Alternative splicing at the right time

References

• Gallego M, Virshup D. Post-translational modifications regulate the ticking of the circadian clock. Nature Rev Mol Cell Biol 2007; 8:139 - 148
   PubMed Web of Science ®Google Scholar
• Mehra A, Baker CL, Loros JJ, Dunlap JC. Post-translational modifications in circadian rhythms. Trends in Biochemical Sciences 2009; 34:483 - 490
   PubMed Web of Science ®Google Scholar
• Staiger D, Koster T. Spotlight on post-transcriptional control in the circadian system. Cell Mol Life Sci 2011; 68:71 - 83
   PubMed Web of Science ®Google Scholar
• Kojima S, Shingle DL, Green CB. Post-transcriptional control of circadian rhythms. J Cell Sci 2011; 124:311 - 320
   PubMed Web of Science ®Google Scholar
• Kim E, Magen A, Ast G. Different levels of alternative splicing among eukaryotes. Nucleic Acids Res 2007; 35:125 - 131
   PubMed Web of Science ®Google Scholar
• Graveley BR. Alternative splicing: increasing diversity in the proteomic world. Trends Genet 2001; 17:100 - 107
   PubMed Web of Science ®Google Scholar
• Filichkin SA, Priest HD, Givan SA, Shen R, Bryant DW, Fox SE, et al. Genome-wide mapping of alternative splicing in Arabidopsis thaliana. Genome Research 2010; 20:45 - 58
   PubMed Web of Science ®Google Scholar
• Campbell MA, Haas BJ, Hamilton JP, Mount SM, Buell CR. Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis. BMC Genomics 2006; 7:327
   PubMed Web of Science ®Google Scholar
• de la Mata M, Lafaille C, Kornblihtt AR. First come, first served revisited: factors affecting the same alternative splicing event have different effects on the relative rates of intron removal. RNA 2010; 16:904 - 912
   PubMed Web of Science ®Google Scholar
• Kornblihtt AR, de la Mata M, Fededa JP, Munoz MJ, Nogues G. Multiple links between transcription and splicing. RNA 2004; 10:1489 - 1498
   PubMed Web of Science ®Google Scholar
• Saltzman AL, Pan Q, Blencowe BJ. Regulation of alternative splicing by the core spliceosomal machinery. Genes Dev 2011; 25:373 - 384
   PubMed Web of Science ®Google Scholar
• Chen M, Manley JL. Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches. Nat Rev Mol Cell Biol 2009; 10:741 - 754
   PubMed Web of Science ®Google Scholar
• Alexander R, Beggs JD. Cross-talk in transcription, splicing and chromatin: who makes the first call?. Biochem Soc Trans 2010; 38:1251 - 1256
   PubMed Web of Science ®Google Scholar
• Narlikar GJ, Fan HY, Kingston RE. Cooperation between complexes that regulate chromatin structure and transcription. Cell 2002; 108:475 - 487
   PubMed Web of Science ®Google Scholar
• Kouzarides T. Chromatin Modifications and Their Function. Cell 2007; 128:693 - 705
   PubMed Web of Science ®Google Scholar
• Berger SL. The complex language of chromatin regulation during transcription. Nature 2007; 447:407 - 412
   PubMed Web of Science ®Google Scholar
• Luco RF, Allo M, Schor IE, Kornblihtt AR, Misteli T. Epigenetics in Alternative Pre-mRNA Splicing. Cell 2011; 144:16 - 26
   PubMed Web of Science ®Google Scholar
• Majercak J, Sidote D, Hardin PE, Edery I. How a Circadian Clock Adapts to Seasonal Decreases in Temperature and Day Length. Neuron 1999; 24:219 - 230
   PubMed Web of Science ®Google Scholar
• Majercak J, Chen W, Edery I. Splicing of the period gene 3′-terminal intron is regulated by light, circadian clock factors and Phospholipase C. Mol Cell Biol 2004; 24:3359 - 3372
   PubMed Web of Science ®Google Scholar
