Gut Microbes, Volume 16, Issue 1 (2024)

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Gut Microbes, Volume 16, Issue 1 (2024)

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Volume 16, 2024 Vol 15, 2023 Vol 14, 2022 Vol 13, 2021 Vol 12, 2020 Vol 11, 2020 Vol 10, 2019 Vol 9, 2018 Vol 8, 2017 Vol 7, 2016 Vol 6, 2015 Vol 5, 2014 Vol 4, 2013 Vol 3, 2012 Vol 2, 2011 Vol 1, 2010
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Research Paper

Article
Human breastmilk-derived Bifidobacterium longum subsp. infantis CCFM1269 regulates bone formation by the GH/IGF axis through PI3K/AKT pathway
Mengfan Ding, Bowen Li, Haiqin Chen, Dong Liang, R. Paul Ross, Catherine Stanton, Jianxin Zhao, Wei Chen & Bo Yang
Article: 2290344
Published online: 20 Dec 2023
AbstractforHuman breastmilk-derived Bifidobacterium longum subsp. infantis CCFM1269 regulates bone formation by the GH/IGF axis through PI3K/AKT pathway | Full Text | References | PDF (11.6 MB) | EPUB | Supplemental
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Open Access
Article
Precocious infant fecal microbiome promotes enterocyte barrier dysfuction, altered neuroendocrine signaling and associates with increased childhood obesity risk
Germaine J. M. Yong, Cara E. Porsche, Alexandra R. Sitarik, Kei E. Fujimura, Kathryn McCauley, Dat T. Nguyen, Albert M. Levin, Kimberley J. Woodcroft, Dennis R. Ownby, Andrew G. Rundle, Christine C. Johnson, Andrea Cassidy-Bushrow & Susan V. Lynch
Article: 2290661
Published online: 20 Dec 2023
AbstractforPrecocious infant fecal microbiome promotes enterocyte barrier dysfuction, altered neuroendocrine signaling and associates with increased childhood obesity risk | Full Text | References | PDF (3 MB) | EPUB | Supplemental
  • 2815 Views
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Open Access
Article
Opioid-induced dysbiosis of maternal gut microbiota during gestation alters offspring gut microbiota and pain sensitivity
Yaa F. Abu, Salma Singh, Junyi Tao, Irina Chupikova, Praveen Singh, Jingjing Meng & Sabita Roy
Article: 2292224
Published online: 18 Dec 2023
AbstractforOpioid-induced dysbiosis of maternal gut microbiota during gestation alters offspring gut microbiota and pain sensitivity | Full Text | References | PDF (3.7 MB) | EPUB | Supplemental
  • 2717 Views
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Open Access
Article
Heterogeneous associations of gut microbiota with Crohn’s disease activity
Susanne Pinto, Elisa Benincà, Gianluca Galazzo, Daisy Jonkers, John Penders & Johannes A. Bogaards
Article: 2292239
Published online: 17 Dec 2023
AbstractforHeterogeneous associations of gut microbiota with Crohn’s disease activity | Full Text | References | PDF (8.1 MB) | EPUB | Supplemental
  • 1921 Views
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Open Access
Article
The impact of gut microbiome enterotypes on ulcerative colitis: identifying key bacterial species and revealing species co-occurrence networks using machine learning
Xuangao Wu, Ting Zhang, TianShun Zhang & Sunmin Park
Article: 2292254
Published online: 20 Dec 2023
AbstractforThe impact of gut microbiome enterotypes on ulcerative colitis: identifying key bacterial species and revealing species co-occurrence networks using machine learning | Full Text | References | PDF (4.3 MB) | EPUB | Supplemental
  • 2954 Views
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Open Access
Article
Cytolethal distending toxin B inoculation leads to distinct gut microtypes and IBS-D-like microRNA-mediated gene expression changes in a rodent model
Gabriela Leite, Juliana de Freitas Germano, Walter Morales, Stacy Weitsman, Gillian M Barlow, Gonzalo Parodi, Maya L Pimentel, Maria Jesus Villanueva-Millan, Maritza Sanchez, Sarah Ayyad, Ali Rezaie, Ruchi Mathur & Mark Pimentel
Article: 2293170
Published online: 18 Dec 2023
AbstractforCytolethal distending toxin B inoculation leads to distinct gut microtypes and IBS-D-like microRNA-mediated gene expression changes in a rodent model | Full Text | References | PDF (5.6 MB) | EPUB | Supplemental
  • 3191 Views
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Open Access
Article
Fusobacterium nucleatum promotes inflammatory and anti-apoptotic responses in colorectal cancer cells via ADP-heptose release and ALPK1/TIFA axis activation
Camille Martin-Gallausiaux, Laurène Salesse, Diego Garcia-Weber, Ludovica Marinelli, Fabienne Beguet-Crespel, Vincent Brochard, Camille Le Gléau, Alexandre Jamet, Joël Doré, Hervé M. Blottière, Cécile Arrieumerlou & Nicolas Lapaque
Article: 2295384
Published online: 21 Dec 2023
AbstractforFusobacterium nucleatum promotes inflammatory and anti-apoptotic responses in colorectal cancer cells via ADP-heptose release and ALPK1/TIFA axis activation | Full Text | References | PDF (2.5 MB) | EPUB | Supplemental
  • 2671 Views
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Open Access

Review

Review Article
The influence of the gut microbiome on ovarian aging
Feiling Huang, Ying Cao, Jinghui Liang, Ruiyi Tang, Si Wu, Peng Zhang & Rong Chen
Article: 2295394
Published online: 03 Jan 2024
AbstractforThe influence of the gut microbiome on ovarian aging | Full Text | References | PDF (1.8 MB) | EPUB
  • 4555 Views
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Open Access

Research Paper

Article
Daily skin-to-skin contact alters microbiota development in healthy full-term infants
Henrik Andreas Eckermann, Jennifer Meijer, Kelly Cooijmans, Leo Lahti & Carolina de Weerth
Article: 2295403
Published online: 10 Jan 2024
AbstractforDaily skin-to-skin contact alters microbiota development in healthy full-term infants | Full Text | References | PDF (4.5 MB) | EPUB | Supplemental
  • 3251 Views
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Open Access
Article
Gut microbiome responds to alteration in female sex hormone status and exacerbates metabolic dysfunction
Tzu-Wen L. Cross, Abigayle M. R. Simpson, Ching-Yen Lin, Natasha M. Hottmann, Aadra P. Bhatt, Samuel J. Pellock, Erik R. Nelson, Brett R. Loman, Matthew A. Wallig, Eugenio I. Vivas, Jan Suchodolski, Matthew R. Redinbo, Federico E. Rey & Kelly S. Swanson
Article: 2295429
Published online: 28 Dec 2023
AbstractforGut microbiome responds to alteration in female sex hormone status and exacerbates metabolic dysfunction | Full Text | References | PDF (2.5 MB) | EPUB | Supplemental
  • 4153 Views
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Open Access

Review

Review Article
Diets intervene osteoporosis via gut-bone axis
Yuan-Wei Zhang, Pei-Ran Song, Si-Cheng Wang, Han Liu, Zhong-Min Shi & Jia-Can Su
Article: 2295432
Published online: 04 Jan 2024
AbstractforDiets intervene osteoporosis via gut-bone axis | Full Text | References | PDF (3.6 MB) | EPUB
  • 3694 Views
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Open Access

