Gut Microbes, Volume 11, Issue 3 (2020)

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Gut Microbes, Volume 11, Issue 3 (2020)

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Editorial

Editorial
Gut microbes effects on host metabolic alterations in health and disease
Suzana D. Savkovic
Pages: 249-252
Published online: 16 Jun 2020
First Page PreviewforGut microbes effects on host metabolic alterations in health and disease | Full Text | References | PDF (319.1 KB) | EPUB
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Review

Considering gut microbiota in treatment of type 2 diabetes mellitus
Aneseh Adeshirlarijaney & Andrew T. Gewirtz
Pages: 253-264
Published online: 31 Jan 2020
AbstractforConsidering gut microbiota in treatment of type 2 diabetes mellitus | Full Text | References | PDF (1,022.5 KB) | EPUB
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Research Paper

Article
Intestinal and hepatic microbiota changes associated with chronic ethanol administration in mice
Sena Bluemel, Lirui Wang, Claire Kuelbs, Kelvin Moncera, Manolito Torralba, Harinder Singh, Derrick E. Fouts & Bernd Schnabl
Pages: 265-275
Published online: 14 Apr 2019
AbstractforIntestinal and hepatic microbiota changes associated with chronic ethanol administration in mice | Full Text | References | PDF (3.5 MB) | EPUB
  • 2189 Views
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Review

Fatty acid metabolism in the host and commensal bacteria for the control of intestinal immune responses and diseases
Koji Hosomi, Hiroshi Kiyono & Jun Kunisawa
Pages: 276-284
Published online: 23 May 2019
AbstractforFatty acid metabolism in the host and commensal bacteria for the control of intestinal immune responses and diseases | Full Text | References | PDF (923.5 KB) | EPUB
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Gut bacteria signaling to mitochondria in intestinal inflammation and cancer
Dakota N. Jackson & Arianne L. Theiss
Pages: 285-304
Published online: 26 Mar 2019
AbstractforGut bacteria signaling to mitochondria in intestinal inflammation and cancer | Full Text | References | PDF (1.7 MB) | EPUB
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Commentary and Views

Article Commentary
Detection of mixed-strain infections by FACS and ultra-low input genome sequencing
Mária Džunková, Andrés Moya, Xinhua Chen, Ciaran Kelly & Giuseppe D’Auria
Pages: 305-309
Published online: 05 Oct 2018
AbstractforDetection of mixed-strain infections by FACS and ultra-low input genome sequencing | Full Text | References | PDF (992.5 KB) | EPUB
  • 1190 Views
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Review

Interactions between host and gut microbiota in domestic pigs: a review
Yadnyavalkya Patil, Ravi Gooneratne & Xiang-Hong Ju
Pages: 310-334
Published online: 24 Nov 2019
AbstractforInteractions between host and gut microbiota in domestic pigs: a review | Full Text | References | PDF (2.9 MB) | EPUB
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Probiotic bacteria as modulators of cellular senescence: emerging concepts and opportunities
Rohit Sharma & Yogendra Padwad
Pages: 335-349
Published online: 10 Dec 2019
AbstractforProbiotic bacteria as modulators of cellular senescence: emerging concepts and opportunities | Full Text | References | PDF (1.7 MB) | EPUB
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Research Paper

Article
Bacterial TLR4 and NOD2 signaling linked to reduced mitochondrial energy function in active inflammatory bowel disease
Emmanuelle Ruiz, Harrison M. Penrose, Sandra Heller, Hani Nakhoul, Melody Baddoo, Erik F. Flemington, Emad Kandil & Suzana D. Savkovic
Pages: 350-363
Published online: 07 May 2019
AbstractforBacterial TLR4 and NOD2 signaling linked to reduced mitochondrial energy function in active inflammatory bowel disease | Full Text | References | PDF (2.5 MB) | EPUB
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Article
Adaptation of adherent-invasive E. coli to gut environment: Impact on flagellum expression and bacterial colonization ability
Gwladys Sevrin, Sébastien Massier, Benoit Chassaing, Allison Agus, Julien Delmas, Jérémy Denizot, Elisabeth Billard & Nicolas Barnich
Pages: 364-380
Published online: 01 Mar 2018
AbstractforAdaptation of adherent-invasive E. coli to gut environment: Impact on flagellum expression and bacterial colonization ability | Full Text | References | PDF (851.1 KB) | EPUB
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Research Paper/Report