• Collins BH, Rosato E, Kyriacou CP. Seasonal behavior in Drosophila melanogaster requires the photoreceptors, the circadian clock and phospholipase C. Proc Natl Acad Sci USA 2004; 101:1945 - 1950
   PubMed Web of Science ®Google Scholar
• Low KH, Lim C, Ko HW, Edery I. Natural Variation in the Splice Site Strength of a Clock Gene and Species-Specific Thermal Adaptation. Neuron 2008; 60:1054 - 1067
   PubMed Web of Science ®Google Scholar
• Colot HV, Loros JJ, Dunlap JC. Temperature-modulated Alternative Splicing and Promoter Use in the Circadian Clock Gene frequency. Mol Biol Cell 2005; 16:5563 - 5571
   PubMed Web of Science ®Google Scholar
• Alabadí D, Oyama T, Yanovsky MJ, Harmon FG, Mas P, Kay SA. Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock. Science 2001; 293:880 - 883
   PubMed Web of Science ®Google Scholar
• Farré EM, Kay SA. PRR7 protein levels are regulated by light and the circadian clock in Arabidopsis. Plant J 2007; 52:548 - 560
   PubMed Web of Science ®Google Scholar
• Lynch M, Conery JS. The evolutionary fate and consequences of duplicate genes. Science 2000; 290:1151 - 1155
   PubMed Web of Science ®Google Scholar
• Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, et al. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 2006; 313:1596 - 1604
   PubMed Web of Science ®Google Scholar
• Schoning JC, Streitner C, Meyer IM, Gao Y, Staiger D. Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis. Nucl Acids Res 2008; 36:6977 - 6987
   PubMed Web of Science ®Google Scholar
• Schoning JC, Streitner C, Page DR, Hennig S, Uchida K, Wolf E, et al. Auto-regulation of the circadian slave oscillator component AtGRP7 and regulation of its targets is impaired by a single RNA recognition motif point mutation. Plant J 2007; 52:1119 - 1130
   PubMed Web of Science ®Google Scholar
• Hazen S, Naef F, Quisel T, Gendron J, Chen H, Ecker J, et al. Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays. Genome Biol 2009; 10:17
   Web of Science ®Google Scholar
• Sanchez SE, Petrillo E, Beckwith EJ, Zhang X, Rugnone ML, Hernando CE, et al. A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature 2010; 468:112 - 116
   PubMed Web of Science ®Google Scholar
• Bedford MT, Clarke SG. Protein Arginine Methylation in Mammals: Who, What and Why. Molecular Cell 2009; 33:1 - 13
   PubMed Web of Science ®Google Scholar
• Yan D, Zhang Y, Niu L, Yuan Y, Cao X. Identification and characterization of two closely related histone H4 arginine 3 methyltransferases in Arabidopsis thaliana. Biochem J 2007; 408:113 - 121
   PubMed Web of Science ®Google Scholar
• Niu L, Zhang Y, Pei Y, Liu C, Cao X. Redundant Requirement for a Pair of PROTEIN ARGININE METHYLTRANSFERASE4 Homologs for the Proper Regulation of Arabidopsis Flowering Time. Plant Physiol 2008; 148:490 - 503
   PubMed Web of Science ®Google Scholar
• Niu L, Lu F, Pei Y, Liu C, Cao X. Regulation of flowering time by the protein arginine methyltransferase AtPRMT10. EMBO Rep 2007; 8:1190 - 1195
   PubMed Web of Science ®Google Scholar
• Scebba F, Bastiani MD, Bernacchia G, Andreucci A, Galli A, Pitto L. PRMT11: a new Arabidopsis MBD7 protein partner with arginine methyltransferase activity. Plant J 2007; 52:210 - 222
   PubMed Web of Science ®Google Scholar
• Wang X, Zhang Y, Ma Q, Zhang Z, Zue Y, Bao S, et al. SKB1-mediated symmetric dimethylation of his-tone H4R3 controls flowering time in Arabidopsis. EMBO J 2007; 26:1934 - 1941
   PubMed Web of Science ®Google Scholar