Research Paper

Article
Microbiota and mucosal gene expression of fecal microbiota transplantation or placebo treated patients with chronic pouchitis
Anna K. Hartikainen, Imran Khan, Essi K. Karjalainen, Laura Renkonen-Sinisalo, Perttu Arkkila, Jonna Jalanka, Anna H. Lepistö & Reetta Satokari
Article: 2295445
Published online: 12 Jan 2024
AbstractforMicrobiota and mucosal gene expression of fecal microbiota transplantation or placebo treated patients with chronic pouchitis | Full Text | References | PDF (2.9 MB) | EPUB | Supplemental
  • 1457 Views
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Open Access
Article
Colicins and T6SS-based competition systems enhance enterotoxigenic E. coli (ETEC) competitiveness
Jonas Kjellin, Danna Lee, Hans Steinsland, Rachel Dwane, Oda Barth Vedoy, Kurt Hanevik & Sanna Koskiniemi
Article: 2295891
Published online: 27 Dec 2023
AbstractforColicins and T6SS-based competition systems enhance enterotoxigenic E. coli (ETEC) competitiveness | Full Text | References | PDF (1.1 MB) | EPUB | Supplemental
  • 1496 Views
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Open Access

Review

Review Article
Microbial collaborations and conflicts: unraveling interactions in the gut ecosystem
Shuang Wang, Lingyi Mu, Chong Yu, Yuting He, Xinliang Hu, Yanlei Jiao, Ziqiong Xu, Shaohui You, Shu-Lin Liu & Hongxia Bao
Article: 2296603
Published online: 27 Dec 2023
AbstractforMicrobial collaborations and conflicts: unraveling interactions in the gut ecosystem | Full Text | References | PDF (2.2 MB) | EPUB
  • 2295 Views
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Open Access

Research Paper

Article
Evaluation of gut microbiota predictive potential associated with phenotypic characteristics to identify multifactorial diseases
Danielle Cristina Fonseca, Ilanna Marques Gomes da Rocha, Bianca Depieri Balmant, Leticia Callado, Ana Paula Aguiar Prudêncio, Juliana Tepedino Martins Alves, Raquel Susana Torrinhas, Gabriel da Rocha Fernandes & Dan Linetzky Waitzberg
Article: 2297815
Published online: 18 Jan 2024
AbstractforEvaluation of gut microbiota predictive potential associated with phenotypic characteristics to identify multifactorial diseases | Full Text | References | PDF (2.6 MB) | EPUB | Supplemental
  • 2262 Views
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Open Access
Article
DSS treatment does not affect murine colonic microbiota in absence of the host
Jannike Lea Krause, Beatrice Engelmann, Stephanie Serena Schaepe, Ulrike Rolle-Kampczyk, Nico Jehmlich, Hyun-Dong Chang, Ulla Slanina, Maximillian Hoffman, Jörg Lehmann, Ana Claudia Zenclussen, Gunda Herberth, Martin von Bergen & Sven-Bastiaan Haange
Article: 2297831
Published online: 02 Jan 2024
AbstractforDSS treatment does not affect murine colonic microbiota in absence of the host | Full Text | References | PDF (5.5 MB) | EPUB | Supplemental
  • 2064 Views
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Open Access
Article
Influence of age, socioeconomic status, and location on the infant gut resistome across populations
Dhrati V. Patangia, Ghjuvan Grimaud, Shaopu Wang, R. Paul Ross & Catherine Stanton
Article: 2297837
Published online: 13 Jan 2024
AbstractforInfluence of age, socioeconomic status, and location on the infant gut resistome across populations | Full Text | References | PDF (6.3 MB) | EPUB | Supplemental
  • 1654 Views
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Open Access
Article
B. thetaiotaomicron-derived acetic acid modulate immune microenvironment and tumor growth in hepatocellular carcinoma
Hongbin Ma, Liang Yang, Yingchao Liang, Fenghua Liu, Jinxiang Hu, Rui Zhang, Yong Li, Lei Yuan & Feiling Feng
Article: 2297846
Published online: 25 Jan 2024
AbstractforB. thetaiotaomicron-derived acetic acid modulate immune microenvironment and tumor growth in hepatocellular carcinoma | Full Text | References | PDF (4 MB) | EPUB | Supplemental
  • 1886 Views
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Open Access
Article
A gut aging clock using microbiome multi-view profiles is associated with health and frail risk
Hongchao Wang, Yutao Chen, Ling Feng, Shourong Lu, Jinlin Zhu, Jianxin Zhao, Hao Zhang, Wei Chen & Wenwei Lu
Article: 2297852
Published online: 30 Jan 2024
AbstractforA gut aging clock using microbiome multi-view profiles is associated with health and frail risk | Full Text | References | PDF (5.3 MB) | EPUB
  • 1544 Views
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Open Access

Review

Review Article
Multi-omic approaches for host-microbiome data integration
Ashwin Chetty & Ran Blekhman
Article: 2297860
Published online: 02 Jan 2024
AbstractforMulti-omic approaches for host-microbiome data integration | Full Text | References | PDF (1.2 MB) | EPUB
  • 3783 Views
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Open Access
Review Article
Elucidating the role of diet in maintaining gut health to reduce the risk of obesity, cardiovascular and other age-related inflammatory diseases: recent challenges and future recommendations
Tariq Aziz, Nageen Hussain, Zunaira Hameed & Lin Lin
Article: 2297864
Published online: 04 Jan 2024
AbstractforElucidating the role of diet in maintaining gut health to reduce the risk of obesity, cardiovascular and other age-related inflammatory diseases: recent challenges and future recommendations | Full Text | References | PDF (6 MB) | EPUB
  • 4321 Views
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Open Access