Article
The ‘in vivo lifestyle’ of bile acid 7α-dehydroxylating bacteria: comparative genomics, metatranscriptomic, and bile acid metabolomics analysis of a defined microbial community in gnotobiotic mice
Jason M. Ridlon, Saravanan Devendran, João Mp Alves, Heidi Doden, Patricia G. Wolf, Gabriel V. Pereira, Lindsey Ly, Alyssa Volland, Hajime Takei, Hiroshi Nittono, Tsuyoshi Murai, Takao Kurosawa, George E. Chlipala, Stefan J. Green, Alvaro G. Hernandez, Christopher J. Fields, Christy L. Wright, Genta Kakiyama, Isaac Cann, Purna Kashyap, Vance McCracken & H. Rex Gaskins
Pages: 381-404
Published online: 09 Jun 2019
AbstractforThe ‘in vivo lifestyle’ of bile acid 7α-dehydroxylating bacteria: comparative genomics, metatranscriptomic, and bile acid metabolomics analysis of a defined microbial community in gnotobiotic mice | Full Text | References | PDF (5.7 MB) | EPUB | Supplemental
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Article
Dynamic immunoglobulin responses to gut bacteria during inflammatory bowel disease
Sunaina Rengarajan, Emily E. Vivio, Miles Parkes, Daniel A. Peterson, Elisha D.O. Roberson, Rodney D. Newberry, Matthew A. Ciorba & Chyi-Song Hsieh
Pages: 405-420
Published online: 16 Jun 2019
AbstractforDynamic immunoglobulin responses to gut bacteria during inflammatory bowel disease | Full Text | References | PDF (4.5 MB) | EPUB | Supplemental
  • 3237 Views
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Article
Lipopolysaccharides modulate intestinal epithelial permeability and inflammation in a species-specific manner
Matthew Stephens & Pierre-Yves von der Weid
Pages: 421-432
Published online: 16 Jun 2019
AbstractforLipopolysaccharides modulate intestinal epithelial permeability and inflammation in a species-specific manner | Full Text | References | PDF (2.7 MB) | EPUB
  • 8017 Views
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Article
Prevention of enteric bacterial infections and modulation of gut microbiota with conjugated linoleic acids producing Lactobacillus in mice
Mengfei Peng, Zajeba Tabashsum, Puja Patel, Cassandra Bernhardt, Chitrine Biswas, Jianghong Meng & Debabrata Biswas
Pages: 433-452
Published online: 14 Aug 2019
AbstractforPrevention of enteric bacterial infections and modulation of gut microbiota with conjugated linoleic acids producing Lactobacillus in mice | Full Text | References | PDF (5.2 MB) | EPUB
  • 2558 Views
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Article
Analysis of gut microbiome, nutrition and immune status in autism spectrum disorder: a case-control study in Ecuador
María Fernanda Zurita, Paúl A. Cárdenas, María Elena Sandoval, María Caridad Peña, Marco Fornasini, Nancy Flores, Marcia H. Monaco, Kirsten Berding, Sharon M. Donovan, Thomas Kuntz, Jack A Gilbert & Manuel E. Baldeón
Pages: 453-464
Published online: 18 Sep 2019
AbstractforAnalysis of gut microbiome, nutrition and immune status in autism spectrum disorder: a case-control study in Ecuador | Full Text | References | PDF (2.2 MB) | EPUB
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Article
Additional Candida albicans administration enhances the severity of dextran sulfate solution induced colitis mouse model through leaky gut-enhanced systemic inflammation and gut-dysbiosis but attenuated by Lactobacillus rhamnosus L34
Wimonrat Panpetch, Pratsanee Hiengrach, Sumanee Nilgate, Somying Tumwasorn, Naraporn Somboonna, Alisa Wilantho, Piraya Chatthanathon, Piyapan Prueksapanich & Asada Leelahavanichkul
Pages: 465-480
Published online: 18 Sep 2019
AbstractforAdditional Candida albicans administration enhances the severity of dextran sulfate solution induced colitis mouse model through leaky gut-enhanced systemic inflammation and gut-dysbiosis but attenuated by Lactobacillus rhamnosus L34 | Full Text | References | PDF (15.5 MB) | EPUB | Supplemental
