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British Poultry Science Volume 61, 2020 - Issue 2

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Physiology, endocrinology & reproduction

Differential gene expression profiling of the goose pineal gland

X. YuanInstitute of Animal Genetics and Breeding, College of Animal Science and Technology, Sichuan Agricultural University, Ya’an, Sichuan, P.R.China;Animal husbandry and veterinary medicine, Chengdu Agriculture College, Wenjiang, Sichuan, P.R.China

G. LanInstitute of Animal Genetics and Breeding, College of Animal Science and Technology, Sichuan Agricultural University, Ya’an, Sichuan, P.R.China

L. LiInstitute of Animal Genetics and Breeding, College of Animal Science and Technology, Sichuan Agricultural University, Ya’an, Sichuan, P.R.China

H. HeInstitute of Animal Genetics and Breeding, College of Animal Science and Technology, Sichuan Agricultural University, Ya’an, Sichuan, P.R.China

J. WangInstitute of Animal Genetics and Breeding, College of Animal Science and Technology, Sichuan Agricultural University, Ya’an, Sichuan, P.R.ChinaCorrespondence[email protected]

S. HuInstitute of Animal Genetics and Breeding, College of Animal Science and Technology, Sichuan Agricultural University, Ya’an, Sichuan, P.R.China

Pages 200-208 | Received 15 Feb 2019, Accepted 23 Oct 2019, Published online: 24 Feb 2020

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https://doi.org/10.1080/00071668.2019.1698014
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Figure S1. Error distribution of the digital gene expression tag libraries generated from each sample. The error-rate (y-axis) increased as sequencing reads (x-axis) increased.

Download JPEG Image (964.5 KB)

Figure S2. GC content distribution of the digital gene expression tag libraries generated from each sample. GC content percent (y-axis) distributed with sequencing reads (x-axis) increased.

Download JPEG Image (718.7 KB)

Figure S3. Distribution of each libraries reads in different regions of reference genome.

Download JPEG Image (497.4 KB)

Figure S4. Distribution of total mapped reads density in anser cygnoides chromosomes.

Download JPEG Image (1.5 MB)

Figure S5. The Pearson’s correlation coefficients between two samples.

Download JPEG Image (458 KB)

Figure S6. RPKM distribution of different genes in each sample, x-axis means sample names, y-axis means log10(RPKM).

Download JPEG Image (374.8 KB)

Figure S7. RPKM density distribution of different genes in each sample. x-axis represent log10(RPKM), y-axis represent gene density.

Download JPEG Image (395.9 KB)

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Differential gene expression profiling of the goose pineal gland

Figure S1. Error distribution of the digital gene expression tag libraries generated from each sample. The error-rate (y-axis) increased as sequencing reads (x-axis) increased.

Figure S2. GC content distribution of the digital gene expression tag libraries generated from each sample. GC content percent (y-axis) distributed with sequencing reads (x-axis) increased.

Figure S3. Distribution of each libraries reads in different regions of reference genome.

Figure S4. Distribution of total mapped reads density in anser cygnoides chromosomes.

Figure S5. The Pearson’s correlation coefficients between two samples.

Figure S6. RPKM distribution of different genes in each sample, x-axis means sample names, y-axis means log10(RPKM).

Figure S7. RPKM density distribution of different genes in each sample. x-axis represent log10(RPKM), y-axis represent gene density.

Table S1. Details of the primers used for quantitative real-time PCR analysis.

Table S2. Details of the genes differentially expressed between two sample.

Table S3. Significantly enriched GO terms in DEGs.

Table S4. Pathway enrichment analysis of DEGs.

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Differential gene expression profiling of the goose pineal gland

Figure S1. Error distribution of the digital gene expression tag libraries generated from each sample. The error-rate (y-axis) increased as sequencing reads (x-axis) increased.

Figure S2. GC content distribution of the digital gene expression tag libraries generated from each sample. GC content percent (y-axis) distributed with sequencing reads (x-axis) increased.

Figure S3. Distribution of each libraries reads in different regions of reference genome.

Figure S4. Distribution of total mapped reads density in anser cygnoides chromosomes.

Figure S5. The Pearson’s correlation coefficients between two samples.

Figure S6. RPKM distribution of different genes in each sample, x-axis means sample names, y-axis means log10(RPKM).

Figure S7. RPKM density distribution of different genes in each sample. x-axis represent log10(RPKM), y-axis represent gene density.

Table S1. Details of the primers used for quantitative real-time PCR analysis.

Table S2. Details of the genes differentially expressed between two sample.

Table S3. Significantly enriched GO terms in DEGs.

Table S4. Pathway enrichment analysis of DEGs.

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