Research Paper

Article
Hyperbaric oxygen augments susceptibility to C. difficile infection by impairing gut microbiota ability to stimulate the HIF-1α-IL-22 axis in ILC3
José L. Fachi, Laís. P. Pral, Helder C. Assis, Sarah Oliveira, Vinícius R. Rodovalho, Jefferson A. C. dos Santos, Mariane F. Fernandes, Valquíria A. Matheus, Renata Sesti-Costa, Paulo J. Basso, Marina Flóro e Silva, Niels O. S. Câmara, Selma Giorgio, Marco Colonna & Marco A. R. Vinolo
Article: 2297872
Published online: 02 Jan 2024
AbstractforHyperbaric oxygen augments susceptibility to C. difficile infection by impairing gut microbiota ability to stimulate the HIF-1α-IL-22 axis in ILC3 | Full Text | References | PDF (8.3 MB) | EPUB | Supplemental
  • 2359 Views
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Open Access
Article
Cryptosporidium infection of human small intestinal epithelial cells induces type III interferon and impairs infectivity of Rotavirus
Valentin Greigert, Iti Saraav, Juhee Son, Yinxing Zhu, Denise Dayao, Avan Antia, Saul Tzipori, William H. Witola, Thaddeus S. Stappenbeck, Siyuan Ding & L. David Sibley
Article: 2297897
Published online: 08 Jan 2024
AbstractforCryptosporidium infection of human small intestinal epithelial cells induces type III interferon and impairs infectivity of Rotavirus | Full Text | References | PDF (4 MB) | EPUB | Supplemental
  • 1631 Views
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Open Access
Article
Pasteurized Akkermansia muciniphila improves irritable bowel syndrome-like symptoms and related behavioral disorders in mice
Maëva Meynier, Valentine Daugey, Geoffroy Mallaret, Sandie Gervason, Mathieu Meleine, Julie Barbier, Youssef Aissouni, Stéphane Lolignier, Mathilde Bonnet, Denis Ardid, Willem M. De Vos, Matthias Van Hul, Peter Suenaert, Amandine Brochot, Patrice D. Cani & Frédéric A. Carvalho
Article: 2298026
Published online: 03 Jan 2024
AbstractforPasteurized Akkermansia muciniphila improves irritable bowel syndrome-like symptoms and related behavioral disorders in mice | Full Text | References | PDF (2.5 MB) | EPUB | Supplemental
  • 3584 Views
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Open Access
Article
Collinsella aerofaciens as a predictive marker of response to probiotic treatment in non-constipated irritable bowel syndrome
Giorgio Gargari, Giacomo Mantegazza, Cesare Cremon, Valentina Taverniti, Alice Valenza, Maria Raffaella Barbaro, Giovanni Marasco, Robin Duncan, Walter Fiore, Roberto Ferrari, Valerio De Vitis, Giovanni Barbara, Simone Guglielmetti & on behalf of the PROBE-IBS/2 group
Article: 2298246
Published online: 04 Jan 2024
AbstractforCollinsella aerofaciens as a predictive marker of response to probiotic treatment in non-constipated irritable bowel syndrome | Full Text | References | PDF (3.4 MB) | EPUB | Supplemental
  • 2344 Views
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Open Access
Article
Isolation and characterization of a novel lytic Parabacteroides distasonis bacteriophage φPDS1 from the human gut
Adrián Cortés-Martín, Rémi Denise, Emma Guerin, Stephen R. Stockdale, Lorraine A. Draper, R. Paul Ross, Andrey N. Shkoporov & Colin Hill
Article: 2298254
Published online: 04 Jan 2024
AbstractforIsolation and characterization of a novel lytic Parabacteroides distasonis bacteriophage φPDS1 from the human gut | Full Text | References | PDF (5 MB) | EPUB | Supplemental
  • 1834 Views
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Open Access
Article
Microbiome function and neurodevelopment in Black infants: vitamin B12 emerges as a key factor
Kaitlyn Oliphant, Wilfredo Cruz Ayala, Rimma Ilyumzhinova, Kimberley Mbayiwa, Anna Sroka, Bingqing Xie, Bree Andrews, Kate Keenan & Erika C. Claud
Article: 2298697
Published online: 01 Feb 2024
AbstractforMicrobiome function and neurodevelopment in Black infants: vitamin B12 emerges as a key factor | Full Text | References | PDF (6.9 MB) | EPUB | Supplemental
  • 1284 Views
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Open Access
Article
Gut microbiome-derived butyrate inhibits the immunosuppressive factors PD-L1 and IL-10 in tumor-associated macrophages in gastric cancer
Seung Yoon Lee, JooYeon Jhun, Jin Seok Woo, Kun Hee Lee, Sun-Hee Hwang, Jeonghyeon Moon, Goeun Park, Sun Shim Choi, So Jung Kim, Yoon Ju Jung, Kyo Young Song & Mi-La Cho
Article: 2300846
Published online: 10 Jan 2024
AbstractforGut microbiome-derived butyrate inhibits the immunosuppressive factors PD-L1 and IL-10 in tumor-associated macrophages in gastric cancer | Full Text | References | PDF (21.4 MB) | EPUB | Supplemental
  • 3529 Views
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Open Access
Article
Bifidobacterium alleviate metabolic disorders via converting methionine to 5’-methylthioadenosine
Qiang Lyu, Rou-An Chen, Hsiao-Li Chuang, Hsin-Bai Zou, Lihong Liu, Li-Kang Sung, Po-Yu Liu, Hsin-Yi Wu, Hsin-Yuan Chang, Wan-Ju Cheng, Wei-Kai Wu, Ming-Shiang Wu & Cheng-Chih Hsu
Article: 2300847
Published online: 04 Mar 2024
AbstractforBifidobacterium alleviate metabolic disorders via converting methionine to 5’-methylthioadenosine | Full Text | References | PDF (8.1 MB) | EPUB | Supplemental
  • 1727 Views
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Open Access
Article
Anti-S-layer monoclonal antibodies impact Clostridioides difficile physiology
Lise Hunault, Emile Auria, Patrick England, Julien Deschamps, Romain Briandet, Vanessa Kremer, Bruno Iannascoli, Léo Vidal-Maison, Chunguang Guo, Lynn Macdonald, Séverine Péchiné, Cécile Denève-Larrazet, Bruno Dupuy, Guy Gorochov, Pierre Bruhns & Delphine Sterlin
Article: 2301147
Published online: 30 Jan 2024
AbstractforAnti-S-layer monoclonal antibodies impact Clostridioides difficile physiology | Full Text | References | PDF (2.2 MB) | EPUB | Supplemental
  • 1035 Views
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Open Access
Article
Prophylactic treatment with Bacteroides uniformis and Bifidobacterium bifidum counteracts hepatic NK cell immune tolerance in nonalcoholic steatohepatitis induced by high fat diet
Jingyuan Xu, Qiaoyun Xia, Ting Wu, Yong Shao, Yatao Wang, Nuyun Jin, Peiying Tian, Longyun Wu & Xiaolan Lu
Article: 2302065
Published online: 09 Jan 2024
AbstractforProphylactic treatment with Bacteroides uniformis and Bifidobacterium bifidum counteracts hepatic NK cell immune tolerance in nonalcoholic steatohepatitis induced by high fat diet | Full Text | References | PDF (5.1 MB) | EPUB | Supplemental
  • 1868 Views
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Open Access
Article
Incorporating metabolic activity, taxonomy and community structure to improve microbiome-based predictive models for host phenotype prediction
Mahsa Monshizadeh & Yuzhen Ye
Article: 2302076
Published online: 12 Jan 2024
AbstractforIncorporating metabolic activity, taxonomy and community structure to improve microbiome-based predictive models for host phenotype prediction | Full Text | References | PDF (1.4 MB) | EPUB | Supplemental
  • 1673 Views
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Open Access
Article
Gut microbiota-driven metabolic alterations reveal gut–brain communication in Alzheimer’s disease model mice
Yijing Chen, Yinhu Li, Yingying Fan, Shuai Chen, Li Chen, Yuewen Chen & Yu Chen
Article: 2302310
Published online: 23 Jan 2024
AbstractforGut microbiota-driven metabolic alterations reveal gut–brain communication in Alzheimer’s disease model mice | Full Text | References | PDF (4.4 MB) | EPUB | Supplemental
  • 3033 Views
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Open Access