  • 6392 Views
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Article
Bile salt metabolism is not the only factor contributing to Clostridioides (Clostridium) difficile disease severity in the murine model of disease
Caitlin A. Jukes, Umer Zeeshan Ijaz, Anthony Buckley, Janice Spencer, June Irvine, Denise Candlish, Jia V. Li, Julian R. Marchesi & Gillian Douce
Pages: 481-496
Published online: 02 Dec 2019
AbstractforBile salt metabolism is not the only factor contributing to Clostridioides (Clostridium) difficile disease severity in the murine model of disease | Full Text | References | PDF (4.3 MB) | EPUB | Supplemental
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Article
Worm expulsion is independent of alterations in composition of the colonic bacteria that occur during experimental Hymenolepis diminuta-infection in mice
Adam Shute, Arthur Wang, Timothy S. Jayme, Marc Strous, Kathy D. McCoy, Andre G. Buret & Derek M. McKay
Pages: 497-510
Published online: 13 Jan 2020
AbstractforWorm expulsion is independent of alterations in composition of the colonic bacteria that occur during experimental Hymenolepis diminuta-infection in mice | Full Text | References | PDF (2.3 MB) | EPUB | Supplemental
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Article
Fusobacterium nucleatum promotes colorectal cancer metastasis by modulating KRT7-AS/KRT7
Shujie Chen, Tingting Su, Ying Zhang, Allen Lee, Jiamin He, Qiwei Ge, Lan Wang, Jianmin Si, Wei Zhuo & Liangjing Wang
Pages: 511-525
Published online: 07 Jan 2020
AbstractforFusobacterium nucleatum promotes colorectal cancer metastasis by modulating KRT7-AS/KRT7 | Full Text | References | PDF (6.4 MB) | EPUB | Supplemental
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Article
The YrbE phospholipid transporter of Salmonella enterica serovar Typhi regulates the expression of flagellin and influences motility, adhesion and induction of epithelial inflammatory responses
Smriti Verma, Rachel A. Prescott, Laura Ingano, Kourtney P. Nickerson, Emily Hill, Christina S. Faherty, Alessio Fasano, Stefania Senger & Bobby J. Cherayil
Pages: 526-538
Published online: 12 Dec 2019
AbstractforThe YrbE phospholipid transporter of Salmonella enterica serovar Typhi regulates the expression of flagellin and influences motility, adhesion and induction of epithelial inflammatory responses | Full Text | References | PDF (3.5 MB) | EPUB | Supplemental
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Article
Altered gut microbiome composition in patients with Vogt-Koyanagi-Harada disease
Zi Ye, Chunyan Wu, Ni Zhang, Liping Du, Qingfeng Cao, Xinyue Huang, Jihong Tang, Qingfeng Wang, Fuzhen Li, Chunjiang Zhou, Qian Xu, Xiao Xiong, Aize Kijlstra, Nan Qin & Peizeng Yang
Pages: 539-555
Published online: 13 Jan 2020
AbstractforAltered gut microbiome composition in patients with Vogt-Koyanagi-Harada disease | Full Text | References | PDF (3.5 MB) | EPUB | Supplemental
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Article
Variants in genes of innate immunity, appetite control and energy metabolism are associated with host cardiometabolic health and gut microbiota composition
Esteban L. Ortega-Vega, Sandra J. Guzmán-Castañeda, Omer Campo, Eliana P. Velásquez-Mejía, Jacobo de la Cuesta-Zuluaga, Gabriel Bedoya & Juan S. Escobar
Pages: 556-568
Published online: 03 Jun 2019
AbstractforVariants in genes of innate immunity, appetite control and energy metabolism are associated with host cardiometabolic health and gut microbiota composition | Full Text | References | PDF (2 MB) | EPUB | Supplemental
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Research Article

