Chernyh NA, Bartlett DH, Bonch-Osmolovskaya EA, et al. Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain AM4, capable of organotrophic growth and growth at the expense of hydrogenogenic or sulfidogenic oxidation of carbon monoxide. J Bacteriol 2011; 193:7019 - 20; http://dx.doi.org/10.1128/JB.06259-11; PMID: 22123768
   PubMed Web of Science ®Google Scholar
• Wang X, Gao Z, Xu X, Ruan L. Complete genome sequence of Thermococcus sp. strain 4557, a hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent area. J Bacteriol 2011; 193:5544 - 5; http://dx.doi.org/10.1128/JB.05851-11; PMID: 21914870
   PubMed Web of Science ®Google Scholar
• Jung JH, Holden JF, Seo DH, Park KH, Shin H, Ryu S, et al. Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain CL1, isolated from a Paralvinella sp. polychaete worm collected from a hydrothermal vent. J Bacteriol 2012; 194:4769 - 70; http://dx.doi.org/10.1128/JB.01016-12; PMID: 22887670
   PubMed Web of Science ®Google Scholar
• Zivanovic Y, Lopez P, Philippe H, Forterre P. Pyrococcus genome comparison evidences chromosome shuffling-driven evolution. Nucleic Acids Res 2002; 30:1902 - 10; http://dx.doi.org/10.1093/nar/30.9.1902; PMID: 11972326
   PubMed Web of Science ®Google Scholar
• Pina M, Bize A, Forterre P, Prangishvili D. The archeoviruses. FEMS Microbiol Rev 2011; 35:1035 - 54; http://dx.doi.org/10.1111/j.1574-6976.2011.00280.x; PMID: 21569059
   PubMed Web of Science ®Google Scholar
• Peng X, Garrett RA, She Q. Archaeal viruses–novel, diverse and enigmatic. Science China. Life Sci 2012; 55:422 - 33; http://dx.doi.org/10.1007/s11427-012-4325-8
   Web of Science ®Google Scholar
• Pietilä MK, Roine E, Paulin L, Kalkkinen N, Bamford DH. An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope. Mol Microbiol 2009; 72:307 - 19; http://dx.doi.org/10.1111/j.1365-2958.2009.06642.x; PMID: 19298373
   PubMed Web of Science ®Google Scholar
• Mochizuki T, Krupovic M, Pehau-Arnaudet G, Sako Y, Forterre P, Prangishvili D. Archaeal virus with exceptional virion architecture and the largest single-stranded DNA genome. Proc Natl Acad Sci USA 2012; 109:13386 - 91; http://dx.doi.org/10.1073/pnas.1203668109; PMID: 22826255
   PubMed Web of Science ®Google Scholar
• Benbouzid-Rollet N, López-García P, Watrin L, Erauso G, Prieur D, Forterre P. Isolation of new plasmids from hyperthermophilic Archaea of the order Thermococcales. Res Microbiol 1997; 148:767 - 75; http://dx.doi.org/10.1016/S0923-2508(97)82452-7; PMID: 9765860
   PubMed Web of Science ®Google Scholar
• Lepage E, Marguet E, Geslin C, Matte-Tailliez O, Zillig W, Forterre P, et al. Molecular diversity of new Thermococcales isolates from a single area of hydrothermal deep-sea vents as revealed by randomly amplified polymorphic DNA fingerprinting and 16S rRNA gene sequence analysis. Appl Environ Microbiol 2004; 70:1277 - 86; http://dx.doi.org/10.1128/AEM.70.3.1277-1286.2004; PMID: 15006744
   PubMed Web of Science ®Google Scholar
• Erauso G, Marsin S, Benbouzid-Rollet N, Baucher MF, Barbeyron T, Zivanovic Y, et al. Sequence of plasmid pGT5 from the archaeon Pyrococcus abyssi: evidence for rolling-circle replication in a hyperthermophile. J Bacteriol 1996; 178:3232 - 7; PMID: 8655503
   PubMed Web of Science ®Google Scholar
• Gonnet M, Erauso G, Prieur D, Le Romancer M. pAMT11, a novel plasmid isolated from a Thermococcus sp. strain closely related to the virus-like integrated element TKV1 of the Thermococcus kodakaraensis genome. Res Microbiol 2011; 162:132 - 43; http://dx.doi.org/10.1016/j.resmic.2010.11.003; PMID: 21144896
   PubMed Web of Science ®Google Scholar
• Ward DE, Revet IM, Nandakumar R, Tuttle JH, de Vos WM, van der Oost J, et al. Characterization of plasmid pRT1 from Pyrococcus sp. strain JT1. J Bacteriol 2002; 184:2561 - 6; http://dx.doi.org/10.1128/JB.184.9.2561-2566.2002; PMID: 11948174
