Supplemental material
Brief Report - Basic Science
Targeted interplay between bacterial pathogens and host autophagy
, , , , , , , , , 
& show all
Tamas KorcsmarosEarlham Institute, Norwich Research Park, Norwich, UK;Gut Health and Microbes Programme, Quadram Institute, Norwich Research Park, Norwich, UKCorrespondence[email protected]
https://orcid.org/0000-0003-1717-996XView further author information
https://orcid.org/0000-0003-1717-996XView further author information & show allRelated Research Data
Dissemination of invasive Salmonella via bacterial-induced extrusion of mucosal epithelia
Source:
Proceedings of the National Academy of Sciences
A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1
Source:
Springer Nature
Bacterial autophagy: restriction or promotion of bacterial replication?
Source:
Elsevier BV
Cloning, expression and characterization of a 46.5-kDa metallopeptidase from Bacillus halodurans H4 sharing properties with the pitrilysin family
Source:
Elsevier BV
Computational prediction of host-pathogen protein–protein interactions
Source:
Oxford University Press (OUP)
Uncovering New Pathogen–Host Protein–Protein Interactions by Pairwise Structure Similarity
Source:
Public Library of Science (PLoS)
Clumping factor A ofStaphylococcus aureusinhibits phagocytosis by human polymorphonuclear leucocytes
Source:
Oxford University Press (OUP)
Outer membrane vesicles secreted by pathogenic and nonpathogenic Bacteroides fragilis represent different metabolic activities
Source:
Springer Nature
Classification of intrinsically disordered regions and proteins.
Source:
American Chemical Society (ACS)
Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant
Source:
Elsevier BV
Host and bacterial factors that regulate LC3 recruitment to Listeria monocytogenes during the early stages of macrophage infection
Source:
Landes Bioscience
TRIM Proteins Regulate Autophagy and Can Target Autophagic Substrates by Direct Recognition
Source:
Elsevier Inc.
Proteomic analysis of outer membrane vesicles from the probiotic strainEscherichia coliNissle 1917
Source:
Wiley-Blackwell
Salmonella Populations inside Host Cells
Source:
Frontiers Media SA
Intestinal Anti-inflammatory Effects of Outer Membrane Vesicles from Escherichia coli Nissle 1917 in DSS-Experimental Colitis in Mice
Source:
Frontiers Media SA
Autophagy and bacterial infection: an evolving arms race
Source:
Elsevier BV
Bacteria–autophagy interplay: a battle for survival
Source:
Springer Nature
PSORTdb: expanding the bacteria and archaea protein subcellular localization database to better reflect diversity in cell envelope structures
Source:
Oxford University Press (OUP)
Bulbar impairment score predicts noninvasive volume-cycled ventilation failure during an acute lower respiratory tract infection in ALS
Source:
Elsevier BV
Mining the TRAF6/p62 interactome for a selective ubiquitination motif
Source:
Springer Nature
Global Analysis of Host and Bacterial Ubiquitinome in Response to Salmonella Typhimurium Infection
Source:
Elsevier BV
Interaction networks for systems biology
Source:
Wiley
Reconstruction of the temporal signaling network in Salmonella-infected human cells
Source:
Frontiers Media SA
Structural basis for recognition of autophagic receptor NDP52 by the sugar receptor galectin-8
Source:
Springer Nature
A Role for NBR1 in Autophagosomal Degradation of Ubiquitinated Substrates
Source:
Elsevier BV
A web resource for prediction of Atg8-family interacting proteins
Source:
Informa UK Limited
Identification and Characterization of Falcilysin, a Metallopeptidase Involved in Hemoglobin Catabolism within the Malaria ParasitePlasmodium falciparum
Source:
American Society for Biochemistry & Molecular Biology (ASBMB)
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
Source:
Elsevier BV
Quantitative assessment of cytosolic Salmonella in epithelial cells.
