Comparative overview of RNA polymerase II and III transcription cycles, with focus on RNA polymerase III termination and reinitiation

References

• Vannini A, Cramer P. Conservation between the RNA polymerase I, II, and III transcription initiation machineries. Mol Cell 2012; 45:439 - 46; http://dx.doi.org/10.1016/j.molcel.2012.01.023; PMID: 22365827
   PubMed Web of Science ®Google Scholar
• Warner JR. The economics of ribosome biosynthesis in yeast. Trends Biochem Sci 1999; 24:437 - 40; http://dx.doi.org/10.1016/S0968-0004(99)01460-7; PMID: 10542411
   PubMed Web of Science ®Google Scholar
• Orioli A, Pascali C, Pagano A, Teichmann M, Dieci G. RNA polymerase III transcription control elements: themes and variations. Gene 2012; 493:185 - 94; http://dx.doi.org/10.1016/j.gene.2011.06.015; PMID: 21712079
   PubMed Web of Science ®Google Scholar
• Kadonaga JT. Perspectives on the RNA polymerase II core promoter. Wiley Interdiscip Rev Dev Biol 2012; 1:40 - 51; http://dx.doi.org/10.1002/wdev.21; PMID: 23801666
   PubMed Web of Science ®Google Scholar
• Schramm L, Hernandez N. Recruitment of RNA polymerase III to its target promoters. Genes Dev 2002; 16:2593 - 620; http://dx.doi.org/10.1101/gad.1018902; PMID: 12381659
   PubMed Web of Science ®Google Scholar
• Geiduschek EP, Kassavetis GA. The RNA polymerase III transcription apparatus. J Mol Biol 2001; 310:1 - 26; http://dx.doi.org/10.1006/jmbi.2001.4732; PMID: 11419933
   PubMed Web of Science ®Google Scholar
• Kassavetis GA, Geiduschek EP. Transcription factor TFIIIB and transcription by RNA polymerase III. Biochem Soc Trans 2006; 34:1082 - 7; http://dx.doi.org/10.1042/BST0341082; PMID: 17073756
   PubMed Web of Science ®Google Scholar
• Moir RD, Willis IM. Regulation of pol III transcription by nutrient and stress signaling pathways. Biochim Biophys Acta 2013; 1829:361 - 75; http://dx.doi.org/10.1016/j.bbagrm.2012.11.001; PMID: 23165150
   PubMed Web of Science ®Google Scholar
• Venters BJ, Pugh BF. Genomic organization of human transcription initiation complexes. Nature 2013; 502:53 - 8; PMID: 24048476
   PubMed Web of Science ®Google Scholar
• Nagarajavel V, Iben JR, Howard BH, Maraia RJ, Clark DJ. Global ‘bootprinting’ reveals the elastic architecture of the yeast TFIIIB-TFIIIC transcription complex in vivo. Nucleic Acids Res 2013; 41:8135 - 43; http://dx.doi.org/10.1093/nar/gkt611; PMID: 23856458
   PubMed Web of Science ®Google Scholar
• Taylor NM, Baudin F, von Scheven G, Müller CW. RNA polymerase III-specific general transcription factor IIIC contains a heterodimer resembling TFIIF Rap30/Rap74. Nucleic Acids Res 2013; 41:9183 - 96; http://dx.doi.org/10.1093/nar/gkt664; PMID: 23921640
   PubMed Web of Science ®Google Scholar
• Lee J, Moir RD, McIntosh KB, Willis IM. TOR signaling regulates ribosome and tRNA synthesis via LAMMER/Clk and GSK-3 family kinases. Mol Cell 2012; 45:836 - 43; http://dx.doi.org/10.1016/j.molcel.2012.01.018; PMID: 22364741
   PubMed Web of Science ®Google Scholar
• Nielsen S, Yuzenkova Y, Zenkin N. Mechanism of eukaryotic RNA polymerase III transcription termination. Science 2013; 340:1577 - 80; http://dx.doi.org/10.1126/science.1237934; PMID: 23812715
   PubMed Web of Science ®Google Scholar
• Nikolov DB, Burley SK. RNA polymerase II transcription initiation: a structural view. Proc Natl Acad Sci U S A 1997; 94:15 - 22; http://dx.doi.org/10.1073/pnas.94.1.15; PMID: 8990153
   PubMed Web of Science ®Google Scholar