   PubMed Web of Science ®Google Scholar
• Soler N, Justome A, Quevillon-Cheruel S, Lorieux F, Le Cam E, Marguet E, et al. The rolling-circle plasmid pTN1 from the hyperthermophilic archaeon Thermococcus nautilus. Mol Microbiol 2007; 66:357 - 70; http://dx.doi.org/10.1111/j.1365-2958.2007.05912.x; PMID: 17784911
   PubMed Web of Science ®Google Scholar
• Soler N, Marguet E, Cortez D, Desnoues N, Keller J, van Tilbeurgh H, et al. Two novel families of plasmids from hyperthermophilic archaea encoding new families of replication proteins. Nucleic Acids Res 2010; 38:5088 - 104; http://dx.doi.org/10.1093/nar/gkq236; PMID: 20403814
   PubMed Web of Science ®Google Scholar
• Krupovic M, Gonnet M, Hania WB, Forterre P, Erauso G. Insights into dynamics of mobile genetic elements in hyperthermophilic environments from five new thermococcus plasmids. PLoS One 2013; 8:e49044; http://dx.doi.org/10.1371/journal.pone.0049044; PMID: 23326305
   PubMedGoogle Scholar
• Geslin C, Le Romancer M, Erauso G, Gaillard M, Perrot G, Prieur D. PAV1, the first virus-like particle isolated from a hyperthermophilic euryarchaeote, “Pyrococcus abyssi”. J Bacteriol 2003; 185:3888 - 94; http://dx.doi.org/10.1128/JB.185.13.3888-3894.2003; PMID: 12813083
   PubMed Web of Science ®Google Scholar
• Geslin C, Gaillard M, Flament D, Rouault K, Le Romancer M, Prieur D, et al. Analysis of the first genome of a hyperthermophilic marine virus-like particle, PAV1, isolated from Pyrococcus abyssi. J Bacteriol 2007; 189:4510 - 9; http://dx.doi.org/10.1128/JB.01896-06; PMID: 17449623
   PubMed Web of Science ®Google Scholar
• Gorlas A, Koonin EV, Bienvenu N, Prieur D, Geslin C. TPV1, the first virus isolated from the hyperthermophilic genus Thermococcus. Environ Microbiol 2012; 14:503 - 16; http://dx.doi.org/10.1111/j.1462-2920.2011.02662.x; PMID: 22151304
   PubMed Web of Science ®Google Scholar
• Fukui T, Atomi H, Kanai T, Matsumi R, Fujiwara S, Imanaka T. Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes. Genome Res 2005; 15:352 - 63; http://dx.doi.org/10.1101/gr.3003105; PMID: 15710748
   PubMed Web of Science ®Google Scholar
• Clore AJ, Stedman KM. The SSV1 viral integrase is not essential. Virology 2007; 361:103 - 11; http://dx.doi.org/10.1016/j.virol.2006.11.003; PMID: 17175004
   PubMed Web of Science ®Google Scholar
• Benson DA, Karsch-Mizrachi I, Clark K, Lipman DJ, Ostell J, Sayers EW. GenBank. Nucleic Acids Res 2012; 40:Database issue D48 - 53; http://dx.doi.org/10.1093/nar/gkr1202; PMID: 22144687
   PubMed Web of Science ®Google Scholar
• Chan PP, Holmes AD, Smith AM, Tran D, Lowe TM. The UCSC Archaeal Genome Browser: 2012 update. Nucleic Acids Res 2012; 40:Database issue D646 - 52; http://dx.doi.org/10.1093/nar/gkr990; PMID: 22080555
   PubMed Web of Science ®Google Scholar
• Selengut JD, Haft DH, Davidsen T, Ganapathy A, Gwinn-Giglio M, Nelson WC, et al. TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes. Nucleic Acids Res 2007; 35:Database issue D260 - 4; http://dx.doi.org/10.1093/nar/gkl1043; PMID: 17151080
   PubMedGoogle Scholar
• Garrett RA, Shah SA, Vestergaard G, Deng L, Gudbergsdottir S, Kenchappa CS, et al. CRISPR-based immune systems of the Sulfolobales: complexity and diversity. Biochem Soc Trans 2011; 39:51 - 7; http://dx.doi.org/10.1042/BST0390051; PMID: 21265746
   PubMed Web of Science ®Google Scholar
• Garrett RA, Vestergaard G, Shah SA. Archaeal CRISPR-based immune systems: exchangeable functional modules. Trends Microbiol 2011; 19:549 - 56; http://dx.doi.org/10.1016/j.tim.2011.08.002; PMID: 21945420
   PubMed Web of Science ®Google Scholar