Review

Review Article
The contribution of age-related changes in the gut-brain axis to neurological disorders
Romeesa Khan, Claudia M. Di Gesù, Juneyoung Lee & Louise D. McCullough
Article: 2302801
Published online: 18 Jan 2024
AbstractforThe contribution of age-related changes in the gut-brain axis to neurological disorders | Full Text | References | PDF (3.4 MB) | EPUB
  • 3187 Views
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Open Access

Research Paper

Article
Disruption of gut barrier integrity and host–microbiome interactions underlie MASLD severity in patients with type-2 diabetes mellitus
R. Forlano, L. Martinez-Gili, P. Takis, J. Miguens-Blanco, T. Liu, E. Triantafyllou, C. Skinner, R Loomba, M. Thursz, J. R. Marchesi, B.H. Mullish & P. Manousou
Article: 2304157
Published online: 18 Jan 2024
AbstractforDisruption of gut barrier integrity and host–microbiome interactions underlie MASLD severity in patients with type-2 diabetes mellitus | Full Text | References | PDF (1.2 MB) | EPUB | Supplemental
  • 2358 Views
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Open Access
Article
Longitudinal analysis of the gut microbiome in adolescent patients with anorexia nervosa: microbiome-related factors associated with clinical outcome
Nadia Andrea Andreani, Arunabh Sharma, Brigitte Dahmen, Hannah E. Specht, Nina Mannig, Vanessa Ruan, Lara Keller, John F. Baines, Beate Herpertz-Dahlmann, Astrid Dempfle & Jochen Seitz
Article: 2304158
Published online: 31 Jan 2024
AbstractforLongitudinal analysis of the gut microbiome in adolescent patients with anorexia nervosa: microbiome-related factors associated with clinical outcome | Full Text | References | PDF (3.7 MB) | EPUB | Supplemental
  • 1629 Views
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Open Access
Article
Bacteroides thetaiotaomicron ameliorates mouse hepatic steatosis through regulating gut microbial composition, gut-liver folate and unsaturated fatty acids metabolism
Hu Li, Xue-Kai Wang, Mei Tang, Lei Lei, Jian-Rui Li, Han Sun, Jing Jiang, Biao Dong, Hong-Ying Li, Jian-Dong Jiang & Zong-Gen Peng
Article: 2304159
Published online: 26 Jan 2024
AbstractforBacteroides thetaiotaomicron ameliorates mouse hepatic steatosis through regulating gut microbial composition, gut-liver folate and unsaturated fatty acids metabolism | Full Text | References | PDF (5.4 MB) | EPUB
  • 2381 Views
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Open Access
Article
Tunable control of B. infantis abundance and gut metabolites by co-administration of human milk oligosaccharides
Abigail L. Reens, Casey M. Cosetta, Russell Saur, Olivia Trofimuk, Sarah L. Brooker, Martin L. Lee, Adam K. Sun, Gregory J. McKenzie & Julie E. Button
Article: 2304160
Published online: 18 Jan 2024
AbstractforTunable control of B. infantis abundance and gut metabolites by co-administration of human milk oligosaccharides | Full Text | References | PDF (3.1 MB) | EPUB
  • 1790 Views
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Open Access
Article
Meta-analysis reveals obesity associated gut microbial alteration patterns and reproducible contributors of functional shift
Deep Chanda & Debojyoti De
Article: 2304900
Published online: 24 Jan 2024
AbstractforMeta-analysis reveals obesity associated gut microbial alteration patterns and reproducible contributors of functional shift | Full Text | References | PDF (15.1 MB) | EPUB | Supplemental
  • 2607 Views
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Open Access
Article
A synthetic microbial consortium protects against obesity by regulating vitamin B6 metabolism
Xiuzhao Chen, Mengxue Gao, Lina Wang, Guifen Qiang, Yili Wu, He Huang & Guangbo Kang
Article: 2304901
Published online: 25 Jan 2024
AbstractforA synthetic microbial consortium protects against obesity by regulating vitamin B6 metabolism | Full Text | References | PDF (6.5 MB) | EPUB | Supplemental
  • 1744 Views
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Open Access
Article
Antibiotic-induced gut dysbiosis elicits gut-brain axis relevant multi-omic signatures and behavioral and neuroendocrine changes in a nonhuman primate model
Shivdeep S. Hayer, Mackenzie Conrin, Jeffrey A. French, Andrew K. Benson, Sophie Alvarez, Kathryn Cooper, Anne Fischer, Zahraa Wajih Alsafwani, William Gasper, Mallory J. Suhr Van Haute, Haley R. Hassenstab, Shayda Azadmanesh, Missy Briardy, Skyler Gerbers, Aliyah Jabenis, Jennifer L. Thompson & Jonathan B. Clayton
Article: 2305476
Published online: 29 Jan 2024
AbstractforAntibiotic-induced gut dysbiosis elicits gut-brain axis relevant multi-omic signatures and behavioral and neuroendocrine changes in a nonhuman primate model | Full Text | References | PDF (5.5 MB) | EPUB | Supplemental
  • 1999 Views
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Open Access

Commentary and Views

Direct evidence of host-mediated glycosylation of NleA and its dependence on interaction with the COPII complex
Lindsay Burns, François Le Mauff & Samantha Gruenheid
Article: 2305477
Published online: 01 Feb 2024
AbstractforDirect evidence of host-mediated glycosylation of NleA and its dependence on interaction with the COPII complex | Full Text | References | PDF (493.1 KB) | EPUB
  • 872 Views
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Open Access

Review

Review Article
Exploring substrate–microbe interactions: a metabiotic approach toward developing targeted synbiotic compositions
Bodo Speckmann, Ellen Ehring, Jiaying Hu & Ana Rodriguez Mateos
Article: 2305716
Published online: 01 Feb 2024
AbstractforExploring substrate–microbe interactions: a metabiotic approach toward developing targeted synbiotic compositions | Full Text | References | PDF (3.6 MB) | EPUB
  • 1600 Views
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Open Access

Research Paper

Article
Gut microbiota modulate CD8+ T cell immunity in gastric cancer through Butyrate/GPR109A/HOPX
Xiang Yu, Jinzhou Ou, Lingzhi Wang, Zhenyuan Li, Yingxin Ren, Lang Xie, Zhian Chen, Junxian Liang, Guodong Shen, Zhaowei Zou, Cuiyin Zhao, Guoxin Li & Yanfeng Hu
Article: 2307542
Published online: 06 Feb 2024
AbstractforGut microbiota modulate CD8+ T cell immunity in gastric cancer through Butyrate/GPR109A/HOPX | Full Text | References | PDF (10 MB) | EPUB | Supplemental
  • 1953 Views
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Open Access
Article
Gut microbiota-derived indole compounds attenuate metabolic dysfunction-associated steatotic liver disease by improving fat metabolism and inflammation
Byeong Hyun Min, Shivani Devi, Goo Hyun Kwon, Haripriya Gupta, Jin-Ju Jeong, Satya Priya Sharma, Sung-Min Won, Ki-Kwang Oh, Sang Jun Yoon, Hee Jin Park, Jung A Eom, Min Kyo Jeong, Ji Ye Hyun, Nattan Stalin, Tae-Sik Park, Jieun Choi, Do Yup Lee, Sang Hak Han, Dong Joon Kim & Ki Tae Suk
Article: 2307568
Published online: 01 Feb 2024
AbstractforGut microbiota-derived indole compounds attenuate metabolic dysfunction-associated steatotic liver disease by improving fat metabolism and inflammation | Full Text | References | PDF (6.6 MB) | EPUB | Supplemental
  • 2738 Views
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Commentary and View

