Cyclin-Dependent Kinases as Drug Targets for Cell Growth and Proliferation Disorders. A Role for Systems Biology Approach in Drug Development. Part II—CDKs as Drug Targets in Hypertrophic Cell Growth. Modelling of Drugs Targeting CDKs

REFERENCES

• de Azevedo W.F. Jr., Canduri F., da Silveira N.J. (2002) Biochem. Biophys. Res. Commun., 293, 566–571.
   PubMed Web of Science ®Google Scholar
• Bansal M., Della Gatta G., Wierzbowski J., Gardner T., di Bernardo D. (2005) conf. Proc. IEEE Eng. Med. Biol. Soc., 5, 4739–4742.
   Google Scholar
• Bansal M., Gatta, G.D., Bernardo, D. D. (2006) Bioinformatics, 22, 815–822.
   PubMed Web of Science ®Google Scholar
• Berberich N., Uhl B., Joore J., Schmerwitz U.K., Mayer B.A., Reichel C.A., Krombach F., Zahler S., Vollmar A.M., Fürst R. (2011) Br. J. Pharmacol., 163, 1086–1098.
   PubMedGoogle Scholar
• Bernardo D.D., Thompson M.J., Gardner T.S., Chobot S.E., Eastwood E.L., Wojtovich A.P., Elliott S.J., Schaus S.E. Collins J.J. (2005) Nat. Biotechnol., 23, 377–383.
   PubMed Web of Science ®Google Scholar
• Brazhnik P., Fuente A., Mendes P. (2002) Trends Biotechnol., 20, 467–472.
   PubMedGoogle Scholar
• Chakarov S., Chakalova L., Tencheva Z., Ganev V., Angelova A. (2000) Life Sci., 66, 1725–1731.
   PubMed Web of Science ®Google Scholar
• Chen L., Wang R.S., Zhang X. (2009) Biomolecular networks. Methods and Applications in Systems Biology, John Wiley and Sons, New York.
   Google Scholar
• Chiefari E., Tanyolaç S., Paonessa F., Pullinger C.R., Capula C., Iiritano S., Mazza T., Forlin M., Fusco A., Durlach V., Durlach A., Malloy M.J., Kane J.P., Heiner S.W., Filocamo M., Foti D.P., Goldfine I.D., Brunetti A. (2011) JAMA, 305, 903–912.
   PubMed Web of Science ®Google Scholar
• Chua H.N., Roth F.P. (2011) J. Biol. Chem., 286, 23653–23658.
   PubMedGoogle Scholar
• Clyde R.G., Tummala H., Khalil H.S., Goszcz K., Lucka I.,. Tupone M.G.., Zwirek M., Cavicchi L., Vallatur J., Stoyanova V., Mitev V., Zhelev N. (2011) Curr. Opin. Biotech., 22(S1),S58.
   Google Scholar
• Clyde R.G., Bown J.L. Hupp T.R. Zhelev N., Crawford J.W. (2006) J. R. Soc. Interface, 3, 617–627.
   PubMedGoogle Scholar
• De Falco M., De Luca A. (2010) Curr. Pharm. Des., 16, 1417–1426.
   PubMed Web of Science ®Google Scholar
• Dement G.A., Treff N.R., Magnuson N.S., Franceschi V., Reeves R. (2005) EXP. cell Res., 307, 388–401.
   PubMedGoogle Scholar
• Du J., Wei N., Guan T., Xu H., An J., Pritchard K.A. Jr., Shi Y. (2009) Am. J. Physiol. cell Physiol., 297, c742–749.
   Google Scholar
• Fisher J., Piterman N. (2010) Brief Funct. Genomics, 9, 79–92.
   PubMedGoogle Scholar
• Foti D., Chiefari E., Fedele M., Iuliano R., Brunetti L., Paonessa F., Manfioletti G., Barbetti F., Brunetti A., Croce C.M., Fusco A., Brunetti A. (2005) nat. Med., 11, 765–773.
   PubMed Web of Science ®Google Scholar
• Gao X.M., Kiriazis H., Moore X.L., Feng X.H., Sheppard K., Dart A., Du X.J. (2005) Am. J. Physiol. Heart. circ. Physiol., 288(6),H2702–2707.
   Google Scholar
• Gardner T.S., Bernardo D.D., Lorenz D., Collins J.J. (2003) Science, 301, 102–105.
   PubMed Web of Science ®Google Scholar
• Goutsias J., Lee N.H. (2007) Curr. Pharm. Des., 13, 1415–1436.
   PubMed Web of Science ®Google Scholar
• Idowu M.A., Bown J. (2011) J. Comput. Sci. Syst. Biol., 4: 4, http://dx.doi.org/10.4172/jcsb.1000077
   Google Scholar
• Idowu M.A., Goltsov A., Khalil H.S., Tummala H., Zhelev N., Bown J. (2011) Curr. Opin. Biotech., 22(S1) S59.
   Google Scholar
• Jhou R.S., Sun K.H., Sun G.H., Wang H.H., Chang C.I., Huang H.C., Lu S.Y., Tang S.J. (2009) Cell Prolif., 42, 141–149.
   PubMedGoogle Scholar
• Kim C.S. (2007) BMC Bioinformatics, 8, 251.
