RNA Biology, Volume 8, Issue 6 (2011)

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RNA Biology, Volume 8, Issue 6 (2011)

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Landes Highlights

Announcement
Landes Highlights
Eva M. Riedmann
Pages: 935-937
Published online: 01 Nov 2011
AbstractforLandes Highlights | PDF (588.6 KB)
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RNA Families

Article
Animal snoRNAs and scaRNAs with exceptional structures
Manja Marz, Andreas R. Gruber, Christian Höner zu Siederdissen, Fabian Amman, Stefan Badelt, Sebastian Bartschat, Stephan H. Bernhart, Wolfgang Beyer, Stephanie Kehr, Ronny Lorenz, Andrea Tanzer, Dilmurat Yusuf, Hakim Tafer, Ivo L. Hofacker & Peter F. Stadler
Pages: 938-946
Published online: 01 Nov 2011
AbstractforAnimal snoRNAs and scaRNAs with exceptional structures | Full Text | References | PDF (895.3 KB) | Supplemental
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Article
sRNA-Xcc1, an integron-encoded transposon- and plasmid-transferred trans-acting sRNA, is under the positive control of the key virulence regulators HrpG and HrpX of Xanthomonas campestris pathovar campestris
Xiao-Lin Chen, Dong-Jie Tang, Rui-Ping Jiang, Yong-Qiang He, Bo-Le Jiang, Guang-Tao Lu & Ji-Liang Tang
Pages: 947-953
Published online: 01 Nov 2011
AbstractforsRNA-Xcc1, an integron-encoded transposon- and plasmid-transferred trans-acting sRNA, is under the positive control of the key virulence regulators HrpG and HrpX of Xanthomonas campestris pathovar campestris | Full Text | References | PDF (5.3 MB) | Supplemental
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Point of View

Alternative splicing at the right time
Sabrina E. Sanchez, Ezequiel Petrillo, Alberto R. Kornblihtt & Marcelo J. Yanovsky
Pages: 954-959
Published online: 01 Nov 2011
AbstractforAlternative splicing at the right time | Full Text | References | PDF (791.6 KB)
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Posttranscriptional regulation of miRNAs in the DNA damage response
Xinna Zhang & Xiongbin Lu
Pages: 960-963
Published online: 01 Nov 2011
AbstractforPosttranscriptional regulation of miRNAs in the DNA damage response | Full Text | References | PDF (293.3 KB)
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Transcriptional activators enhance polyadenylation of mRNA precursors
Takashi Nagaike & James L. Manley
Pages: 964-967
Published online: 01 Nov 2011
AbstractforTranscriptional activators enhance polyadenylation of mRNA precursors | Full Text | References | PDF (361.3 KB)
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RNA splicing control
Yet another gene regulatory role for long nuclear noncoding RNAs
Xinying Zong, Vidisha Tripathi & Kannanganattu V. Prasanth
Pages: 968-977
Published online: 01 Nov 2011
AbstractforRNA splicing control | Full Text | References | PDF (823.1 KB)
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Point-of-View

Designer RNA-binding proteins: New tools for manipulating the transcriptome
Aleksandra Filipovska & Oliver Rackham
Pages: 978-983
Published online: 01 Nov 2011
AbstractforDesigner RNA-binding proteins: New tools for manipulating the transcriptome | PDF (1.1 MB)
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Meeting Report

Meeting Report
RNA meets disease in paradise
Julia Winter, Anna Roth & Sven Diederichs
Pages: 984-987
Published online: 01 Nov 2011
AbstractforRNA meets disease in paradise | PDF (308.7 KB)
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Technical Paper

Article
Highly accurate and high-resolution function prediction of RNA binding proteins by fold recognition and binding affinity prediction
Huiying Zhao, Yuedong Yang & Yaoqi Zhou
Pages: 988-996
Published online: 01 Nov 2011
AbstractforHighly accurate and high-resolution function prediction of RNA binding proteins by fold recognition and binding affinity prediction | Full Text | References | PDF (963.8 KB)
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Research Paper