Microbial stars: shedding light on gut microbes’ role in insulin resistance and innovative diabetes therapies
Jinwei Zhang
Article: 2307581
Published online: 26 Jan 2024
AbstractforMicrobial stars: shedding light on gut microbes’ role in insulin resistance and innovative diabetes therapies | Full Text | References | PDF (739.2 KB) | EPUB
  • 1055 Views
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Research Paper

Article
Fungal signature differentiates alcohol-associated liver disease from nonalcoholic fatty liver disease
Greta Viebahn, Phillipp Hartmann, Sonja Lang, Münevver Demir, Xinlian Zhang, Derrick E. Fouts, Peter Stärkel & Bernd Schnabl
Article: 2307586
Published online: 01 Feb 2024
AbstractforFungal signature differentiates alcohol-associated liver disease from nonalcoholic fatty liver disease | Full Text | References | PDF (4 MB) | EPUB | Supplemental
  • 1194 Views
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Open Access
Article
Citrobacter rodentium possesses a functional type II secretion system necessary for successful host infection
Z Krekhno, SE Woodward, A Serapio-Palacios, J Peña-Díaz, KM Moon, LJ Foster & BB Finlay
Article: 2308049
Published online: 01 Feb 2024
AbstractforCitrobacter rodentium possesses a functional type II secretion system necessary for successful host infection | Full Text | References | PDF (1.7 MB) | EPUB | Supplemental
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Introduction

Introduction
The IBS bug-pain connection
Elena F Verdu & Stephen Vanner
Article: 2308956
Published online: 08 Feb 2024
CitationforThe IBS bug-pain connection | Full Text | References | PDF (184.9 KB) | EPUB
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Research Paper

Article
Effects of breastfeeding on children’s gut colonization with multidrug-resistant Enterobacterales in peri-urban Lima, Peru
Maya L. Nadimpalli, Luismarcelo Rojas Salvatierra, Subhra Chakraborty, Jenna M. Swarthout, Lilia Z. Cabrera, Amy J. Pickering, Maritza Calderon, Mayuko Saito, Robert H. Gilman & Monica J. Pajuelo
Article: 2309681
Published online: 01 Feb 2024
AbstractforEffects of breastfeeding on children’s gut colonization with multidrug-resistant Enterobacterales in peri-urban Lima, Peru | Full Text | References | PDF (1.1 MB) | EPUB | Supplemental
  • 1047 Views
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Article
Lack of gut microbiome recovery with spinal cord injury rehabilitation
Ayelet Gur Arie, Itamar Toren, Rotem Hadar, Tzipi Braun, Gilat Efroni, Efrat Glick Saar, Zecharia Madar, Amnon Amir, Gabriel Zeilig & Yael Haberman
Article: 2309682
Published online: 07 Feb 2024
AbstractforLack of gut microbiome recovery with spinal cord injury rehabilitation | Full Text | References | PDF (2.6 MB) | EPUB | Supplemental
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Article
Phocaeicola vulgatus alleviates diet-induced metabolic dysfunction-associated steatotic liver disease progression by downregulating histone acetylation level via 3-HPAA
Shengxi Jin, Peng Chen, Jing Yang, Duguang Li, Xiaolong Liu, Yiyin Zhang, Qiming Xia, Yiling Li, Guoqiao Chen, Yixuan Li, Yifan Tong, Weihua Yu, Xiaoxiao Fan & Hui Lin
Article: 2309683
Published online: 05 Feb 2024
AbstractforPhocaeicola vulgatus alleviates diet-induced metabolic dysfunction-associated steatotic liver disease progression by downregulating histone acetylation level via 3-HPAA | Full Text | References | PDF (6.4 MB) | EPUB | Supplemental
  • 1719 Views
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Article
A universe of human gut-derived bacterial prophages: unveiling the hidden viral players in intestinal microecology
Zhangming Pei, Yufei Liu, Yutao Chen, Tong Pan, Xihao Sun, Hongchao Wang, R. Paul Ross, Wenwei Lu & Wei Chen
Article: 2309684
Published online: 01 Feb 2024
AbstractforA universe of human gut-derived bacterial prophages: unveiling the hidden viral players in intestinal microecology | Full Text | References | PDF (8.9 MB) | EPUB | Supplemental
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Article
Colibactin-producing Escherichia coli enhance resistance to chemotherapeutic drugs by promoting epithelial to mesenchymal transition and cancer stem cell emergence
Guillaume Dalmasso, Antony Cougnoux, Tiphanie Faïs, Virginie Bonnin, Benoit Mottet-Auselo, Hang TT Nguyen, Pierre Sauvanet, Nicolas Barnich, Marine Jary, Denis Pezet, Julien Delmas & Richard Bonnet
Article: 2310215
Published online: 19 Feb 2024
AbstractforColibactin-producing Escherichia coli enhance resistance to chemotherapeutic drugs by promoting epithelial to mesenchymal transition and cancer stem cell emergence | Full Text | References | PDF (4.2 MB) | EPUB | Supplemental
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Article
Vancomycin relieves tacrolimus-induced hyperglycemia by eliminating gut bacterial beta-glucuronidase enzyme activity
Peixia Li, Rui Zhang, Jinping Zhou, Pengpeng Guo, Yani Liu & Shaojun Shi
Article: 2310277
Published online: 08 Feb 2024
AbstractforVancomycin relieves tacrolimus-induced hyperglycemia by eliminating gut bacterial beta-glucuronidase enzyme activity | Full Text | References | PDF (11.3 MB) | EPUB | Supplemental
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Article
Prescription opioids induced microbial dysbiosis worsens severity of chronic pancreatitis and drives pain hypersensitivity
Kousik Kesh, Junyi Tao, Nillu Ghosh, Richa Jalodia, Salma Singh, Rajinder Dawra & Sabita Roy
Article: 2310291
Published online: 08 Feb 2024
AbstractforPrescription opioids induced microbial dysbiosis worsens severity of chronic pancreatitis and drives pain hypersensitivity | Full Text | References | PDF (3.9 MB) | EPUB | Supplemental
  • 1314 Views
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Article
Repeated (S)-ketamine administration ameliorates the spatial working memory impairment in mice with chronic pain: role of the gut microbiota–brain axis
Yubin Jiang, Xingming Wang, Jiawei Chen, Yibao Zhang, Kenji Hashimoto, Jian-Jun Yang & Zhiqiang Zhou
Article: 2310603
Published online: 08 Feb 2024
AbstractforRepeated (S)-ketamine administration ameliorates the spatial working memory impairment in mice with chronic pain: role of the gut microbiota–brain axis | Full Text | References | PDF (5.9 MB) | EPUB | Supplemental
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Article
Integrated multi-omics reveal gut microbiota-mediated bile acid metabolism alteration regulating immunotherapy responses to anti-α4β7-integrin in Crohn’s disease
Bing Han, Daiyuan Tang, Xiaodan Lv, Junhua Fan, Shiquan Li, Hui Zhu, Jiatong Zhang, Shang Xu, Xiaofang Xu, Ziqian Huang, Zhixi Huang, Guangfu Lin, Lingling Zhan & Xiaoping Lv
Article: 2310894
Published online: 05 Feb 2024
AbstractforIntegrated multi-omics reveal gut microbiota-mediated bile acid metabolism alteration regulating immunotherapy responses to anti-α4β7-integrin in Crohn’s disease | Full Text | References | PDF (18.6 MB) | EPUB | Supplemental
  • 1532 Views
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Article
Gut microbiota-derived trimethylamine N-Oxide: a novel target for the treatment of preeclampsia
Jiayi Wang, Yajie Gao, Shuaijun Ren, Jialin Li, Siqian Chen, Jiating Feng, Bing He, Yuping Zhou & Rongrong Xuan
Article: 2311888
Published online: 13 Feb 2024
AbstractforGut microbiota-derived trimethylamine N-Oxide: a novel target for the treatment of preeclampsia | Full Text | References | PDF (9.7 MB) | EPUB | Supplemental
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Article
Gut microbiota regulates host melatonin production through epithelial cell MyD88
Bingnan Liu, Lijuan Fan, Youxia Wang, Hao Wang, Yuqi Yan, Shuai Chen, Ifen Hung, Chunxue Liu, Hong Wei, Liangpeng Ge & Wenkai Ren
Article: 2313769
Published online: 14 Feb 2024
AbstractforGut microbiota regulates host melatonin production through epithelial cell MyD88 | Full Text | References | PDF (5.7 MB) | EPUB | Supplemental
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Article
Weizmannia coagulans BCF-01: a novel gastrogenic probiotic for Helicobacter pylori infection control
Zhenhui Chen, Ziyu Tang, Wendan Li, Xiaoshi Deng, Lu Yu, Jixiang Yang, Jiaxin Liu, Yunshui Cheng, Wanwen Huang, Xiaotong Guo, Jiamin Shan, Daixuan Zhou, Weisen Zeng, Yang Bai & Hongying Fan
Article: 2313770
Published online: 09 Feb 2024
AbstractforWeizmannia coagulans BCF-01: a novel gastrogenic probiotic for Helicobacter pylori infection control | Full Text | References | PDF (8.1 MB) | EPUB | Supplemental
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Review