• Ranish JA, Yudkovsky N, Hahn S. Intermediates in formation and activity of the RNA polymerase II preinitiation complex: holoenzyme recruitment and a postrecruitment role for the TATA box and TFIIB. Genes Dev 1999; 13:49 - 63; http://dx.doi.org/10.1101/gad.13.1.49; PMID: 9887099
   PubMed Web of Science ®Google Scholar
• Ha I, Roberts S, Maldonado E, Sun X, Kim LU, Green M, Reinberg D. Multiple functional domains of human transcription factor IIB: distinct interactions with two general transcription factors and RNA polymerase II. Genes Dev 1993; 7:1021 - 32; http://dx.doi.org/10.1101/gad.7.6.1021; PMID: 8504927
   PubMed Web of Science ®Google Scholar
• Buratowski S, Hahn S, Guarente L, Sharp PA. Five intermediate complexes in transcription initiation by RNA polymerase II. Cell 1989; 56:549 - 61; http://dx.doi.org/10.1016/0092-8674(89)90578-3; PMID: 2917366
   PubMed Web of Science ®Google Scholar
• Buratowski S, Zhou H. Functional domains of transcription factor TFIIB. Proc Natl Acad Sci U S A 1993; 90:5633 - 7; http://dx.doi.org/10.1073/pnas.90.12.5633; PMID: 8516312
   PubMed Web of Science ®Google Scholar
• Hahn S. Activation and the role of reinitiation in the control of transcription by RNA polymerase II. Cold Spring Harb Symp Quant Biol 1998; 63:181 - 8; http://dx.doi.org/10.1101/sqb.1998.63.181; PMID: 10384282
   PubMedGoogle Scholar
• Kassavetis GA, Driscoll R, Geiduschek EP. Mapping the principal interaction site of the Brf1 and Bdp1 subunits of Saccharomyces cerevisiae TFIIIB. J Biol Chem 2006; 281:14321 - 9; http://dx.doi.org/10.1074/jbc.M601702200; PMID: 16551611
   PubMed Web of Science ®Google Scholar
• Kassavetis GA, Braun BR, Nguyen LH, Geiduschek EP. S. cerevisiae TFIIIB is the transcription initiation factor proper of RNA polymerase III, while TFIIIA and TFIIIC are assembly factors. Cell 1990; 60:235 - 45; http://dx.doi.org/10.1016/0092-8674(90)90739-2; PMID: 2404611
   PubMed Web of Science ®Google Scholar
• Marsolier MC, Chaussivert N, Lefebvre O, Conesa C, Werner M, Sentenac A. Directing transcription of an RNA polymerase III gene via GAL4 sites. Proc Natl Acad Sci U S A 1994; 91:11938 - 42; http://dx.doi.org/10.1073/pnas.91.25.11938; PMID: 7991561
   PubMed Web of Science ®Google Scholar
• Werner M, Chaussivert N, Willis IM, Sentenac A. Interaction between a complex of RNA polymerase III subunits and the 70-kDa component of transcription factor IIIB. J Biol Chem 1993; 268:20721 - 4; PMID: 8407894
   PubMed Web of Science ®Google Scholar
• Brun I, Sentenac A, Werner M. Dual role of the C34 subunit of RNA polymerase III in transcription initiation. EMBO J 1997; 16:5730 - 41; http://dx.doi.org/10.1093/emboj/16.18.5730; PMID: 9312031
   PubMed Web of Science ®Google Scholar
• Andrau JC, Sentenac A, Werner M. Mutagenesis of yeast TFIIIB70 reveals C-terminal residues critical for interaction with TBP and C34. J Mol Biol 1999; 288:511 - 20; http://dx.doi.org/10.1006/jmbi.1999.2724; PMID: 10329159
   PubMed Web of Science ®Google Scholar
• Ferri M-L, Peyroche G, Siaut M, Lefebvre O, Carles C, Conesa C, Sentenac A. A novel subunit of yeast RNA polymerase III interacts with the TFIIB-related domain of TFIIIB70. Mol Cell Biol 2000; 20:488 - 95; http://dx.doi.org/10.1128/MCB.20.2.488-495.2000; PMID: 10611227
   PubMed Web of Science ®Google Scholar
• Dieci G, Sentenac A. Detours and shortcuts to transcription reinitiation. Trends Biochem Sci 2003; 28:202 - 9; http://dx.doi.org/10.1016/S0968-0004(03)00054-9; PMID: 12713904