Article
A natural fast-cleaving branching ribozyme from the amoeboflagellate Naegleria pringsheimi
Yunjia Tang, Henrik Nielsen, Åsa Birna Birgisdottir & Steinar Johansen
Pages: 997-1004
Published online: 01 Nov 2011
AbstractforA natural fast-cleaving branching ribozyme from the amoeboflagellate Naegleria pringsheimi | PDF (1.6 MB) | Supplemental
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Article
Micro RNA -214,-150,-146a and-125b target Huntingtin gene
Mithun Sinha, Jayeeta Ghose & Nitai P. Bhattarcharyya
Pages: 1005-1021
Published online: 01 Nov 2011
AbstractforMicro RNA -214,-150,-146a and-125b target Huntingtin gene | PDF (1.8 MB) | Supplemental
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Article
Upregulation of RNase E activity by mutation of a site that uncompetitively interferes with RNA binding
Hayoung Go, Christopher J. Moore, Minho Lee, Eunkyoung Shin, Che Ok Jeon, Chang-Jun Cha, Seung Hyun Han, Su-Jin Kim, Sang-Won Lee, Younghoon Lee, Nam-Chul Ha, Yong-Hak Kim, Stanley N. Cohen & Kangseok Lee
Pages: 1022-1034
Published online: 01 Nov 2011
AbstractforUpregulation of RNase E activity by mutation of a site that uncompetitively interferes with RNA binding | PDF (3.8 MB) | Supplemental
  • 399 Views
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Article
Transcriptional gene silencing of HIV-1 through promoter targeted RNA is highly specific
Kazuo Suzuki, Takaomi Ishida, Makoto Yamagishi, Chantelle Ahlenstiel, Sanjay Swaminathan, Katharine Marks, Daniel Murray, Erin M McCartney, Michael R Beard, Marina Alexander, Damian F.J. Purcell, David A Cooper, Toshiki Watanabe & Anthony D Kelleher
Pages: 1035-1046
Published online: 01 Nov 2011
AbstractforTranscriptional gene silencing of HIV-1 through promoter targeted RNA is highly specific | Full Text | References | PDF (3.6 MB) | Supplemental
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Article
Multiple RNA binding domains of Bruno confer recognition of diverse binding sites for translational repression
Brad Reveal, Carlos Garcia, Andrew Ellington & Paul Macdonald
Pages: 1047-1060
Published online: 01 Nov 2011
AbstractforMultiple RNA binding domains of Bruno confer recognition of diverse binding sites for translational repression | Full Text | References | PDF (5.1 MB)
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Article
Differential effects of PKA-controlled CaMKK2 variants on neuronal differentiation
Wenguang Cao, Muhammad Sohail, Guodong Liu, Geremy A. Koumbadinga, Vincent G. Lobo & Jiuyong Xie
Pages: 1061-1072
Published online: 01 Nov 2011
AbstractforDifferential effects of PKA-controlled CaMKK2 variants on neuronal differentiation | Full Text | References | PDF (4.1 MB)
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Article
Distinct activities of several RNase J proteins in methanogenic archaea
Shiri Levy, Victoria Portnoy, Jasmine Admon & Gadi Schuster
Pages: 1073-1083
Published online: 01 Nov 2011
AbstractforDistinct activities of several RNase J proteins in methanogenic archaea | PDF (1.3 MB) | Supplemental
  • 494 Views
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Article
7SK snRNA-mediated, gene-specific cooperativity of HMGA1 and P-TEFb
Sebastian Eilebrecht, Bernd-Joachim Benecke & Arndt Benecke
Pages: 1084-1093
Published online: 01 Nov 2011
Abstractfor7SK snRNA-mediated, gene-specific cooperativity of HMGA1 and P-TEFb | PDF (2.2 MB)
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Article
Abundant class of non-coding RNA regulates development in the social amoeba Dictyostelium discoideum
Lotta Avesson, Heiko T Schumacher, Pierre Fechter, Pascale Romby, Ulf Hellman & Fredrik Söderbom
Pages: 1094-1104
Published online: 01 Nov 2011
AbstractforAbundant class of non-coding RNA regulates development in the social amoeba Dictyostelium discoideum | PDF (1.2 MB) | Supplemental
  • 508 Views
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Article
Role of pri-miRNA tertiary structure in miR-17~92 miRNA biogenesis
Steven G Chaulk, Gina L. Thede, Oliver A. Kent, Zhizhong Xu, Emily Gesner, Richard A. Veldhoen, Suneil K. Khanna, Ing Swie Goping, Andrew M. MacMillan, Joshua T. Mendell, Howard Young, Richard P. Fahlman & J.N. Mark Glover
Pages: 1105-1114
Published online: 01 Nov 2011
AbstractforRole of pri-miRNA tertiary structure in miR-17~92 miRNA biogenesis | PDF (5.3 MB) | Supplemental
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Article
Loop nucleotides control primary and mature miRNA function in target recognition and repression
Si-Biao Yue, Robin Deis Trujillo, Yujie Tang, William E. O’Gorman & Chang-Zheng Chen
Pages: 1115-1123
Published online: 01 Nov 2011
AbstractforLoop nucleotides control primary and mature miRNA function in target recognition and repression | Full Text | References | PDF (5.2 MB) | Supplemental
  • 863 Views
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Article
Construction of MicroRNA- and MicroRNA*-mediated regulatory networks in plants
Yijun Meng, Chaogang Shao, Lingfeng Gou, Yongfeng Jin & Ming Chen
Pages: 1124-1148
Published online: 01 Nov 2011
AbstractforConstruction of MicroRNA- and MicroRNA*-mediated regulatory networks in plants | PDF (8.4 MB) | Supplemental
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Article
Argonaute proteins regulate microRNA stability: Increased microRNA abundance by Argonaute proteins is due to microRNA stabilization
Julia Winter & Sven Diederichs
Pages: 1149-1157
Published online: 01 Nov 2011
AbstractforArgonaute proteins regulate microRNA stability: Increased microRNA abundance by Argonaute proteins is due to microRNA stabilization | PDF (1.3 MB) | Supplemental
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Article
The nucleolar protein Nop19p interacts preferentially with Utp25p and Dhr2p and is essential for the production of the 40S ribosomal subunit in Saccharomyces cerevisiae
Elodie Choque, Marlène Marcellin, Odile Burlet-Schiltz, Olivier Gadal & Christophe Dez
Pages: 1158-1172
Published online: 01 Nov 2011
AbstractforThe nucleolar protein Nop19p interacts preferentially with Utp25p and Dhr2p and is essential for the production of the 40S ribosomal subunit in Saccharomyces cerevisiae | Full Text | References | PDF (2.1 MB) | Supplemental
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Article
Quantitative mass spectrometry of DENV-2 RNA-interacting proteins reveals that the DEAD-box RNA helicase DDX6 binds the DB1 and DB2 3’ UTR structures
Alex Michael Ward, Katell Bidet, Ang Yinglin, Siok Ghee Ler, Kelly Hogue, Walter Blackstock, Jayantha Gunaratne & Mariano A. Garcia-Blanco
Pages: 1173-1186
Published online: 01 Nov 2011
AbstractforQuantitative mass spectrometry of DENV-2 RNA-interacting proteins reveals that the DEAD-box RNA helicase DDX6 binds the DB1 and DB2 3’ UTR structures | Full Text | References | PDF (2.1 MB) | Supplemental
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