Keeping up to speed with the transcription termination factor Rho motor

References

• Rabhi M, Rahmouni AR, Boudvillain M. Jankowsky E. Transcription termination factor Rho: a ring-shaped RNA helicase from bacteria. RNA helicases 2010; Cambridge (UK) RSC Publishing 243 - 271
   Google Scholar
• Mohanty BK, Kushner SR. The majority of Escherichia coli mRNAs undergo post-transcriptional modification in exponentially growing cells. Nucleic Acids Res 2006; 34:5695 - 5704
   PubMed Web of Science ®Google Scholar
• Cardinale CJ, Washburn RS, Tadigotla VR, Brown LM, Gottesman ME, Nudler E. Termination factor Rho and its cofactors NusA and NusG silence foreign DNA in E. coli. Science 2008; 320:935 - 938
   PubMed Web of Science ®Google Scholar
• Peters JM, Mooney RA, Kuan PF, Rowland JL, Keles S, Landick R. Rho directs widespread termination of intragenic and stable RNA transcription. Proc Natl Acad Sci USA 2009; 106:15406 - 15411
   PubMed Web of Science ®Google Scholar
• Gowrishankar J, Harinarayanan R. Why is transcription coupled to translation in bacteria?. Mol Microbiol 2004; 54:598 - 603
   Google Scholar
• Thomsen ND, Berger JM. Running in reverse: the structural basis for translocation polarity in hexameric helicases. Cell 2009; 139:523 - 534
   PubMed Web of Science ®Google Scholar
• Chalissery J, Banerjee S, Bandey I, Sen R. Transcription termination defective mutants of Rho: Role of different functions of Rho in releasing RNA from the elongation complex. J Mol Biol 2007; 371:855 - 872
   PubMed Web of Science ®Google Scholar
• Steinmetz EJ, Platt T. Evidence supporting a tethered tracking model for helicase activity of Escherichia coli Rho factor. Proc Natl Acad Sci USA 1994; 91:1401 - 1405
   PubMed Web of Science ®Google Scholar
• Geiselmann J, Wang Y, Seifried SE, von Hippel PH. A physical model for the translocation and helicase activities of Escherichia coli transcription termination protein Rho. Proc Natl Acad Sci USA 1993; 90:7754 - 7758
   PubMed Web of Science ®Google Scholar
• Skordalakes E, Berger JM. Structure of the rho transcription terminator. Mechanism of mRNA recognition and helicase loading. Cell 2003; 114:135 - 146
   PubMed Web of Science ®Google Scholar
• Kim DE, Patel SS. The kinetic pathway of RNA binding to the Escherichia coli transcription termination factor Rho. J Biol Chem 2001; 276:13902 - 13910
   PubMed Web of Science ®Google Scholar
• Skordalakes E, Berger JM. Structural insights into RNA-dependent ring closure and ATPase activation by the Rho termination factor. Cell 2006; 127:553 - 564
   PubMed Web of Science ®Google Scholar
• Schwartz A, Rabhi M, Jacquinot F, Margeat E, Rahmouni AR, Boudvillain M. A stepwise 2′-hydroxyl activation mechanism for the ring-shaped transcription termination Rho helicase. Nat Struct Mol Biol 2009; 16:1309 - 1316
   PubMed Web of Science ®Google Scholar
• Moffitt JR, Chemla YR, Aathavan K, Grimes S, Jardine PJ, Anderson DL, et al. Intersubunit coordination in a homomeric ring ATPase. Nature 2009; 457:446 - 450
   PubMed Web of Science ®Google Scholar
• Patel SS. Structural biology: Steps in the right direction. Nature 2009; 462:581 - 583
   PubMed Web of Science ®Google Scholar
• Walmacq C, Rahmouni AR, Boudvillain M. Influence of substrate composition on the helicase activity of transcription termination factor Rho: reduced processivity of Rho hexamers during unwinding of RNA-DNA hybrid regions. J Mol Biol 2004; 342:403 - 420
   PubMed Web of Science ®Google Scholar
• Walmacq C, Rahmouni AR, Boudvillain M. Testing the steric exclusion model for hexameric helicases: substrate features that alter RNA-DNA unwinding by the transcription termination factor Rho. Biochemistry 2006; 45:5885 - 5895
   PubMed Web of Science ®Google Scholar
• Schwartz A, Margeat E, Rahmouni AR, Boudvillain M. Transcription termination factor Rho can displace streptavidin from biotinylated RNA. J Biol Chem 2007; 282:31469 - 31476
   PubMed Web of Science ®Google Scholar
• Dutta D, Chalissery J, Sen R. Transcription termination factor Rho prefers catalytically active Elongation complexes for releasing RNA. J Biol Chem 2008; 283:20243 - 20251
   PubMed Web of Science ®Google Scholar
• Park JS, Roberts JW. Role of DNA bubble rewinding in enzymatic transcription termination. Proc Natl Acad Sci USA 2006; 103:4870 - 4875
   PubMed Web of Science ®Google Scholar
• Epshtein V, Dutta D, Wade J, Nudler E. An allosteric mechanism of Rho-dependent transcription termination. Nature 2010; 463:245 - 249
   PubMed Web of Science ®Google Scholar
• Santangelo TJ, Roberts JW. Forward translocation is the natural pathway of RNA release at an intrinsic terminator. Mol Cell 2004; 14:117 - 126
   PubMed Web of Science ®Google Scholar
• Epshtein V, Cardinale CJ, Ruckenstein AE, Borukhov S, Nudler E. An allosteric path to transcription termination. Mol Cell 2007; 28:991 - 1001
   PubMed Web of Science ®Google Scholar
• Larson MH, Greenleaf WJ, Landick R, Block SM. Applied force reveals mechanistic and energetic details of transcription termination. Cell 2008; 132:971 - 982
   Google Scholar
• Mooney RA, Davis SE, Peters JM, Rowland JL, Ansari AZ, Landick R. Regulator trafficking on bacterial transcription units in vivo. Mol Cell 2009; 33:97 - 108
   PubMed Web of Science ®Google Scholar
• de Smit MH, Verlaan PW, van Duin J, Pleij CW. In vivo dynamics of intracistronic transcriptional polarity. J Mol Biol 2009; 385:733 - 747
   PubMed Web of Science ®Google Scholar
• Jacquier A. The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs. Nat Rev Genet 2009; 10:833 - 844
   PubMed Web of Science ®Google Scholar
• Kalarickal NC, Ranjan A, Kalyani BS, Wal M, Sen R. A bacterial transcription terminator with inefficient molecular motor action but with a robust transcription termination function. J Mol Biol 2010; 395:966 - 982
   PubMed Web of Science ®Google Scholar
• Enemark EJ, Joshua-Tor L. Mechanism of DNA translocation in a replicative hexameric helicase. Nature 2006; 442:270 - 275
   PubMed Web of Science ®Google Scholar