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Research Article

Filling reference libraries with diatom environmental sequences: strengths and weaknesses

Hristina Kochoska1 UMR Carrtel, INRAE, Université Savoie-Mont Blanc, Thonon les Bains cedex, France;2 Faculty of Natural Sciences and Mathematics, University Ss Cyril and Methodious, Skopje, R. North Macedonia;3 Department of Ecology, Faculty of Science, Charles University, Prague, Czech RepublicCorrespondence[email protected]

https://orcid.org/0000-0001-5245-036X View further author information

Cécile Chardon1 UMR Carrtel, INRAE, Université Savoie-Mont Blanc, Thonon les Bains cedex, FranceView further author information

Teofana Chonova1 UMR Carrtel, INRAE, Université Savoie-Mont Blanc, Thonon les Bains cedex, France;4 Eawag: Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, Switzerland

https://orcid.org/0000-0002-6148-0947 View further author information

François Keck4 Eawag: Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, Switzerland

https://orcid.org/0000-0002-3323-4167 View further author information

Lenaïg Kermarrec5 Ecoma, Rivesaltes, FranceView further author information

Floriane Larras6 INRAE, Directorate for Collective Scientific Assessment, Foresight and Advanced Studies, Paris, France

https://orcid.org/0000-0002-8345-8716 View further author information

Estelle Lefrancois7 Eco in’Eau, Montferrier sur Lez, FranceView further author information

Sinziana F. Rivera1 UMR Carrtel, INRAE, Université Savoie-Mont Blanc, Thonon les Bains cedex, France

https://orcid.org/0000-0002-0812-9031 View further author information

Kálmán Tapolczai8 Balaton Limnological Research Institute, Eötvös Loránd Research Network (ELKH), Tihany, Hungary

https://orcid.org/0000-0003-1453-767X View further author information

Valentin Vasselon9 Scimabio Interface, Thonon-les-Bains, France

https://orcid.org/0000-0001-5038-7918 View further author information

Zlatko Levkov2 Faculty of Natural Sciences and Mathematics, University Ss Cyril and Methodious, Skopje, R. North Macedonia

https://orcid.org/0000-0002-1184-2356 View further author information

Frédéric Rimet1 UMR Carrtel, INRAE, Université Savoie-Mont Blanc, Thonon les Bains cedex, France

https://orcid.org/0000-0002-5514-869X View further author information

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Supplemental material

Supplementary data 4. Spearman’s correlation between frustule counts of suspected species and percentage of reads of ASVs. (Correlation coefficient: bottom left of the table, p-value: upper right of the table.)

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Supplementary data 3. SEM micrographs of Epithemia boucheziae sp. nov. Figs 1–2. External valve view. Figs. 3–4 Internal valve view. Scale bars = 10 μm.

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Supplementary data 2. LM micrographs of Epithemia boucheziae sp. nov. Figs 1–10. Valve view. Figs 11–13c. Girdle view, from river Rivière Bras David in Guadeloupe. Scale bar = 10 μm.

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Supplementary data 1. LMmicrographs of Nupela boucheziae sp. nov. Figs 1–23. Valves with raphe and Figs. 1–19. Valves without raphe, from a site called Blanche-Pont de l’Alma in Martinique. Scale bar = 10 μm.

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Filling reference libraries with diatom environmental sequences: strengths and weaknesses

Supplementary data 4. Spearman’s correlation between frustule counts of suspected species and percentage of reads of ASVs. (Correlation coefficient: bottom left of the table, p-value: upper right of the table.)

Supplementary data 3. SEM micrographs of Epithemia boucheziae sp. nov. Figs 1–2. External valve view. Figs. 3–4 Internal valve view. Scale bars = 10 μm.

Supplementary data 2. LM micrographs of Epithemia boucheziae sp. nov. Figs 1–10. Valve view. Figs 11–13c. Girdle view, from river Rivière Bras David in Guadeloupe. Scale bar = 10 μm.

Supplementary data 1. LMmicrographs of Nupela boucheziae sp. nov. Figs 1–23. Valves with raphe and Figs. 1–19. Valves without raphe, from a site called Blanche-Pont de l’Alma in Martinique. Scale bar = 10 μm.

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Filling reference libraries with diatom environmental sequences: strengths and weaknesses

Supplementary data 4. Spearman’s correlation between frustule counts of suspected species and percentage of reads of ASVs. (Correlation coefficient: bottom left of the table, p-value: upper right of the table.)

Supplementary data 3. SEM micrographs of Epithemia boucheziae sp. nov. Figs 1–2. External valve view. Figs. 3–4 Internal valve view. Scale bars = 10 μm.

Supplementary data 2. LM micrographs of Epithemia boucheziae sp. nov. Figs 1–10. Valve view. Figs 11–13c. Girdle view, from river Rivière Bras David in Guadeloupe. Scale bar = 10 μm.

Supplementary data 1. LMmicrographs of Nupela boucheziae sp. nov. Figs 1–23. Valves with raphe and Figs. 1–19. Valves without raphe, from a site called Blanche-Pont de l’Alma in Martinique. Scale bar = 10 μm.

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