Review Article
The Helicobacter pylori cag pathogenicity island as a determinant of gastric cancer risk
Sirena C. Tran, Kaeli N. Bryant & Timothy L. Cover
Article: 2314201
Published online: 23 Feb 2024
AbstractforThe Helicobacter pylori cag pathogenicity island as a determinant of gastric cancer risk | Full Text | References | PDF (1.5 MB) | EPUB
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Research Paper

Article
The biotherapeutic Clostridium butyricum MIYAIRI 588 strain potentiates enterotropism of Rorγt+Treg and PD-1 blockade efficacy
Thomas Paz Del Socorro, Kentaro Oka, Olivier Boulard, Motomichi Takahashi, Lionel Franz Poulin, Atsushi Hayashi & Mathias Chamaillard
Article: 2315631
Published online: 22 Feb 2024
AbstractforThe biotherapeutic Clostridium butyricum MIYAIRI 588 strain potentiates enterotropism of Rorγt+Treg and PD-1 blockade efficacy | Full Text | References | PDF (3.5 MB) | EPUB | Supplemental
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Article
Dietary resistant starch supplementation increases gut luminal deoxycholic acid abundance in mice
Melanie A. Reuter, Madelynn Tucker, Zara Marfori, Rahaf Shishani, Jessica Miranda Bustamante, Rosalinda Moreno, Michael L. Goodson, Allison Ehrlich, Ameer Y. Taha, Pamela J. Lein, Nikhil Joshi, Ilana Brito, Blythe Durbin-Johnson, Renu Nandakumar & Bethany P. Cummings
Article: 2315632
Published online: 20 Feb 2024
AbstractforDietary resistant starch supplementation increases gut luminal deoxycholic acid abundance in mice | Full Text | References | PDF (3.4 MB) | EPUB | Supplemental
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Article
Gut enterotype-dependent modulation of gut microbiota and their metabolism in response to xanthohumol supplementation in healthy adults
Paige E. Jamieson, Eli B. Smart, John A. Bouranis, Jaewoo Choi, Robert E. Danczak, Carmen P. Wong, Ines L. Paraiso, Claudia S. Maier, Emily Ho, Thomas J. Sharpton, Thomas O. Metz, Ryan Bradley & Jan F. Stevens
Article: 2315633
Published online: 15 Feb 2024
AbstractforGut enterotype-dependent modulation of gut microbiota and their metabolism in response to xanthohumol supplementation in healthy adults | Full Text | References | PDF (2.9 MB) | EPUB | Supplemental
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Article
Probiotic Lactobacillus spp. improves Drosophila memory by increasing lactate dehydrogenase levels in the brain mushroom body neurons
Shuk-Man Ho, Wan-Hua Tsai, Chih-Ho Lai, Meng-Hsuan Chiang, Wang-Po Lee, Hui-Yu Wu, Pei-Yi Bai, Tony Wu & Chia-Lin Wu
Article: 2316533
Published online: 19 Feb 2024
AbstractforProbiotic Lactobacillus spp. improves Drosophila memory by increasing lactate dehydrogenase levels in the brain mushroom body neurons | Full Text | References | PDF (3.6 MB) | EPUB | Supplemental
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Article
A tailored series of engineered yeasts for the cell-dependent treatment of inflammatory bowel disease by rational butyrate supplementation
Jiahao Wu, He Huang, Lina Wang, Mengxue Gao, Shuxian Meng, Shaolan Zou, Yuanhang Feng, Zeling Feng, Zhixin Zhu, Xiaocang Cao, Bingzhi Li & Guangbo Kang
Article: 2316575
Published online: 21 Feb 2024
AbstractforA tailored series of engineered yeasts for the cell-dependent treatment of inflammatory bowel disease by rational butyrate supplementation | Full Text | References | PDF (7 MB) | EPUB | Supplemental
  • 1653 Views
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Article
S-amlodipine induces liver inflammation and dysfunction through the alteration of intestinal microbiome in a rat model
Xinxin Liu, Hui Fang, Liuzhu Pan, Peng Zhang, Huai Lin, Huihui Gao, Chaolin Ye, Daqing Mao & Yi Luo
Article: 2316923
Published online: 24 Feb 2024
AbstractforS-amlodipine induces liver inflammation and dysfunction through the alteration of intestinal microbiome in a rat model | Full Text | References | PDF (9.8 MB) | EPUB | Supplemental
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Commentary and View

From a hunger-regulating hormone to an antimicrobial peptide: gastrointestinal derived circulating endocrine hormone-peptide YY exerts exocrine antimicrobial effects against selective gut microbiota
Yuchen Xiao, Lingjing Jin & Chao Zhang
Article: 2316927
Published online: 14 Feb 2024
First Page PreviewforFrom a hunger-regulating hormone to an antimicrobial peptide: gastrointestinal derived circulating endocrine hormone-peptide YY exerts exocrine antimicrobial effects against selective gut microbiota | Full Text | References | PDF (2.5 MB) | EPUB
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Research Paper

