Genomic occupancy of the transcriptional co-activators p300 and CBP

References

• Chrivia JC, Kwok RP, Lamb N, Hagiwara M, Montminy MR, Goodman RH. Phosphorylated CREB binds specifically to the nuclear protein CBP. Nature 1993; 365:855 - 9; http://dx.doi.org/10.1038/365855a0; PMID: 8413673
   PubMed Web of Science ®Google Scholar
• Eckner R, Ewen ME, Newsome D, Gerdes M, DeCaprio JA, Lawrence JB, et al. Molecular cloning and functional analysis of the adenovirus E1A-associated 300-kD protein (p300) reveals a protein with properties of a transcriptional adaptor. Genes Dev 1994; 8:869 - 84; http://dx.doi.org/10.1101/gad.8.8.869; PMID: 7523245
   PubMed Web of Science ®Google Scholar
• Whyte P, Williamson NM, Harlow E. Cellular targets for transformation by the adenovirus E1A proteins. Cell 1989; 56:67 - 75; http://dx.doi.org/10.1016/0092-8674(89)90984-7; PMID: 2521301
   PubMed Web of Science ®Google Scholar
• Bedford DC, Kasper LH, Fukuyama T, Brindle PK. Target gene context influences the transcriptional requirement for the KAT3 family of CBP and p300 histone acetyltransferases. Epigenetics 2010; 5:9 - 15; http://dx.doi.org/10.4161/epi.5.1.10449; PMID: 20110770
   PubMed Web of Science ®Google Scholar
• Wang L, Tang Y, Cole PA, Marmorstein R. Structure and chemistry of the p300/CBP and Rtt109 histone acetyltransferases: implications for histone acetyltransferase evolution and function. Curr Opin Struct Biol 2008; 18:741 - 7; http://dx.doi.org/10.1016/j.sbi.2008.09.004; PMID: 18845255
   PubMed Web of Science ®Google Scholar
• Jin Q, Yu LR, Wang L, Zhang Z, Kasper LH, Lee JE, et al. Distinct roles of GCN5/PCAF-mediated H3K9ac and CBP/p300-mediated H3K18/27ac in nuclear receptor transactivation. EMBO J 2011; 30:249 - 62; http://dx.doi.org/10.1038/emboj.2010.318; PMID: 21131905
   PubMed Web of Science ®Google Scholar
• Tie F, Banerjee R, Stratton CA, Prasad-Sinha J, Stepanik V, Zlobin A, et al. CBP-mediated acetylation of histone H3 lysine 27 antagonizes Drosophila Polycomb silencing. Development 2009; 136:3131 - 41; http://dx.doi.org/10.1242/dev.037127; PMID: 19700617
   PubMed Web of Science ®Google Scholar
• Das C, Lucia MS, Hansen KC, Tyler JK. CBP/p300-mediated acetylation of histone H3 on lysine 56. Nature 2009; 459:113 - 7; http://dx.doi.org/10.1038/nature07861; PMID: 19270680
   PubMed Web of Science ®Google Scholar
• Zeng L, Zhang Q, Gerona-Navarro G, Moshkina N, Zhou MM. Structural basis of site-specific histone recognition by the bromodomains of human coactivators PCAF and CBP/p300. Structure 2008; 16:643 - 52; http://dx.doi.org/10.1016/j.str.2008.01.010; PMID: 18400184
   PubMed Web of Science ®Google Scholar
• Goodman RH, Smolik S. CBP/p300 in cell growth, transformation, and development. Genes Dev 2000; 14:1553 - 77; PMID: 10887150
   PubMed Web of Science ®Google Scholar
• Horwitz GA, Zhang K, McBrian MA, Grunstein M, Kurdistani SK, Berk AJ. Adenovirus small e1a alters global patterns of histone modification. Science 2008; 321:1084 - 5; http://dx.doi.org/10.1126/science.1155544; PMID: 18719283
   PubMed Web of Science ®Google Scholar
• Ferrari R, Su T, Li B, Bonora G, Oberai A, Chan Y, et al. Reorganization of the host epigenome by a viral oncogene. Genome Res 2012; 22:1212 - 21; http://dx.doi.org/10.1101/gr.132308.111; PMID: 22499665
   PubMed Web of Science ®Google Scholar
• Roelfsema JH, Peters DJ. Rubinstein-Taybi syndrome: clinical and molecular overview. Expert Rev Mol Med 2007; 9:1 - 16; http://dx.doi.org/10.1017/S1462399407000415; PMID: 17942008
   PubMedGoogle Scholar
• Iyer NG, Ozdag H, Caldas C. p300/CBP and cancer. Oncogene 2004; 23:4225 - 31; http://dx.doi.org/10.1038/sj.onc.1207118; PMID: 15156177