   PubMedGoogle Scholar
• Kitani K., Oguma S., Nishiki T., Ohmori I., Galons H., Matsui H., Meijer L., Tomizawa K. (2007) J. Physiol. Sci., 57, 235–239.
   PubMed Web of Science ®Google Scholar
• Krystof V., Chamrád I., Jorda R., Kohoutek J. (2010) Med. Res. Rev., 30, 646–666.
   PubMed Web of Science ®Google Scholar
• Lander A.D., Gokoffski K.K., Wan F.Y., Nie Q., Calof A.L. (2009) PLOS Biol., 7(1),e15.
   Google Scholar
• Liebl J., Krystof V., Vereb G., Takács L., Strnad M., Pechan P., Havlicek L., Zatloukal M., Fürst R., Vollmar A.M., Zahler S. (2011) Angiogenesis, 14, 281–291.
   PubMed Web of Science ®Google Scholar
• McClue S., Fischer P.M., Blake D., Clarke R., Duff S., Krauss E., Cummings L., Stewart K., Melville J., Wang S., Zhelev N., Zheleva D. (2002) Proc. Am. Assoc. canc. Res., 43, 666.
   Google Scholar
• Novák B., Tyson J.J. (2003) Biochem. Soc trans., 31, 1526–1529.
   PubMed Web of Science ®Google Scholar
• Pappalardo F., Zhang P., Halling-Brown M., Basford K., Scalia A., Shepherd A., Moss D., Motta S., Brusic V. (2008) Current Pharmacogenomics and Personalized Medicine, 6, 260–271.
   Google Scholar
• Pennisi M., Pappalardo F., Palladini A., Nicoletti G., Nanni P., Lollini PL., Motta S. (2010) BMC Bioinformatics, 11(Suppl 7),S13.
   PubMedGoogle Scholar
• Petkova R., Tummala H., Zhelev N. (2011) Biotechnol. Biotech. Eq., 25(4), 2572–2575.
   Web of Science ®Google Scholar
• Reeves R., Langan T.A., Nissen M.S. (1991) Proc. Natl. Acad. Sci. U.S.A., 188, 1671–1675.
   Google Scholar
• Romano G., Giordano A. (2008) Cell cycle, 7, 3664–3668.
   PubMed Web of Science ®Google Scholar
• van Someren E.P., Wessels L.F., Backer E., Reinders M.J. (2002) Pharmacogenomics, 3, 507–525.
   PubMedGoogle Scholar
• Stoyanova V., Zhelev N., Ghenev E., Bosheva M. (2009) Kardiol. Pol., 67, 27–35.
   PubMedGoogle Scholar
• Stoyanova V., Zhelev N. (2008) Biotechnol. Biotech. Eq., 22(4), 977–983.
   Web of Science ®Google Scholar
• Stoyanova V.K. Zhelev N.Z., Yanev I.B. Ghenev E.D. Nachev C.K.. (2005) Folia Med., 4, 52–57.
   Google Scholar
• Tamrakar S., Kapasi A.J., Spector D.H. (2005) J. Virol., 79, 15477–15493.
   PubMedGoogle Scholar
• Ubeda M., Rukstalis J.M., Habener J.F. (2006) J. Biol. Chem., 281, 28858–28864.
   PubMed Web of Science ®Google Scholar
• Vera J., Balsa-Canto E., Wellstead P., Banga J.R., Wolkenhauer O. (2007) Cell Signal., 19, 1531–1541.
   PubMedGoogle Scholar
• Vermeulen K., Van Bockstaele D.R., Berneman Z.N. (2003) Cell Prolif., 36, 131–149.
   PubMed Web of Science ®Google Scholar
• Voit E.O. (2000) Computational Analysis of Biochemical Systems. A Practical Guide for Biochemists and Molecular Biologists, Cambridge University Press, Cambridge.
   Google Scholar
• Voit EO. (2002) Drug Discov. Today., 7, 621–628.
   PubMedGoogle Scholar
• Voit EO. (2008) Essays Biochem., 45, 29–40.
   PubMedGoogle Scholar
• Wang S., Fischer P.M. (2008) Trends Pharmacol. Sci. 29, 302–313.
   PubMed Web of Science ®Google Scholar
• Wang S., Griffiths, G., Midgley C.A., Barnett A.L., Cooper M., Grabarek J., Ingram L., Jackson W., Kontopidis G., McClue S.J., McInnes C., McLachlan, J., Meades C., Mezna M., Stuart I., Thomas M.P., Zheleva D.I., Lane D.P., Jackson R.C., Glover D.M., Blake D.G., Fischer P.M. (2010) Chem. Biol., 17, 1111–1121.
   PubMed Web of Science ®Google Scholar
• Wang Y., Wang R. S., Joshi T., Xu D., Zhang X. S., Chen L., Xia Y. (2009) In: Computational Methodologies in Gene Regulatory Networks (S. Das, D. Caragea, W.H. Hsu, S.M. Welch, Eds.), IGI Global, Kansas.
   Google Scholar
• Wei F.Y., Tomizawa K. (2007) Mini Rev. Med. Chem., 7, 1070–1074.
   PubMed Web of Science ®Google Scholar