Article
Salmonella enterica serovar Typhimurium remodels mitochondrial dynamics of macrophages via the T3SS effector SipA to promote intracellular proliferation
Xingmei Liu, Yutao Liu, Xinyu Zhao, Xueping Li, Ting Yao, Ruiying Liu, Qian Wang, Qiushi Wang, Dan Li, Xintong Chen, Bin Liu & Lu Feng
Article: 2316932
Published online: 14 Feb 2024
AbstractforSalmonella enterica serovar Typhimurium remodels mitochondrial dynamics of macrophages via the T3SS effector SipA to promote intracellular proliferation | Full Text | References | PDF (4.6 MB) | EPUB | Supplemental
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Article
The intestinal microbiome of inflammatory bowel disease across the pediatric age range
Máire A. Conrad, Kyle Bittinger, Yue Ren, Kelly Kachelries, Jennifer Vales, Hongzhe Li, Gary D. Wu, Frederic D. Bushman, Marcella Devoto, Robert N Baldassano & Judith R. Kelsen
Article: 2317932
Published online: 25 Feb 2024
AbstractforThe intestinal microbiome of inflammatory bowel disease across the pediatric age range | Full Text | References | PDF (3.1 MB) | EPUB | Supplemental
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Article
Chemotherapy-induced microbiota exacerbates the toxicity of chemotherapy through the suppression of interleukin-10 from macrophages
Zhen He, Hongyu Xie, Haoyang Xu, Jinjie Wu, Wanyi Zeng, Qilang He, Christian Jobin, Sanqing Jin & Ping Lan
Article: 2319511
Published online: 24 Feb 2024
AbstractforChemotherapy-induced microbiota exacerbates the toxicity of chemotherapy through the suppression of interleukin-10 from macrophages | Full Text | References | PDF (8.6 MB) | EPUB | Supplemental
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Article
Regulation of colonic neuropeptide Y expression by the gut microbiome in patients with ulcerative colitis and its association with anxiety- and depression-like behavior in mice
Min-Kyung Joo, Jae-Won Lee, Jeong-Hwa Woo, Hyo-Jong Kim, Dong-Hyun Kim & Jung-Hye Choi
Article: 2319844
Published online: 25 Feb 2024
AbstractforRegulation of colonic neuropeptide Y expression by the gut microbiome in patients with ulcerative colitis and its association with anxiety- and depression-like behavior in mice | Full Text | References | PDF (3.3 MB) | EPUB | Supplemental
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Article
B. longum CKD1 enhances the efficacy of anti-diabetic medicines through upregulation of IL- 22 response in type 2 diabetic mice
Won Jun Kim, Bum Ju Kil, Chaewon Lee, Tae Young Kim, Goeun Han, Yukyung Choi, Kyunghwan Kim, Chang Hun Shin, Seung-Young Park, Heebal Kim, Myunghoo Kim & Chul Sung Huh
Article: 2319889
Published online: 23 Feb 2024
AbstractforB. longum CKD1 enhances the efficacy of anti-diabetic medicines through upregulation of IL- 22 response in type 2 diabetic mice | Full Text | References | PDF (17.7 MB) | EPUB | Supplemental
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Review

Review Article
Roles of microbiota in pancreatic cancer development and treatment
Mariana Santos Cruz, Joseph Tintelnot & Nicola Gagliani
Article: 2320280
Published online: 27 Feb 2024
AbstractforRoles of microbiota in pancreatic cancer development and treatment | Full Text | References | PDF (1.2 MB) | EPUB
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Research Paper