   PubMed Web of Science ®Google Scholar
• Mullighan CG, Zhang J, Kasper LH, Lerach S, Payne-Turner D, Phillips LA, et al. CREBBP mutations in relapsed acute lymphoblastic leukaemia. Nature 2011; 471:235 - 9; http://dx.doi.org/10.1038/nature09727; PMID: 21390130
   PubMed Web of Science ®Google Scholar
• Pasqualucci L, Dominguez-Sola D, Chiarenza A, Fabbri G, Grunn A, Trifonov V, et al. Inactivating mutations of acetyltransferase genes in B-cell lymphoma. Nature 2011; 471:189 - 95; http://dx.doi.org/10.1038/nature09730; PMID: 21390126
   PubMed Web of Science ®Google Scholar
• Wang Z, Zang C, Cui K, Schones DE, Barski A, Peng W, et al. Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes. Cell 2009; 138:1019 - 31; http://dx.doi.org/10.1016/j.cell.2009.06.049; PMID: 19698979
   PubMed Web of Science ®Google Scholar
• Ramos YF, Hestand MS, Verlaan M, Krabbendam E, Ariyurek Y, van Galen M, et al. Genome-wide assessment of differential roles for p300 and CBP in transcription regulation. Nucleic Acids Res 2010; 38:5396 - 408; http://dx.doi.org/10.1093/nar/gkq184; PMID: 20435671
   PubMed Web of Science ®Google Scholar
• Heintzman ND, Stuart RK, Hon G, Fu Y, Ching CW, Hawkins RD, et al. Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat Genet 2007; 39:311 - 8; http://dx.doi.org/10.1038/ng1966; PMID: 17277777
   PubMed Web of Science ®Google Scholar
• Nègre N, Brown CD, Ma L, Bristow CA, Miller SW, Wagner U, et al. A cis-regulatory map of the Drosophila genome. Nature 2011; 471:527 - 31; http://dx.doi.org/10.1038/nature09990; PMID: 21430782
   PubMed Web of Science ®Google Scholar
• Visel A, Blow MJ, Li Z, Zhang T, Akiyama JA, Holt A, et al. ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 2009; 457:854 - 8; http://dx.doi.org/10.1038/nature07730; PMID: 19212405
   PubMed Web of Science ®Google Scholar
• Ong CT, Corces VG. Enhancer function: new insights into the regulation of tissue-specific gene expression. Nat Rev Genet 2011; 12:283 - 93; http://dx.doi.org/10.1038/nrg2957; PMID: 21358745
   PubMed Web of Science ®Google Scholar
• Holmqvist PH, Boija A, Philip P, Crona F, Stenberg P, Mannervik M. Preferential genome targeting of the CBP co-activator by Rel and Smad proteins in early Drosophila melanogaster embryos. PLoS Genet 2012; 8:e1002769; http://dx.doi.org/10.1371/journal.pgen.1002769; PMID: 22737084
   PubMedGoogle Scholar
• Krebs AR, Karmodiya K, Lindahl-Allen M, Struhl K, Tora L. SAGA and ATAC histone acetyl transferase complexes regulate distinct sets of genes and ATAC defines a class of p300-independent enhancers. Mol Cell 2011; 44:410 - 23; http://dx.doi.org/10.1016/j.molcel.2011.08.037; PMID: 22055187
   PubMed Web of Science ®Google Scholar
• Yao TP, Oh SP, Fuchs M, Zhou ND, Ch’ng LE, Newsome D, et al. Gene dosage-dependent embryonic development and proliferation defects in mice lacking the transcriptional integrator p300. Cell 1998; 93:361 - 72; http://dx.doi.org/10.1016/S0092-8674(00)81165-4; PMID: 9590171
   PubMed Web of Science ®Google Scholar
• Hong JW, Hendrix DA, Papatsenko D, Levine MS. How the Dorsal gradient works: insights from postgenome technologies. Proc Natl Acad Sci U S A 2008; 105:20072 - 6; http://dx.doi.org/10.1073/pnas.0806476105; PMID: 19104040
   PubMed Web of Science ®Google Scholar
• Affolter M, Marty T, Vigano MA, Jaźwińska A. Nuclear interpretation of Dpp signaling in Drosophila. EMBO J 2001; 20:3298 - 305; http://dx.doi.org/10.1093/emboj/20.13.3298; PMID: 11432817
   PubMed Web of Science ®Google Scholar
• Akimaru H, Hou DX, Ishii S. Drosophila CBP is required for dorsal-dependent twist gene expression. Nat Genet 1997; 17:211 - 4; http://dx.doi.org/10.1038/ng1097-211; PMID: 9326945