• Bernick DL, Cox CL, Dennis PP, Lowe TM. Comparative genomic and transcriptional analyses of CRISPR systems across the genus Pyrobaculum. Front Microbiol 2012; 3:251; http://dx.doi.org/10.3389/fmicb.2012.00251; PMID: 22811677
   PubMed Web of Science ®Google Scholar
• Haft DH, Selengut J, Mongodin EF, Nelson KE. A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput Biol 2005; 1:e60; http://dx.doi.org/10.1371/journal.pcbi.0010060; PMID: 16292354
   PubMed Web of Science ®Google Scholar
• Carte J, Wang R, Li H, Terns RM, Terns MP. Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes. Genes Dev 2008; 22:3489 - 96; http://dx.doi.org/10.1101/gad.1742908; PMID: 19141480
   PubMed Web of Science ®Google Scholar
• Hale CR, Zhao P, Olson S, Duff MO, Graveley BR, Wells L, et al. RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex. Cell 2009; 139:945 - 56; http://dx.doi.org/10.1016/j.cell.2009.07.040; PMID: 19945378
   PubMed Web of Science ®Google Scholar
• Kunin V, Sorek R, Hugenholtz P. Evolutionary conservation of sequence and secondary structures in CRISPR repeats. Genome Biol 2007; 8:R61; http://dx.doi.org/10.1186/gb-2007-8-4-r61; PMID: 17442114
   PubMed Web of Science ®Google Scholar
• Horvath P, Barrangou R. CRISPR/Cas, the immune system of bacteria and archaea. Science 2010; 327:167 - 70; http://dx.doi.org/10.1126/science.1179555; PMID: 20056882
   PubMed Web of Science ®Google Scholar
• Brodt A, Lurie-Weinberger MN, Gophna U. CRISPR loci reveal networks of gene exchange in archaea. Biol Direct 2011; 6:65; http://dx.doi.org/10.1186/1745-6150-6-65; PMID: 22188759
   PubMed Web of Science ®Google Scholar
• Phok K, Moisan A, Rinaldi D, Brucato N, Carpousis AJ, Gaspin C, et al. Identification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeon Pyrococcus abyssi. BMC Genomics 2011; 12:312; http://dx.doi.org/10.1186/1471-2164-12-312; PMID: 21668986
   PubMed Web of Science ®Google Scholar
• Jansen R, Embden JD, Gaastra W, Schouls LM. Identification of genes that are associated with DNA repeats in prokaryotes. Mol Microbiol 2002; 43:1565 - 75; http://dx.doi.org/10.1046/j.1365-2958.2002.02839.x; PMID: 11952905
   PubMed Web of Science ®Google Scholar
• Hale CR, Majumdar S, Elmore J, Pfister N, Compton M, Olson S, et al. Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs. Mol Cell 2012; 45:292 - 302; http://dx.doi.org/10.1016/j.molcel.2011.10.023; PMID: 22227116
   PubMed Web of Science ®Google Scholar
• Pul U, Wurm R, Arslan Z, Geissen R, Hofmann N, Wagner R. Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS. Mol Microbiol 2010; 75:1495 - 512; http://dx.doi.org/10.1111/j.1365-2958.2010.07073.x; PMID: 20132443
   PubMed Web of Science ®Google Scholar
• Hale C, Kleppe K, Terns RM, Terns MP. Prokaryotic silencing (psi)RNAs in Pyrococcus furiosus. RNA 2008; 14:2572 - 9; http://dx.doi.org/10.1261/rna.1246808; PMID: 18971321
   PubMed Web of Science ®Google Scholar
• Brouns SJ, Jore MM, Lundgren M, Westra ER, Slijkhuis RJ, Snijders AP, et al. Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 2008; 321:960 - 4; http://dx.doi.org/10.1126/science.1159689; PMID: 18703739
   PubMed Web of Science ®Google Scholar
• Haurwitz RE, Jinek M, Wiedenheft B, Zhou K, Doudna JA. Sequence- and structure-specific RNA processing by a CRISPR endonuclease. Science 2010; 329:1355 - 8; http://dx.doi.org/10.1126/science.1192272; PMID: 20829488
   PubMed Web of Science ®Google Scholar
• Deltcheva E, Chylinski K, Sharma CM, Gonzales K, Chao Y, Pirzada ZA, et al. CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 2011; 471:602 - 7; http://dx.doi.org/10.1038/nature09886; PMID: 21455174
   PubMed Web of Science ®Google Scholar
• Carte J, Pfister NT, Compton MM, Terns RM, Terns MP. Binding and cleavage of CRISPR RNA by Cas6. RNA 2010; 16:2181 - 8; http://dx.doi.org/10.1261/rna.2230110; PMID: 20884784