   PubMed Web of Science ®Google Scholar
• Zawel L, Kumar KP, Reinberg D. Recycling of the general transcription factors during RNA polymerase II transcription. Genes Dev 1995; 9:1479 - 90; http://dx.doi.org/10.1101/gad.9.12.1479; PMID: 7601352
   PubMed Web of Science ®Google Scholar
• Sandaltzopoulos R, Becker PB. Heat shock factor increases the reinitiation rate from potentiated chromatin templates. Mol Cell Biol 1998; 18:361 - 7; PMID: 9418883
   PubMed Web of Science ®Google Scholar
• Yudkovsky N, Ranish JA, Hahn S. A transcription reinitiation intermediate that is stabilized by activator. Nature 2000; 408:225 - 9; http://dx.doi.org/10.1038/35041603; PMID: 11089979
   PubMed Web of Science ®Google Scholar
• Maraia RJ, Kenan DJ, Keene JD. Eukaryotic transcription termination factor La mediates transcript release and facilitates reinitiation by RNA polymerase III. Mol Cell Biol 1994; 14:2147 - 58; PMID: 8114745
   PubMed Web of Science ®Google Scholar
• Wang Z, Roeder RG. DNA topoisomerase I and PC4 can interact with human TFIIIC to promote both accurate termination and transcription reinitiation by RNA polymerase III. Mol Cell 1998; 1:749 - 57; http://dx.doi.org/10.1016/S1097-2765(00)80074-X; PMID: 9660958
   PubMed Web of Science ®Google Scholar
• Kassavetis GA, Riggs DL, Negri R, Nguyen LH, Geiduschek EP. Transcription factor IIIB generates extended DNA interactions in RNA polymerase III transcription complexes on tRNA genes. Mol Cell Biol 1989; 9:2551 - 66; PMID: 2668737
   PubMed Web of Science ®Google Scholar
• Roberts DN, Stewart AJ, Huff JT, Cairns BR. The RNA polymerase III transcriptome revealed by genome-wide localization and activity-occupancy relationships. Proc Natl Acad Sci U S A 2003; 100:14695 - 700; http://dx.doi.org/10.1073/pnas.2435566100; PMID: 14634212
   PubMed Web of Science ®Google Scholar
• Joazeiro CA, Kassavetis GA, Geiduschek EP. Alternative outcomes in assembly of promoter complexes: the roles of TBP and a flexible linker in placing TFIIIB on tRNA genes. Genes Dev 1996; 10:725 - 39; http://dx.doi.org/10.1101/gad.10.6.725; PMID: 8598299
   PubMed Web of Science ®Google Scholar
• Hamada M, Huang Y, Lowe TM, Maraia RJ. Widespread use of TATA elements in the core promoters for RNA polymerases III, II, and I in fission yeast. Mol Cell Biol 2001; 21:6870 - 81; http://dx.doi.org/10.1128/MCB.21.20.6870-6881.2001; PMID: 11564871
   PubMed Web of Science ®Google Scholar
• Braun BR, Bartholomew B, Kassavetis GA, Geiduschek EP. Topography of transcription factor complexes on the Saccharomyces cerevisiae 5 S RNA gene. J Mol Biol 1992; 228:1063 - 77; http://dx.doi.org/10.1016/0022-2836(92)90315-B; PMID: 1474578
   PubMed Web of Science ®Google Scholar
• Bardeleben C, Kassavetis GA, Geiduschek EP. Encounters of Saccharomyces cerevisiae RNA polymerase III with its transcription factors during RNA chain elongation. J Mol Biol 1994; 235:1193 - 205; http://dx.doi.org/10.1006/jmbi.1994.1073; PMID: 8308884
   PubMed Web of Science ®Google Scholar
• Ferrari R, Rivetti C, Acker J, Dieci G. Distinct roles of transcription factors TFIIIB and TFIIIC in RNA polymerase III transcription reinitiation. Proc Natl Acad Sci U S A 2004; 101:13442 - 7; http://dx.doi.org/10.1073/pnas.0403851101; PMID: 15347814
   PubMed Web of Science ®Google Scholar
• Soragni E, Kassavetis GA. Absolute gene occupancies by RNA polymerase III, TFIIIB, and TFIIIC in Saccharomyces cerevisiae. J Biol Chem 2008; 283:26568 - 76; http://dx.doi.org/10.1074/jbc.M803769200; PMID: 18667429
