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Emerging Microbes & Infections Volume 11, 2022 - Issue 1
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Research Article

Evolutionary and genomic insights into the long-term colonization of Shigella flexneri in animals

Junrong Lianga State Key laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, People’s Republic of ChinaView further author information
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Zhen Zhub College of Life Science and Food Engineering, Hebei University of Engineering, Handan, People’s Republic of ChinaView further author information
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Ruiting Lanc School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, AustraliaView further author information
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Jing Mengd Center for Systems Medicine, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China;e Suzhou Institute of Systems Medicine, Suzhou, People’s Republic of ChinaView further author information
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Bram Vranckenf Department of Microbiology and Immunology, Rega Institute, Laboratory of Evolutionary and Computational Virology, KU Leuven, Leuven, BelgiumORCID Iconhttps://orcid.org/0000-0001-6547-5283View further author information
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Shan Lua State Key laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, People’s Republic of China;g Scientific research department, Shanghai Public Health Clinical Center, Fudan University, Shanghai, People’s Republic of China;h Research Units of Discovery of Unknown Bacteria and Function, Chinese Academy of Medical Sciences, Beijing, People’s Republic of ChinaView further author information
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Dong Jina State Key laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, People’s Republic of China;g Scientific research department, Shanghai Public Health Clinical Center, Fudan University, Shanghai, People’s Republic of China;h Research Units of Discovery of Unknown Bacteria and Function, Chinese Academy of Medical Sciences, Beijing, People’s Republic of ChinaView further author information
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Jing Yanga State Key laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, People’s Republic of China;g Scientific research department, Shanghai Public Health Clinical Center, Fudan University, Shanghai, People’s Republic of China;h Research Units of Discovery of Unknown Bacteria and Function, Chinese Academy of Medical Sciences, Beijing, People’s Republic of ChinaView further author information
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Jianping Wanga State Key laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, People’s Republic of ChinaView further author information
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Tian Qina State Key laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, People’s Republic of ChinaView further author information
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Ji Pua State Key laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, People’s Republic of ChinaView further author information
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Li Zhangd Center for Systems Medicine, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China;e Suzhou Institute of Systems Medicine, Suzhou, People’s Republic of ChinaView further author information
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Kui Dongi Shanxi Eye Hospital, Taiyuan, People’s Republic of ChinaView further author information
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Mingchao Xua State Key laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, People’s Republic of ChinaView further author information
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Huaiyu Tianj State Key Laboratory of Remote Sensing Science, Center for Global Change and Public Health, College of Global Change and Earth System Science, Beijing Normal University, Beijing, People’s Republic of ChinaView further author information
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Taijiao Jiangd Center for Systems Medicine, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China;e Suzhou Institute of Systems Medicine, Suzhou, People’s Republic of China;k Guangzhou Laboratory, Guangzhou, People’s Republic of ChinaCorrespondence[email protected]
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Jianguo Xul Research Institute of Public Heath, Nankai University, Tianjin, People’s Republic of China;h Research Units of Discovery of Unknown Bacteria and Function, Chinese Academy of Medical Sciences, Beijing, People’s Republic of China;a State Key laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, People’s Republic of ChinaCorrespondence[email protected]
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Pages 2069-2079 | Received 12 Apr 2022, Accepted 31 Jul 2022, Published online: 31 Aug 2022

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Evolutionary and genomic insights into the long-term colonization of Shigella flexneri in animals
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