Journal of Biomolecular Structure and Dynamics, Volume 15, Issue 2 (1997)

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Journal of Biomolecular Structure and Dynamics, Volume 15, Issue 2 (1997)

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Editorials

Editorial
Editorial Advisory Board
Pages: iii-x
Published online: 21 May 2012
First Page PreviewforEditorial Advisory Board | PDF (468.1 KB)
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Original Articles

Article
Use of Chemically Modified Nucleotides to Determine a 62-Nucleotide RNA Crystal Structure: A Survey of Phosphorothioates, Br, Pt and Hg
Carl C. Correli, Betty Freeborn, Peter B. Moore & Thomas A. Steitz
Pages: 165-172
Published online: 21 May 2012
AbstractforUse of Chemically Modified Nucleotides to Determine a 62-Nucleotide RNA Crystal Structure: A Survey of Phosphorothioates, Br, Pt and Hg | References | PDF (1.5 MB)
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A Hypothesis

Article
Correlation of Hydrophobicity and Packing in A-DNA Oligonucleotides
M. Sundaralingam & R. Biswas
Pages: 173-176
Published online: 21 May 2012
AbstractforCorrelation of Hydrophobicity and Packing in A-DNA Oligonucleotides | References | PDF (884.6 KB)
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Original Articles

Article
The SRY Cantilever Motif Discriminates Between Sequence- and Structure-Specific DNA Recognition: Alanine Mutagenesis of an HMG Box
Michael A. Weiss, Etsuji Ukiyama & Chih-Yen King
Pages: 177-184
Published online: 21 May 2012
AbstractforThe SRY Cantilever Motif Discriminates Between Sequence- and Structure-Specific DNA Recognition: Alanine Mutagenesis of an HMG Box | Full Text | References | PDF (2.3 MB)
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Article
Structure of an Anti-HIV-1 Hammerhead Ribozyme Complex with a 17-mer DNA Substrate Analog of HIV-1 gag RNA and a Mechanism for the Cleavage Reaction: 750 MHz NMR and Computer Experiments
Rajendra P. Ojha, Madan M. Dhingra, Mukti H. Sarma, Yash P. Myer, Robert F. Setlik, Masayuki Shibata, A. Latif. Kazim, Rick L. Ornstein, Robert Rein, Christopher J. Turner & Ramaswamy H. Sarma
Pages: 185-215
Published online: 21 May 2012
AbstractforStructure of an Anti-HIV-1 Hammerhead Ribozyme Complex with a 17-mer DNA Substrate Analog of HIV-1 gag RNA and a Mechanism for the Cleavage Reaction: 750 MHz NMR and Computer Experiments | References | PDF (10.8 MB)
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Article
Variability Analysis of HIV-1 gp120 V3 Region: I. Point Estimators for the Amino Acid Distribution Characteristics
Michael Yu. Shchelkanov, Alex N. Yudin, Alex V. Antonov, Nicole S. Starikov, Alexander A. Vedenov & Edward V. Karamov
Pages: 217-229
Published online: 21 May 2012
AbstractforVariability Analysis of HIV-1 gp120 V3 Region: I. Point Estimators for the Amino Acid Distribution Characteristics | References | PDF (1.5 MB)
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Article
Variability Analysis of HIV-1 gp120 V3 Region: II. Hierarchy of Taxons
Michael Yu Shchelkanov, Alex N. Yudin, Alex V. Antonov, Lev A. Soinov, Vadim V. Zalunin, Alexander A. Vedenov & Edward V. Karamov
Pages: 231-241
Published online: 21 May 2012
AbstractforVariability Analysis of HIV-1 gp120 V3 Region: II. Hierarchy of Taxons | References | PDF (635.8 KB)
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Article
Single-Strand-Preferring RNases Degrade Double-Stranded RNAs by Destabilizing its Secondary Structure
G. Yakovlev, G. P. Moiseyev, S. Sorrentino, R. De Prisco & M. Libonati
Pages: 243-250
Published online: 21 May 2012
AbstractforSingle-Strand-Preferring RNases Degrade Double-Stranded RNAs by Destabilizing its Secondary Structure | References | PDF (574 KB)
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Article
Thermodynamic Cycle Between DNA and RNA Constituents for Conformation of the Sugar Ring from Nuclear Magnetic Resonance Study
Mieczyslaw Remin
Pages: 251-264
Published online: 21 May 2012
AbstractforThermodynamic Cycle Between DNA and RNA Constituents for Conformation of the Sugar Ring from Nuclear Magnetic Resonance Study | References | PDF (805.3 KB)
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Article
Curvature and Sequence Analysis of Eukaryotic Promoters
Tanja Schätz & Joörg Langowski
Pages: 265-275
Published online: 21 May 2012
AbstractforCurvature and Sequence Analysis of Eukaryotic Promoters | References | PDF (639.4 KB)
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Article