   PubMed Web of Science ®Google Scholar
• Mayer A, Heidemann M, Lidschreiber M, Schreieck A, Sun M, Hintermair C, Kremmer E, Eick D, Cramer P. CTD tyrosine phosphorylation impairs termination factor recruitment to RNA polymerase II. Science 2012; 336:1723 - 5; http://dx.doi.org/10.1126/science.1219651; PMID: 22745433
   PubMed Web of Science ®Google Scholar
• Le Martelot G, Canella D, Symul L, Migliavacca E, Gilardi F, Liechti R, Martin O, Harshman K, Delorenzi M, Desvergne B, et al, CycliX Consortium. Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles. PLoS Biol 2012; 10:e1001442; http://dx.doi.org/10.1371/journal.pbio.1001442; PMID: 23209382
   PubMedGoogle Scholar
• Boguta M. Maf1, a general negative regulator of RNA polymerase III in yeast. Biochim Biophys Acta 2013; 1829:376 - 84; http://dx.doi.org/10.1016/j.bbagrm.2012.11.004; PMID: 23201230
   PubMed Web of Science ®Google Scholar
• Upadhya R, Lee J, Willis IM. Maf1 is an essential mediator of diverse signals that repress RNA polymerase III transcription. Mol Cell 2002; 10:1489 - 94; http://dx.doi.org/10.1016/S1097-2765(02)00787-6; PMID: 12504022
   PubMed Web of Science ®Google Scholar
• Harismendy O, Gendrel CG, Soularue P, Gidrol X, Sentenac A, Werner M, Lefebvre O. Genome-wide location of yeast RNA polymerase III transcription machinery. EMBO J 2003; 22:4738 - 47; http://dx.doi.org/10.1093/emboj/cdg466; PMID: 12970186
   PubMed Web of Science ®Google Scholar
• Kumar Y, Bhargava P. A unique nucleosome arrangement, maintained actively by chromatin remodelers facilitates transcription of yeast tRNA genes. BMC Genomics 2013; 14:402; http://dx.doi.org/10.1186/1471-2164-14-402; PMID: 23767421
   PubMed Web of Science ®Google Scholar
• Braun BR, Bartholomew B, Kassavetis GA, Geiduschek EP. Topography of transcription factor complexes on the Saccharomyces cerevisiae 5 S RNA gene. J Mol Biol 1992; 228:1063 - 77; http://dx.doi.org/10.1016/0022-2836(92)90315-B; PMID: 1474578
   PubMed Web of Science ®Google Scholar
• Bartholomew B, Kassavetis GA, Braun BR, Geiduschek EP. The subunit structure of Saccharomyces cerevisiae transcription factor IIIC probed with a novel photocrosslinking reagent. EMBO J 1990; 9:2197 - 205; PMID: 2100996
   PubMed Web of Science ®Google Scholar
• Schultz P, Marzouki N, Marck C, Ruet A, Oudet P, Sentenac A. The two DNA-binding domains of yeast transcription factor tau as observed by scanning transmission electron microscopy. EMBO J 1989; 8:3815 - 24; PMID: 2684647
   PubMed Web of Science ®Google Scholar
• Eschenlauer JB, Kaiser MW, Gerlach VL, Brow DA. Architecture of a yeast U6 RNA gene promoter. Mol Cell Biol 1993; 13:3015 - 26; PMID: 8474459
   PubMed Web of Science ®Google Scholar
• Bartholomew B, Braun BR, Kassavetis GA, Geiduschek EP. Probing close DNA contacts of RNA polymerase III transcription complexes with the photoactive nucleoside 4-thiodeoxythymidine. J Biol Chem 1994; 269:18090 - 5; PMID: 8027070
   PubMed Web of Science ®Google Scholar
• Burnol AF, Margottin F, Schultz P, Marsolier MC, Oudet P, Sentenac A. Basal promoter and enhancer element of yeast U6 snRNA gene. J Mol Biol 1993; 233:644 - 58; http://dx.doi.org/10.1006/jmbi.1993.1542; PMID: 8411171
   PubMed Web of Science ®Google Scholar
• Braun BR, Riggs DL, Kassavetis GA, Geiduschek EP. Multiple states of protein-DNA interaction in the assembly of transcription complexes on Saccharomyces cerevisiae 5S ribosomal RNA genes. Proc Natl Acad Sci U S A 1989; 86:2530 - 4; http://dx.doi.org/10.1073/pnas.86.8.2530; PMID: 2649882