   PubMed Web of Science ®Google Scholar
• Fu D, Ma J. Interplay between positive and negative activities that influence the role of Bicoid in transcription. Nucleic Acids Res 2005; 33:3985 - 93; http://dx.doi.org/10.1093/nar/gki691; PMID: 16030350
   PubMed Web of Science ®Google Scholar
• Fu D, Wen Y, Ma J. The co-activator CREB-binding protein participates in enhancer-dependent activities of bicoid. J Biol Chem 2004; 279:48725 - 33; http://dx.doi.org/10.1074/jbc.M407066200; PMID: 15358774
   PubMed Web of Science ®Google Scholar
• Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, et al, modENCODE Consortium. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science 2010; 330:1787 - 97; http://dx.doi.org/10.1126/science.1198374; PMID: 21177974
   PubMed Web of Science ®Google Scholar
• Kvon EZ, Stampfel G, Yáñez-Cuna JO, Dickson BJ, Stark A. HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signature. Genes Dev 2012; 26:908 - 13; http://dx.doi.org/10.1101/gad.188052.112; PMID: 22499593
   PubMed Web of Science ®Google Scholar
• Byun JS, Wong MM, Cui W, Idelman G, Li Q, De Siervi A, et al. Dynamic bookmarking of primary response genes by p300 and RNA polymerase II complexes. Proc Natl Acad Sci U S A 2009; 106:19286 - 91; http://dx.doi.org/10.1073/pnas.0905469106; PMID: 19880750
   PubMed Web of Science ®Google Scholar
• Ceschin DG, Walia M, Wenk SS, Duboé C, Gaudon C, Xiao Y, et al. Methylation specifies distinct estrogen-induced binding site repertoires of CBP to chromatin. Genes Dev 2011; 25:1132 - 46; http://dx.doi.org/10.1101/gad.619211; PMID: 21632823
   PubMed Web of Science ®Google Scholar
• Rikitake Y, Moran E. DNA-binding properties of the E1A-associated 300-kilodalton protein. Mol Cell Biol 1992; 12:2826 - 36; PMID: 1534143
   PubMed Web of Science ®Google Scholar
• Creyghton MP, Cheng AW, Welstead GG, Kooistra T, Carey BW, Steine EJ, et al. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc Natl Acad Sci U S A 2010; 107:21931 - 6; http://dx.doi.org/10.1073/pnas.1016071107; PMID: 21106759
   PubMed Web of Science ®Google Scholar
• Rada-Iglesias A, Bajpai R, Swigut T, Brugmann SA, Flynn RA, Wysocka J. A unique chromatin signature uncovers early developmental enhancers in humans. Nature 2011; 470:279 - 83; http://dx.doi.org/10.1038/nature09692; PMID: 21160473
   PubMed Web of Science ®Google Scholar
• Zentner GE, Tesar PJ, Scacheri PC. Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions. Genome Res 2011; 21:1273 - 83; http://dx.doi.org/10.1101/gr.122382.111; PMID: 21632746
   PubMed Web of Science ®Google Scholar
• Bell O, Schwaiger M, Oakeley EJ, Lienert F, Beisel C, Stadler MB, et al. Accessibility of the Drosophila genome discriminates PcG repression, H4K16 acetylation and replication timing. Nat Struct Mol Biol 2010; 17:894 - 900; http://dx.doi.org/10.1038/nsmb.1825; PMID: 20562853
   PubMed Web of Science ®Google Scholar
• Simon JA, Kingston RE. Mechanisms of polycomb gene silencing: knowns and unknowns. Nat Rev Mol Cell Biol 2009; 10:697 - 708; PMID: 19738629
   PubMed Web of Science ®Google Scholar
• Kim WJ, Rivera MN, Coffman EJ, Haber DA. The WTX tumor suppressor enhances p53 acetylation by CBP/p300. Mol Cell 2012; 45:587 - 97; http://dx.doi.org/10.1016/j.molcel.2011.12.025; PMID: 22285752
   PubMed Web of Science ®Google Scholar
• Chen J, Li Q. Life and death of transcriptional co-activator p300. Epigenetics 2011; 6:957 - 61; http://dx.doi.org/10.4161/epi.6.8.16065; PMID: 21730760
   PubMed Web of Science ®Google Scholar