An Improved Method for the Rapid Assessment of DNA Bending by Small Molecules
Aaron A. Salzberg & Peter C. Dedon
Pages: 277-284
Published online: 21 May 2012
AbstractforAn Improved Method for the Rapid Assessment of DNA Bending by Small Molecules | References | PDF (845.4 KB)
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Article
Structure of Poly d(AI)·Poly d(CT) in Two Different Packing Arrangements
Rengaswami Chandrasekaran, Akella Radha & Hye-Shin Park
Pages: 285-305
Published online: 21 May 2012
AbstractforStructure of Poly d(AI)·Poly d(CT) in Two Different Packing Arrangements | References | PDF (1.6 MB)
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Article
Structural Studies by High-Field NMR Spectroscopy of a Binary-Addressed Complementary Oligonucleotide System Juxtaposing Pyrene and Perfluoro-Azide Units
Elena V. Bichenkova, Debora S. Marks, Sergei G. Lokhov, Michail I. Dobrikov, Valentin V. Vlassov & Kenneth T. Douglas
Pages: 307-320
Published online: 21 May 2012
AbstractforStructural Studies by High-Field NMR Spectroscopy of a Binary-Addressed Complementary Oligonucleotide System Juxtaposing Pyrene and Perfluoro-Azide Units | References | PDF (904.5 KB)
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Article
Dynamic Bis-Intercalation of a Homodimeric Thiazole Orange Dye in DNA: Evidence of Intercalator Creeping
Jef Faridi, Katrine E. Nielsen, Paul C. Stein & Jens Peter Jacobsen
Pages: 321-332
Published online: 21 May 2012
AbstractforDynamic Bis-Intercalation of a Homodimeric Thiazole Orange Dye in DNA: Evidence of Intercalator Creeping | References | PDF (710.3 KB)
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Article
Sequence-Independent Recombination Triple Helices: A Molecular Dynamics Study
M. Ravi Kiran & Manju Bansal
Pages: 333-345
Published online: 21 May 2012
AbstractforSequence-Independent Recombination Triple Helices: A Molecular Dynamics Study | References | PDF (865.5 KB)
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Article
Protein-Nucleic Acid Recognition: Simulation of Base and “Model” Amino Acids Complexes in DMSO by the Monte Carlo Method
Victor I. Danilov, Oieg N. Slyusarchuk, Valery I. Poltev & James L. Alderfer
Pages: 347-355
Published online: 21 May 2012
AbstractforProtein-Nucleic Acid Recognition: Simulation of Base and “Model” Amino Acids Complexes in DMSO by the Monte Carlo Method | References | PDF (625.8 KB)
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Article
Search for Rigid Sub Domains in DNA from Molecular Dynamics Simulations
F. Gaudin, G. Lancelot & D. Genest
Pages: 357-367
Published online: 21 May 2012
AbstractforSearch for Rigid Sub Domains in DNA from Molecular Dynamics Simulations | References | PDF (776.3 KB)
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Article
Cooperative Interactions of the Oligodeoxyribonucleotides on the Complementary Template. The Influence of Chemical Groups and Mismatched Nucleotides at the 5′- and 3′-ends of Oligonucleotides on the Parameters of Cooperativity
Abdussalam Adeenah-Zadah, Dmitri G. Knorre & Olga S. Fedorova
Pages: 369-380
Published online: 21 May 2012
AbstractforCooperative Interactions of the Oligodeoxyribonucleotides on the Complementary Template. The Influence of Chemical Groups and Mismatched Nucleotides at the 5′- and 3′-ends of Oligonucleotides on the Parameters of Cooperativity | References | PDF (791.3 KB)
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Article
Dielectric Relaxation, Molecular Motion and Interprotein Interactions in Myoglobin Solution
I. V. Ermolina, I. N. Ivoylov & V. D. Fedotov
Pages: 381-392
Published online: 21 May 2012
AbstractforDielectric Relaxation, Molecular Motion and Interprotein Interactions in Myoglobin Solution | References | PDF (898.3 KB)
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Article
Modeling of in vivo Proteolytic Degradation of Hemoglobin
Alexei N. Nekrasov, Elena E. Lexikova & Andrey A. Karelin
Pages: 393-399
Published online: 21 May 2012
AbstractforModeling of in vivo Proteolytic Degradation of Hemoglobin | References | PDF (779.4 KB)
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Article
Aromatic-Aromatic Ring Interaction Revisited with Model Compounds of Wilcox
Tan Ren, Yonghao Jin, Kwang S. Kim & Dong H. Kim
Pages: 401-405
Published online: 21 May 2012
AbstractforAromatic-Aromatic Ring Interaction Revisited with Model Compounds of Wilcox | References | PDF (341.3 KB)
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