   PubMed Web of Science ®Google Scholar
• Thuillier V, Stettler S, Sentenac A, Thuriaux P, Werner M. A mutation in the C31 subunit of Saccharomyces cerevisiae RNA polymerase III affects transcription initiation. EMBO J 1995; 14:351 - 9; PMID: 7835345
   PubMed Web of Science ®Google Scholar
• Wang Z, Roeder RG. Three human RNA polymerase III-specific subunits form a subcomplex with a selective function in specific transcription initiation. Genes Dev 1997; 11:1315 - 26; http://dx.doi.org/10.1101/gad.11.10.1315; PMID: 9171375
   PubMed Web of Science ®Google Scholar
• Carter R, Drouin G. The increase in the number of subunits in eukaryotic RNA polymerase III relative to RNA polymerase II is due to the permanent recruitment of general transcription factors. Mol Biol Evol 2010; 27:1035 - 43; http://dx.doi.org/10.1093/molbev/msp316; PMID: 20026480
   PubMed Web of Science ®Google Scholar
• Grünberg S, Warfield L, Hahn S. Architecture of the RNA polymerase II preinitiation complex and mechanism of ATP-dependent promoter opening. Nat Struct Mol Biol 2012; 19:788 - 96; http://dx.doi.org/10.1038/nsmb.2334; PMID: 22751016
   PubMed Web of Science ®Google Scholar
• Wu CC, Herzog F, Jennebach S, Lin YC, Pai CY, Aebersold R, Cramer P, Chen HT. RNA polymerase III subunit architecture and implications for open promoter complex formation. Proc Natl Acad Sci U S A 2012; 109:19232 - 7; http://dx.doi.org/10.1073/pnas.1211665109; PMID: 23132938
   PubMed Web of Science ®Google Scholar
• Maxon ME, Goodrich JA, Tjian R. Transcription factor IIE binds preferentially to RNA polymerase IIa and recruits TFIIH: a model for promoter clearance. Genes Dev 1994; 8:515 - 24; http://dx.doi.org/10.1101/gad.8.5.515; PMID: 7926747
   PubMed Web of Science ®Google Scholar
• Ohkuma Y, Roeder RG. Regulation of TFIIH ATPase and kinase activities by TFIIE during active initiation complex formation. Nature 1994; 368:160 - 3; http://dx.doi.org/10.1038/368160a0; PMID: 8166891
   PubMed Web of Science ®Google Scholar
• Ohkuma Y, Hashimoto S, Wang CK, Horikoshi M, Roeder RG. Analysis of the role of TFIIE in basal transcription and TFIIH-mediated carboxy-terminal domain phosphorylation through structure-function studies of TFIIE-alpha. Mol Cell Biol 1995; 15:4856 - 66; PMID: 7651404
   PubMed Web of Science ®Google Scholar
• Egly JM, Coin F. A history of TFIIH: two decades of molecular biology on a pivotal transcription/repair factor. DNA Repair (Amst) 2011; 10:714 - 21; http://dx.doi.org/10.1016/j.dnarep.2011.04.021; PMID: 21592869
   PubMed Web of Science ®Google Scholar
• Compe E, Egly J-M. TFIIH: when transcription met DNA repair. Nat Rev Mol Cell Biol 2012; 13:343 - 54; http://dx.doi.org/10.1038/nrm3350; PMID: 22572993
   PubMed Web of Science ®Google Scholar
• Kassavetis GA, Prakash P, Shim E. The C53/C37 subcomplex of RNA polymerase III lies near the active site and participates in promoter opening. J Biol Chem 2010; 285:2695 - 706; http://dx.doi.org/10.1074/jbc.M109.074013; PMID: 19940126
   PubMed Web of Science ®Google Scholar
• Vannini A. A Structural Perspective on RNA Polymerase I and RNA Polymerase III Transcription Machineries. Biochim Biophys Acta 2012; PMID: 23031840
   PubMed Web of Science ®Google Scholar
• Landrieux E, Alic N, Ducrot C, Acker J, Riva M, Carles C. A subcomplex of RNA polymerase III subunits involved in transcription termination and reinitiation. EMBO J 2006; 25:118 - 28; http://dx.doi.org/10.1038/sj.emboj.7600915; PMID: 16362040