   PubMed Web of Science ®Google Scholar
• Wang R, Preamplume G, Terns MP, Terns RM, Li H. Interaction of the Cas6 riboendonuclease with CRISPR RNAs: recognition and cleavage. Structure 2011; 19:257 - 64; http://dx.doi.org/10.1016/j.str.2010.11.014; PMID: 21300293
   PubMed Web of Science ®Google Scholar
• Maris C, Dominguez C, Allain FH. The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression. FEBS J 2005; 272:2118 - 31; http://dx.doi.org/10.1111/j.1742-4658.2005.04653.x; PMID: 15853797
   PubMed Web of Science ®Google Scholar
• Marraffini LA, Sontheimer EJ. CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science 2008; 322:1843 - 5; http://dx.doi.org/10.1126/science.1165771; PMID: 19095942
   PubMed Web of Science ®Google Scholar
• Cocozaki AI, Ramia NF, Shao Y, Hale CR, Terns RM, Terns MP, et al. Structure of the Cmr2 subunit of the CRISPR-Cas RNA silencing complex. Structure 2012; 20:545 - 53; http://dx.doi.org/10.1016/j.str.2012.01.018; PMID: 22405013
   PubMed Web of Science ®Google Scholar
• Zhu X, Ye K. Crystal structure of Cmr2 suggests a nucleotide cyclase-related enzyme in type III CRISPR-Cas systems. FEBS Lett 2012; 586:939 - 45; http://dx.doi.org/10.1016/j.febslet.2012.02.036; PMID: 22449983
   PubMed Web of Science ®Google Scholar
• Garneau JE, Dupuis ME, Villion M, Romero DA, Barrangou R, Boyaval P, et al. The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA. Nature 2010; 468:67 - 71; http://dx.doi.org/10.1038/nature09523; PMID: 21048762
   PubMed Web of Science ®Google Scholar
• Mojica FJ, Díez-Villaseñor C, García-Martínez J, Almendros C. Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology 2009; 155:733 - 40; http://dx.doi.org/10.1099/mic.0.023960-0; PMID: 19246744
   PubMed Web of Science ®Google Scholar
• Shah SA, Garrett RA. CRISPR/Cas and Cmr modules, mobility and evolution of adaptive immune systems. Res Microbiol 2011; 162:27 - 38; http://dx.doi.org/10.1016/j.resmic.2010.09.001; PMID: 20863886
   PubMed Web of Science ®Google Scholar
• Zhang J, Rouillon C, Kerou M, Reeks J, Brugger K, Graham S, et al. Structure and mechanism of the CMR complex for CRISPR-mediated antiviral immunity. Mol Cell 2012; 45:303 - 13; http://dx.doi.org/10.1016/j.molcel.2011.12.013; PMID: 22227115
   PubMed Web of Science ®Google Scholar
• Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, Charpentier E. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 2012; 337:816 - 21; http://dx.doi.org/10.1126/science.1225829; PMID: 22745249
   PubMed Web of Science ®Google Scholar
• Guo P, Cheng Q, Xie P, Fan Y, Jiang W, Qin Z. Characterization of the multiple CRISPR loci on Streptomyces linear plasmid pSHK1. Acta Biochim Biophys Sin (Shanghai) 2011; 43:630 - 9; http://dx.doi.org/10.1093/abbs/gmr052; PMID: 21705768
   PubMed Web of Science ®Google Scholar
• Yang Y, Kurokawa T, Takahama Y, Nindita Y, Mochizuki S, Arakawa K, et al. pSLA2-M of Streptomyces rochei is a composite linear plasmid characterized by self-defense genes and homology with pSLA2-L. Biosci Biotechnol Biochem 2011; 75:1147 - 53; http://dx.doi.org/10.1271/bbb.110054; PMID: 21670526
   PubMed Web of Science ®Google Scholar
• Phung DK, Rinaldi D, Langendijk-Genevaux PS, Quentin Y, Carpousis AJ, Clouet-d’Orval B. Archaeal β-CASP ribonucleases of the aCPSF1 family are orthologs of the eukaryal CPSF-73 factor. Nucleic Acids Res 2013; 41:1091 - 103; http://dx.doi.org/10.1093/nar/gks1237; PMID: 23222134
   PubMed Web of Science ®Google Scholar
• Crooks GE, Hon G, Chandonia JM, Brenner SE. WebLogo: a sequence logo generator. Genome Res 2004; 14:1188 - 90; http://dx.doi.org/10.1101/gr.849004; PMID: 15173120
   PubMed Web of Science ®Google Scholar