Source:
Public Library of Science (PLoS)
Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis
Source:
Springer Science and Business Media LLC
DOMINE: a database of protein domain interactions
Source:
Oxford University Press (OUP)
Identification and Characterization of Outer Membrane Vesicle-Associated Proteins in Salmonella enterica Serovar Typhimurium
Source:
American Society for Microbiology
Complex regulation of autophagy in cancer – Integrated approaches to discover the networks that hold a double-edged sword
Source:
Elsevier BV
UniProt: the universal protein knowledgebase
Source:
Oxford University Press (OUP)
p62/SQSTM1 Binds Directly to Atg8/LC3 to Facilitate Degradation of Ubiquitinated Protein Aggregates by Autophagy
Source:
American Society for Biochemistry & Molecular Biology (ASBMB)
Prediction of Protein Binding Regions in Disordered Proteins
Source:
Public Library of Science (PLoS)
iLIR database: A web resource for LIR motif-containing proteins in eukaryotes
Source:
Informa UK Limited
UniProt: the universal protein knowledgebase
Source:
Oxford University Press (OUP)
Ubiquitin-Dependent And Independent Signals In Selective Autophagy.
Source:
Elsevier BV
A Structural Model of the Staphylococcus aureus ClfA–Fibrinogen Interaction Opens New Avenues for the Design of Anti-Staphylococcal Therapeutics
Source:
Public Library of Science (PLoS)
Identification of Residues in theStaphylococcus aureusFibrinogen-binding MSCRAMM Clumping Factor A (ClfA) That Are Important for Ligand Binding
Source:
American Society for Biochemistry & Molecular Biology (ASBMB)
UniProt: the universal protein knowledgebase
Source:
Oxford University Press (OUP)
Autophagy in immunity and inflammation
Source:
Springer Science and Business Media LLC
ESX-1 dependent impairment of autophagic flux by Mycobacterium tuberculosis in human dendritic cells
Source:
Landes Bioscience
LC3C, Bound Selectively by a Noncanonical LIR Motif in NDP52, Is Required for Antibacterial Autophagy
Source:
Elsevier BV
Coxiella burnetii type IV secretion-dependent recruitment of macrophage autophagosomes.
Source:
American Society for Microbiology
Teaching the bioinformatics of signaling networks: an integrated approach to facilitate multi-disciplinary learning
Source:
Oxford University Press (OUP)
Structure biology of selective autophagy receptors
Source:
Korean Society for Biochemistry and Molecular Biology - BMB Reports
InterProScan 5: genome-scale protein function classification
Source:
Oxford University Press (OUP)
Proteomic Characterization of the Whole Secretome of Legionella pneumophila and Functional Analysis of Outer Membrane Vesicles
Source:
American Society for Microbiology
The Autophagy Receptor TAX1BP1 and the Molecular Motor Myosin VI Are Required for Clearance of Salmonella Typhimurium by Autophagy
Source:
Public Library of Science (PLoS)
Outer Membrane Vesicles from the Probiotic Escherichia coli Nissle 1917 and the Commensal ECOR12 Enter Intestinal Epithelial Cells via Clathrin-Dependent Endocytosis and Elicit Differential Effects on DNA Damage
Source:
Public Library of Science (PLoS)
Orientia tsutsugamushiin Lung of Patient with Acute Respiratory Distress Syndrome, France, 2013
Source:
Centers for Disease Control and Prevention (CDC)
Outer Membrane Vesicles (OMVs) of Gram-negative Bacteria: A Perspective Update
Source:
Frontiers Media SA
Antibiotic resistance breakers: can repurposed drugs fill the antibiotic discovery void?
Source:
Springer Nature
Selective autophagy of non-ubiquitylated targets in plants: looking for cognate receptor/adaptor proteins
Source:
Frontiers Media SA
Signatures of Pleiotropy, Economy and Convergent Evolution in a Domain-Resolved Map of Human–Virus Protein–Protein Interaction Networks
Source:
Public Library of Science (PLoS)
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products.
Source:
Proceedings of the National Academy of Sciences of the United States of America
Linking provided by