   PubMed Web of Science ®Google Scholar
• Wu CC, Lin YC, Chen HT. The TFIIF-like Rpc37/53 dimer lies at the center of a protein network to connect TFIIIC, Bdp1, and the RNA polymerase III active center. Mol Cell Biol 2011; 31:2715 - 28; http://dx.doi.org/10.1128/MCB.05151-11; PMID: 21536656
   PubMed Web of Science ®Google Scholar
• Geiduschek EP, Kassavetis GA. Transcription: adjusting to adversity by regulating RNA polymerase. Curr Biol 2006; 16:R849 - 51; http://dx.doi.org/10.1016/j.cub.2006.08.071; PMID: 17027482
   PubMedGoogle Scholar
• Willis IM, Moir RD. Integration of nutritional and stress signaling pathways by Maf1. Trends Biochem Sci 2007; 32:51 - 3; http://dx.doi.org/10.1016/j.tibs.2006.12.001; PMID: 17174096
   PubMed Web of Science ®Google Scholar
• Chédin S, Riva M, Schultz P, Sentenac A, Carles C. The RNA cleavage activity of RNA polymerase III is mediated by an essential TFIIS-like subunit and is important for transcription termination. Genes Dev 1998; 12:3857 - 71; http://dx.doi.org/10.1101/gad.12.24.3857; PMID: 9869639
   PubMed Web of Science ®Google Scholar
• Fernández-Tornero C, Böttcher B, Rashid UJ, Steuerwald U, Flörchinger B, Devos DP, Lindner D, Müller CW. Conformational flexibility of RNA polymerase III during transcriptional elongation. EMBO J 2010; 29:3762 - 72; http://dx.doi.org/10.1038/emboj.2010.266; PMID: 20967027
   PubMed Web of Science ®Google Scholar
• Yee NS, Gong W, Huang Y, Lorent K, Dolan AC, Maraia RJ, Pack M. Mutation of RNA Pol III subunit rpc2/polr3b Leads to Deficiency of Subunit Rpc11 and disrupts zebrafish digestive development. PLoS Biol 2007; 5:e312; http://dx.doi.org/10.1371/journal.pbio.0050312; PMID: 18044988
   PubMed Web of Science ®Google Scholar
• Van Mullem V, Landrieux E, Vandenhaute J, Thuriaux P. Rpa12p, a conserved RNA polymerase I subunit with two functional domains. Mol Microbiol 2002; 43:1105 - 13; http://dx.doi.org/10.1046/j.1365-2958.2002.02824.x; PMID: 11918799
   PubMed Web of Science ®Google Scholar
• Izban MG, Luse DS. The RNA polymerase II ternary complex cleaves the nascent transcript in a 3′----5′ direction in the presence of elongation factor SII. Genes Dev 1992; 6:1342 - 56; http://dx.doi.org/10.1101/gad.6.7.1342; PMID: 1378419
   PubMed Web of Science ®Google Scholar
• Wind M, Reines D. Transcription elongation factor SII. Bioessays 2000; 22:327 - 36; http://dx.doi.org/10.1002/(SICI)1521-1878(200004)22:4<327::AID-BIES3>3.0.CO;2-4; PMID: 10723030
   PubMed Web of Science ®Google Scholar
• Arimbasseri AG, Rijal K, Maraia RJ. Transcription termination by the eukaryotic RNA polymerase III. Biochim Biophys Acta 2013; 1829:318 - 30; http://dx.doi.org/10.1016/j.bbagrm.2012.10.006; PMID: 23099421
   PubMed Web of Science ®Google Scholar
• Nudler E. RNA polymerase backtracking in gene regulation and genome instability. Cell 2012; 149:1438 - 45; http://dx.doi.org/10.1016/j.cell.2012.06.003; PMID: 22726433
   PubMed Web of Science ®Google Scholar
• Borukhov S, Sagitov V, Goldfarb A. Transcript cleavage factors from E. coli. Cell 1993; 72:459 - 66; http://dx.doi.org/10.1016/0092-8674(93)90121-6; PMID: 8431948
   PubMed Web of Science ®Google Scholar
• Cheung AC, Cramer P. Structural basis of RNA polymerase II backtracking, arrest and reactivation. Nature 2011; 471:249 - 53; http://dx.doi.org/10.1038/nature09785; PMID: 21346759
   PubMed Web of Science ®Google Scholar