• Thompson PR, Wang D, Wang L, Fulco M, Pediconi N, Zhang D, et al. Regulation of the p300 HAT domain via a novel activation loop. Nat Struct Mol Biol 2004; 11:308 - 15; http://dx.doi.org/10.1038/nsmb740; PMID: 15004546
   PubMed Web of Science ®Google Scholar
• Grossman SR, Deato ME, Brignone C, Chan HM, Kung AL, Tagami H, et al. Polyubiquitination of p53 by a ubiquitin ligase activity of p300. Science 2003; 300:342 - 4; http://dx.doi.org/10.1126/science.1080386; PMID: 12690203
   PubMed Web of Science ®Google Scholar
• Shi D, Pop MS, Kulikov R, Love IM, Kung AL, Grossman SR. CBP and p300 are cytoplasmic E4 polyubiquitin ligases for p53. Proc Natl Acad Sci U S A 2009; 106:16275 - 80; http://dx.doi.org/10.1073/pnas.0904305106; PMID: 19805293
   PubMed Web of Science ®Google Scholar
• Pasini D, Malatesta M, Jung HR, Walfridsson J, Willer A, Olsson L, et al. Characterization of an antagonistic switch between histone H3 lysine 27 methylation and acetylation in the transcriptional regulation of Polycomb group target genes. Nucleic Acids Res 2010; 38:4958 - 69; http://dx.doi.org/10.1093/nar/gkq244; PMID: 20385584
   PubMed Web of Science ®Google Scholar
• Tie F, Banerjee R, Conrad PA, Scacheri PC, Harte PJ. Histone demethylase UTX and chromatin remodeler BRM bind directly to CBP and modulate acetylation of histone H3 lysine 27. Mol Cell Biol 2012; 32:2323 - 34; http://dx.doi.org/10.1128/MCB.06392-11; PMID: 22493065
   PubMed Web of Science ®Google Scholar
• Kasper LH, Lerach S, Wang J, Wu S, Jeevan T, Brindle PK. CBP/p300 double null cells reveal effect of coactivator level and diversity on CREB transactivation. EMBO J 2010; 29:3660 - 72; http://dx.doi.org/10.1038/emboj.2010.235; PMID: 20859256
   PubMed Web of Science ®Google Scholar
• Cho H, Orphanides G, Sun X, Yang XJ, Ogryzko V, Lees E, et al. A human RNA polymerase II complex containing factors that modify chromatin structure. Mol Cell Biol 1998; 18:5355 - 63; PMID: 9710619
   PubMed Web of Science ®Google Scholar
• Kwok RP, Lundblad JR, Chrivia JC, Richards JP, Bächinger HP, Brennan RG, et al. Nuclear protein CBP is a coactivator for the transcription factor CREB. Nature 1994; 370:223 - 6; http://dx.doi.org/10.1038/370223a0; PMID: 7913207
   PubMed Web of Science ®Google Scholar
• Crump NT, Hazzalin CA, Bowers EM, Alani RM, Cole PA, Mahadevan LC. Dynamic acetylation of all lysine-4 trimethylated histone H3 is evolutionarily conserved and mediated by p300/CBP. Proc Natl Acad Sci U S A 2011; 108:7814 - 9; http://dx.doi.org/10.1073/pnas.1100099108; PMID: 21518915
   PubMed Web of Science ®Google Scholar
• Cho S, Schroeder S, Kaehlcke K, Kwon HS, Pedal A, Herker E, et al. Acetylation of cyclin T1 regulates the equilibrium between active and inactive P-TEFb in cells. EMBO J 2009; 28:1407 - 17; http://dx.doi.org/10.1038/emboj.2009.99; PMID: 19387490
   PubMed Web of Science ®Google Scholar
• Fu J, Yoon HG, Qin J, Wong J. Regulation of P-TEFb elongation complex activity by CDK9 acetylation. Mol Cell Biol 2007; 27:4641 - 51; http://dx.doi.org/10.1128/MCB.00857-06; PMID: 17452463
   PubMed Web of Science ®Google Scholar
• Lilja T, Aihara H, Stabell M, Nibu Y, Mannervik M. The acetyltransferase activity of Drosophila CBP is dispensable for regulation of the Dpp pathway in the early embryo. Dev Biol 2007; 305:650 - 8; http://dx.doi.org/10.1016/j.ydbio.2007.01.036; PMID: 17336283
   PubMed Web of Science ®Google Scholar
• Lilja T, Qi D, Stabell M, Mannervik M. The CBP coactivator functions both upstream and downstream of Dpp/Screw signaling in the early Drosophila embryo. Dev Biol 2003; 262:294 - 302; http://dx.doi.org/10.1016/S0012-1606(03)00392-0; PMID: 14550792
   PubMed Web of Science ®Google Scholar