Article
Lower gut microbiome diversity and higher abundance of proinflammatory genus Collinsella are associated with biopsy-proven nonalcoholic steatohepatitis
Stuart Astbury, Edmond Atallah, Amrita Vijay, Guruprasad P Aithal, Jane I Grove & Ana M Valdes
Pages: 569-580
Published online: 07 Nov 2019
AbstractforLower gut microbiome diversity and higher abundance of proinflammatory genus Collinsella are associated with biopsy-proven nonalcoholic steatohepatitis | Full Text | References | PDF (6.3 MB) | EPUB | Supplemental
  • 5229 Views
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Addendum

Addendum
“Good Fences Make Good Neighbors”: How does the Human Gut Microchip Unravel Mechanism of Intestinal Inflammation?
Woojung Shin, Landon A. Hackley & Hyun Jung Kim
Pages: 581-586
Published online: 14 Jun 2019
Abstractfor“Good Fences Make Good Neighbors”: How does the Human Gut Microchip Unravel Mechanism of Intestinal Inflammation? | Full Text | References | PDF (796.4 KB) | EPUB
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Addendum
Insights from pharmacokinetic models of host-microbiome drug metabolism
Maria Zimmermann-Kogadeeva, Michael Zimmermann & Andrew L. Goodman
Pages: 587-596
Published online: 29 Sep 2019
AbstractforInsights from pharmacokinetic models of host-microbiome drug metabolism | Full Text | References | PDF (1.7 MB) | EPUB
  • 5962 Views
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Addendum
Mechanisms of bacillary dysentery: lessons learnt from infant rabbits
Lauren K. Yum & Hervé Agaisse
Pages: 597-602
Published online: 01 Oct 2019
AbstractforMechanisms of bacillary dysentery: lessons learnt from infant rabbits | Full Text | References | PDF (1.5 MB) | EPUB
  • 2092 Views
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Addendum
Contribution of diet to gut microbiota and related host cardiometabolic health: diet-gut interaction in human health
Yi Wan, Jun Tang, Jiaomei Li, Jie Li, Jihong Yuan, Fenglei Wang & Duo Li
Pages: 603-609
Published online: 21 Jan 2020
AbstractforContribution of diet to gut microbiota and related host cardiometabolic health: diet-gut interaction in human health | Full Text | References | PDF (553.9 KB) | EPUB
  • 3668 Views
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Addendum
Can gut microbiota of men who have sex with men influence HIV transmission?
Sara L. Coleman, C. Preston Neff, Sam X. Li, Abigail J.S. Armstrong, Jennifer M. Schneider, Sharon Sen, Blair Fennimore, Thomas B. Campbell, Catherine A. Lozupone & Brent E. Palmer
Pages: 610-619
Published online: 10 Feb 2020
AbstractforCan gut microbiota of men who have sex with men influence HIV transmission? | Full Text | References | PDF (2 MB) | EPUB
  • 3729 Views
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Brief Report

Brief Report
Changes in gut microbial metagenomic pathways associated with clinical outcomes after the elimination of malabsorbed sugars in an IBS cohort
A. Mack, J.S. Bobardt, A. Haß, K.B. Nichols, R.M. Schmid & C.K. Stein-Thoeringer
Pages: 620-631
Published online: 06 Dec 2019
AbstractforChanges in gut microbial metagenomic pathways associated with clinical outcomes after the elimination of malabsorbed sugars in an IBS cohort | Full Text | References | PDF (1.5 MB) | EPUB | Supplemental
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Book Report

Book report
John Y. Kao
Page: 632
Published online: 10 Jan 2020
CitationforBook report | Full Text | PDF (111.5 KB) | EPUB
  • 934 Views
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