• Komissarova N, Kashlev M. Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3′ end of the RNA intact and extruded. Proc Natl Acad Sci U S A 1997; 94:1755 - 60; http://dx.doi.org/10.1073/pnas.94.5.1755; PMID: 9050851
   PubMed Web of Science ®Google Scholar
• Nudler E, Mustaev A, Lukhtanov E, Goldfarb A. The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase. Cell 1997; 89:33 - 41; http://dx.doi.org/10.1016/S0092-8674(00)80180-4; PMID: 9094712
   PubMed Web of Science ®Google Scholar
• Conaway JW, Shilatifard A, Dvir A, Conaway RC. Control of elongation by RNA polymerase II. Trends Biochem Sci 2000; 25:375 - 80; http://dx.doi.org/10.1016/S0968-0004(00)01615-7; PMID: 10916156
   PubMed Web of Science ®Google Scholar
• Sims RJ 3rd, Belotserkovskaya R, Reinberg D. Elongation by RNA polymerase II: the short and long of it. Genes Dev 2004; 18:2437 - 68; http://dx.doi.org/10.1101/gad.1235904; PMID: 15489290
   PubMed Web of Science ®Google Scholar
• Zhou Q, Li T, Price DH. RNA polymerase II elongation control. Annu Rev Biochem 2012; 81:119 - 43; http://dx.doi.org/10.1146/annurev-biochem-052610-095910; PMID: 22404626
   PubMed Web of Science ®Google Scholar
• Richard P, Manley JL. Transcription termination by nuclear RNA polymerases. Genes Dev 2009; 23:1247 - 69; http://dx.doi.org/10.1101/gad.1792809; PMID: 19487567
   PubMed Web of Science ®Google Scholar
• Campbell FE Jr., Setzer DR. Transcription termination by RNA polymerase III: uncoupling of polymerase release from termination signal recognition. Mol Cell Biol 1992; 12:2260 - 72; PMID: 1314952
   PubMed Web of Science ®Google Scholar
• Arimbasseri AG, Maraia RJ. Distinguishing core and holoenzyme mechanisms of transcription termination by RNA polymerase III. Mol Cell Biol 2013; 33:1571 - 81; http://dx.doi.org/10.1128/MCB.01733-12; PMID: 23401852
   PubMed Web of Science ®Google Scholar
• Iben JR, Mazeika JK, Hasson S, Rijal K, Arimbasseri AG, Russo AN, Maraia RJ. Point mutations in the Rpb9-homologous domain of Rpc11 that impair transcription termination by RNA polymerase III. Nucleic Acids Res 2011; 39:6100 - 13; http://dx.doi.org/10.1093/nar/gkr182; PMID: 21450810
   PubMed Web of Science ®Google Scholar
• Huang Y, Intine RV, Mozlin A, Hasson S, Maraia RJ. Mutations in the RNA polymerase III subunit Rpc11p that decrease RNA 3′ cleavage activity increase 3′-terminal oligo(U) length and La-dependent tRNA processing. Mol Cell Biol 2005; 25:621 - 36; http://dx.doi.org/10.1128/MCB.25.2.621-636.2005; PMID: 15632064
   PubMed Web of Science ®Google Scholar
• Kuhn CD, Geiger SR, Baumli S, Gartmann M, Gerber J, Jennebach S, Mielke T, Tschochner H, Beckmann R, Cramer P. Functional architecture of RNA polymerase I. Cell 2007; 131:1260 - 72; http://dx.doi.org/10.1016/j.cell.2007.10.051; PMID: 18160037
   PubMed Web of Science ®Google Scholar
• Peters JM, Vangeloff AD, Landick R. Bacterial transcription terminators: the RNA 3′-end chronicles. J Mol Biol 2011; 412:793 - 813; http://dx.doi.org/10.1016/j.jmb.2011.03.036; PMID: 21439297
   PubMed Web of Science ®Google Scholar
• Spitalny P, Thomm M. A polymerase III-like reinitiation mechanism is operating in regulation of histone expression in archaea. Mol Microbiol 2008; 67:958 - 70; http://dx.doi.org/10.1111/j.1365-2958.2007.06084.x; PMID: 18182021
   PubMed Web of Science ®Google Scholar
• Wang X, Folk WR. Termination of transcription by RNA polymerase III from wheat germ. J Biol Chem 1994; 269:4993 - 5004; PMID: 8106475
   PubMed Web of Science ®Google Scholar