• Pei Y, Niu L, Lu F, Liu C, Zhai J, Kong X, et al. Mutations in the type II protein arginine methyltransferase AtPRMT5 result in pleiotropic developmental defects in Arabidopsis. Plant Physiol 2007; 44:1913 - 1923
   Web of Science ®Google Scholar
• Hong S, Song HR, Lutz K, Kerstetter RA, Michael TP, McClung CR. Type II protein arginine methyltransferase 5 (PRMT5) is required for circadian period determination in Arabidopsis thaliana. Proc Natl Acad Sci USA 2010; 107:21211 - 21216
   PubMed Web of Science ®Google Scholar
• Matsushika A, Imamura A, Yamashino T, Mizuno T. Aberrant expression of the light-inducible and circadian-regulated APRR9 gene belonging to the circadian-associated APRR1/TOC1 quintet results in the phenotype of early flowering in Arabidopsis thaliana. Plant Cell Physiol 2002; 43:833 - 843
   PubMed Web of Science ®Google Scholar
• Zhang Z, Zhang S, Zhang Y, Wang X, Li D, Li Q, et al. Arabidopsis Floral Initiator SKB1 Confers High Salt Tolerance by Regulating Transcription and Pre-mRNA Splicing through Altering Histone H4R3 and Small Nuclear Ribonucleoprotein LSM4 Methylation. Plant Cell 2011; 23:396 - 411
   PubMed Web of Science ®Google Scholar
• Deng X, Gu L, Liu C, Lu T, Lu F, Lu Z, et al. Arginine methylation mediated by the Arabidopsis homolog of PRMT5 is essential for proper premRNA splicing. Proc Natl Acad Sci USA 2010; 107:19114 - 19119
   PubMed Web of Science ®Google Scholar
• Dacwag CS, Ohkawa Y, Pal S, Sif S, Imbalzano AN. The Protein Arginine Methyltransferase Prmt5 Is Required for Myogenesis because It Facilitates ATP-Dependent Chromatin Remodeling. Mol Cell Biol 2007; 27:384 - 394
   PubMed Web of Science ®Google Scholar
• Schmitz R, Sung S, Amasino R. Histone arginine methylation is required for vernalization-induced epigenetic silencing of FLC in winter-annual Arabidopsis thaliana. Proc Natl Acad Sci USA 2008; 105:411 - 416
   PubMed Web of Science ®Google Scholar
• Chari A, Fischer U. Cellular strategies for the assembly of molecular machines. Trends Biochem Sci 2010; 35:676 - 683
   PubMed Web of Science ®Google Scholar
• Boon KL, Grainger RJ, Ehsani P, Barrass JD, Auchynnikava T, Inglehearn CF, et al. prp8 mutations that cause human retinitis pigmentosa lead to a U5 snRNP maturation defect in yeast. Nat Struct Mol Biol 2007; 14:1077 - 1083
   PubMed Web of Science ®Google Scholar
• Zhang D, Rosbash M. Identification of eight proteins that cross-link to pre-mRNA in the yeast commitment complex. Genes Dev 1999; 13:581 - 592
   PubMed Web of Science ®Google Scholar
• Ptitsyn A, Gimble J. Analysis of circadian pattern reveals tissue-specific alternative transcription in leptin signaling pathway. BMC Bioinformatics 2007; 8:15
   PubMedGoogle Scholar
• Janssen T, Husson SJ, Lindemans M, Mertens I, Rademakers S, Donck KV, et al. Functional Characterization of Three G Protein-coupled Receptors for Pigment Dispersing Factors in Caenorhabditis elegans. J Biolog Chem 2008; 283:15241 - 15249
   PubMed Web of Science ®Google Scholar
• Staiger D, Zecca L, Kirk DAW, Apel K, Eckstein L. The circadian clock regulated RNA-binding protein AtGRP7 autoregulates its expression by influencing alternative splicing of its own pre-mRNA. Plant J 2003; 33:361 - 371
   PubMed Web of Science ®Google Scholar
• Zhang N, Kallis RP, Ewy RG, Portis AR. Light modulation of Rubisco in Arabidopsis requires a capacity for redox regulation of the larger Rubisco activase isoform. Proc Natl Acad Sci USA 2002; 99:3330 - 3334
   PubMed Web of Science ®Google Scholar