• French SL, Osheim YN, Schneider DA, Sikes ML, Fernandez CF, Copela LA, Misra VA, Nomura M, Wolin SL, Beyer AL. Visual analysis of the yeast 5S rRNA gene transcriptome: regulation and role of La protein. Mol Cell Biol 2008; 28:4576 - 87; http://dx.doi.org/10.1128/MCB.00127-08; PMID: 18474615
   PubMed Web of Science ®Google Scholar
• Moir RD, Willis IM. Regulation of pol III transcription by nutrient and stress signaling pathways. Biochim Biophys Acta 2012; PMID: 23165150
   PubMed Web of Science ®Google Scholar
• Zamft B, Bintu L, Ishibashi T, Bustamante C. Nascent RNA structure modulates the transcriptional dynamics of RNA polymerases. Proc Natl Acad Sci U S A 2012; 109:8948 - 53; http://dx.doi.org/10.1073/pnas.1205063109; PMID: 22615360
   PubMed Web of Science ®Google Scholar
• Bobkova EV, Habib N, Alexander G, Hall BD. Mutational analysis of the hydrolytic activity of yeast RNA polymerase III. J Biol Chem 1999; 274:21342 - 8; http://dx.doi.org/10.1074/jbc.274.30.21342; PMID: 10409694
   PubMed Web of Science ®Google Scholar
• Rijal K, Maraia RJ. RNA polymerase III mutants in TFIIFα-like C37 that cause terminator readthrough with no decrease in transcription output. Nucleic Acids Res 2013; 41:139 - 55; http://dx.doi.org/10.1093/nar/gks985; PMID: 23093604
   PubMed Web of Science ®Google Scholar
• White RJ. RNA polymerases I and III, growth control and cancer. Nat Rev Mol Cell Biol 2005; 6:69 - 78; http://dx.doi.org/10.1038/nrm1551; PMID: 15688068
   PubMed Web of Science ®Google Scholar
• Marshall L, Goodfellow SJ, White RJ. Diminished activity of RNA polymerase III selectively disrupts tissues with the most actively dividing cells. PLoS Biol 2007; 5:e286; http://dx.doi.org/10.1371/journal.pbio.0050286; PMID: 20076650
   PubMedGoogle Scholar
• Ghaemmaghami S, Huh W-K, Bower K, Howson RW, Belle A, Dephoure N, O’Shea EK, Weissman JS. Global analysis of protein expression in yeast. Nature 2003; 425:737 - 41; http://dx.doi.org/10.1038/nature02046; PMID: 14562106
   PubMed Web of Science ®Google Scholar
• Dieci G, Sentenac A. Facilitated recycling pathway for RNA polymerase III. Cell 1996; 84:245 - 52; http://dx.doi.org/10.1016/S0092-8674(00)80979-4; PMID: 8565070
   PubMed Web of Science ®Google Scholar
• Marguerat S, Schmidt A, Codlin S, Chen W, Aebersold R, Bähler J. Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells. Cell 2012; 151:671 - 83; http://dx.doi.org/10.1016/j.cell.2012.09.019; PMID: 23101633
   PubMed Web of Science ®Google Scholar
• Cabart P, Lee J, Willis IM. Facilitated recycling protects human RNA polymerase III from repression by Maf1 in vitro. J Biol Chem 2008; 283:36108 - 17; http://dx.doi.org/10.1074/jbc.M807538200; PMID: 18974046
   PubMed Web of Science ®Google Scholar
• Desai N, Lee J, Upadhya R, Chu Y, Moir RD, Willis IM. Two steps in Maf1-dependent repression of transcription by RNA polymerase III. J Biol Chem 2005; 280:6455 - 62; http://dx.doi.org/10.1074/jbc.M412375200; PMID: 15590667
   PubMed Web of Science ®Google Scholar
• Maraia RJ. Transcription termination factor La is also an initiation factor for RNA polymerase III. Proc Natl Acad Sci U S A 1996; 93:3383 - 7; http://dx.doi.org/10.1073/pnas.93.8.3383; PMID: 8622944
   PubMed Web of Science ®Google Scholar
• Hopper AK, Pai DA, Engelke DR. Cellular dynamics of tRNAs and their genes. FEBS Lett 2010; 584:310 - 7; http://dx.doi.org/10.1016/j.febslet.2009.11.053; PMID: 19931532
   PubMed Web of Science ®Google Scholar