Article
Modulation of chronic obstructive pulmonary disease progression by antioxidant metabolites from Pediococcus pentosaceus: enhancing gut probiotics abundance and the tryptophan-melatonin pathway
Yiting Liu, Longjie Li, Jing Feng, Bing Wan, Qiang Tu, Wei Cai, Fa Jin, Guiying Tang, Lígia R. Rodrigues, Xiuwei Zhang, Jia Yin & Yunlei Zhang
Article: 2320283
Published online: 06 Mar 2024
AbstractforModulation of chronic obstructive pulmonary disease progression by antioxidant metabolites from Pediococcus pentosaceus: enhancing gut probiotics abundance and the tryptophan-melatonin pathway | Full Text | References | PDF (9.2 MB) | EPUB | Supplemental
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Article
The colibactin-producing Escherichia coli alters the tumor microenvironment to immunosuppressive lipid overload facilitating colorectal cancer progression and chemoresistance
Nilmara de Oliveira Alves, Guillaume Dalmasso, Darja Nikitina, Amaury Vaysse, Richard Ruez, Lea Ledoux, Thierry Pedron, Emma Bergsten, Olivier Boulard, Lora Autier, Sofian Allam, Laurence Motreff, Pierre Sauvanet, Diane Letourneur, Pragya Kashyap, Johan Gagnière, Denis Pezet, Catherine Godfraind, Michel Salzet, Emmanuel Lemichez, Mathilde Bonnet, Imène Najjar, Christophe Malabat, Marc Monot, Denis Mestivier, Nicolas Barnich, Pankaj Yadav, Isabelle Fournier, Sean Kennedy, Amel Mettouchi, Richard Bonnet, Iradj Sobhani & Mathias Chamaillard
Article: 2320291
Published online: 28 Feb 2024
AbstractforThe colibactin-producing Escherichia coli alters the tumor microenvironment to immunosuppressive lipid overload facilitating colorectal cancer progression and chemoresistance | Full Text | References | PDF (3 MB) | EPUB | Supplemental
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Article
IgA-mediated control of host-microbial interaction during weaning reaction influences gut inflammation
Wenjie Tang, Yusen Wei, Zhixiang Ni, Kangwei Hou, Xin M. Luo & Haifeng Wang
Article: 2323220
Published online: 04 Mar 2024
AbstractforIgA-mediated control of host-microbial interaction during weaning reaction influences gut inflammation | Full Text | References | PDF (6 MB) | EPUB | Supplemental
  • 1081 Views
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Article
Gut microbiota-palmitoleic acid-interleukin-5 axis orchestrates benzene-induced hematopoietic toxicity
Lei Zhang, Ziyan Liu, Wei Zhang, Jingyu Wang, Huiwen Kang, Jiaru Jing, Lin Han & Ai Gao
Article: 2323227
Published online: 04 Mar 2024
AbstractforGut microbiota-palmitoleic acid-interleukin-5 axis orchestrates benzene-induced hematopoietic toxicity | Full Text | References | PDF (8.5 MB) | EPUB | Supplemental
  • 828 Views
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Article
Bile acid profiling as an effective biomarker for staging in pediatric inflammatory bowel disease
Wei Chen, Daosheng Wang, Xing Deng, Hong Zhang, Danfeng Dong, Tongxuan Su, Qiuya Lu, Cen Jiang, Qi Ni, Yingchao Cui, Qianli Zhao, Xuefeng Wang, Yuan Xiao & Yibing Peng
Article: 2323231
Published online: 04 Mar 2024
AbstractforBile acid profiling as an effective biomarker for staging in pediatric inflammatory bowel disease | Full Text | References | PDF (12.1 MB) | EPUB | Supplemental
  • 1263 Views
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Article
A metagenomic prospective cohort study on gut microbiome composition and clinical infection in small bowel transplantation
Archana Madhav, Rachel Bousfield, Joana Pereira-Dias, Claire Cormie, Sally Forrest, Jacqueline Keane, Leanne Kermack, Ellen Higginson, Gordon Dougan, Harry Spiers, Dunecan Massey, Lisa Sharkey, Charlotte Rutter, Jeremy Woodward, Neil Russell, Irum Amin, Andrew Butler, Kayleigh Atkinson, Tom Dymond, Josefin Bartholdson Scott, Stephen Baker & Effrossyni Gkrania-Klotsas
Article: 2323232
Published online: 04 Mar 2024
AbstractforA metagenomic prospective cohort study on gut microbiome composition and clinical infection in small bowel transplantation | Full Text | References | PDF (4.1 MB) | EPUB | Supplemental
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Article
BaiJ and BaiB are key enzymes in the chenodeoxycholic acid 7α-dehydroxylation pathway in the gut microbe Clostridium scindens ATCC 35704
Karin Lederballe Meibom, Solenne Marion, Colin Volet, Théo Nass, Eduard Vico-Oton, Laure Menin & Rizlan Bernier-Latmani
Article: 2323233
Published online: 11 Mar 2024
AbstractforBaiJ and BaiB are key enzymes in the chenodeoxycholic acid 7α-dehydroxylation pathway in the gut microbe Clostridium scindens ATCC 35704 | Full Text | References | PDF (3.8 MB) | EPUB | Supplemental
  • 790 Views
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Article
Maternal smoking during pregnancy increases the risk of gut microbiome-associated childhood overweight and obesity
Ye Peng, Hein M Tun, Siew C Ng, Hogan Kok-Fung Wai, Xi Zhang, Jaclyn Parks, Catherine J Field, Piush Mandhane, Theo J Moraes, Elinor Simons, Stuart E Turvey, Padmaja Subbarao, Jeffrey R Brook, Tim K Takaro, James A Scott, Francis KL Chan & Anita L Kozyrskyj
Article: 2323234
Published online: 04 Mar 2024
AbstractforMaternal smoking during pregnancy increases the risk of gut microbiome-associated childhood overweight and obesity | Full Text | References | PDF (3 MB) | EPUB | Supplemental
  • 1805 Views
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Article
A metatranscriptomics strategy for efficient characterization of the microbiome in human tissues with low microbial biomass
Joana Pereira-Marques, Rui M. Ferreira & Ceu Figueiredo
Article: 2323235
Published online: 29 Feb 2024
AbstractforA metatranscriptomics strategy for efficient characterization of the microbiome in human tissues with low microbial biomass | Full Text | References | PDF (5.3 MB) | EPUB | Supplemental
  • 1659 Views
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Article
Multi-omics reveals deoxycholic acid modulates bile acid metabolism via the gut microbiota to antagonize carbon tetrachloride-induced chronic liver injury
Li Zhang, Zhiyi Zheng, Huanhuan Huang, Ya Fu, Tianbin Chen, Can Liu, Qiang Yi, Caorui Lin, Yongjun Zeng, Qishui Ou & Yongbin Zeng
Article: 2323236
Published online: 28 Feb 2024
AbstractforMulti-omics reveals deoxycholic acid modulates bile acid metabolism via the gut microbiota to antagonize carbon tetrachloride-induced chronic liver injury | Full Text | References | PDF (19.8 MB) | EPUB | Supplemental
  • 1299 Views
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Review

Review Article
Advancing lifelong precision medicine for cardiovascular diseases through gut microbiota modulation
Bozhong Shi, Haoyu Li & Xiaomin He
Article: 2323237
Published online: 27 Feb 2024
AbstractforAdvancing lifelong precision medicine for cardiovascular diseases through gut microbiota modulation | Full Text | References | PDF (1.7 MB) | EPUB
  • 1390 Views
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Research Paper

Article
A modified Mediterranean-style diet enhances brain function via specific gut-microbiome-brain mechanisms
Gwoncheol Park, Saurabh Kadyan, Nathaniel Hochuli, Julie Pollak, Bo Wang, Gloria Salazar, Paramita Chakrabarty, Philip Efron, Julia Sheffler & Ravinder Nagpal
Article: 2323752
Published online: 06 Mar 2024
AbstractforA modified Mediterranean-style diet enhances brain function via specific gut-microbiome-brain mechanisms | Full Text | References | PDF (20 MB) | EPUB | Supplemental
  • 2571 Views
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Article
Shotgun metagenomics and systemic targeted metabolomics highlight indole-3-propionic acid as a protective gut microbial metabolite against influenza infection
Séverine Heumel, Vinícius de Rezende Rodovalho, Charlotte Urien, Florian Specque, Patrícia Brito Rodrigues, Cyril Robil, Lou Delval, Valentin Sencio, Amandine Descat, Lucie Deruyter, Stéphanie Ferreira, Marina Gomes Machado, Adeline Barthelemy, Fabiola Silva Angulo, Joel. T Haas, Jean François Goosens, Isabelle Wolowczuk, Corinne Grangette, Yves Rouillé, Ghjuvan Grimaud, Marie Lenski, Benjamin Hennart, Marco Aurélio Ramirez Vinolo & François Trottein
Article: 2325067
Published online: 06 Mar 2024
AbstractforShotgun metagenomics and systemic targeted metabolomics highlight indole-3-propionic acid as a protective gut microbial metabolite against influenza infection | Full Text | References | PDF (5.8 MB) | EPUB | Supplemental
  • 2447 Views
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Article
mNFE: microbiome network flow entropy for detecting pre-disease states of type 1 diabetes
Rong Gao, Peiluan Li, Yueqiong Ni, Xueqing Peng, Jing Ren & Luonan Chen
Article: 2327349
Published online: 21 Mar 2024
AbstractformNFE: microbiome network flow entropy for detecting pre-disease states of type 1 diabetes | Full Text | References | PDF (9.8 MB) | EPUB | Supplemental
  • 807 Views
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Article
ZntA maintains zinc and cadmium homeostasis and promotes oxidative stress resistance and virulence in Vibrio parahaemolyticus
Chengkun Zheng, Yimeng Zhai, Jun Qiu, Mengxian Wang, Zhengzhong Xu, Xiang Chen, Xiaohui Zhou & Xinan Jiao
Article: 2327377
Published online: 11 Mar 2024
AbstractforZntA maintains zinc and cadmium homeostasis and promotes oxidative stress resistance and virulence in Vibrio parahaemolyticus | Full Text | References | PDF (3.2 MB) | EPUB | Supplemental
  • 1237 Views
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Review

Review Article
Stress in the microbiome-immune crosstalk
Eléonore Beurel
Article: 2327409
Published online: 15 Mar 2024
AbstractforStress in the microbiome-immune crosstalk | Full Text | References | PDF (3.2 MB) | EPUB
  • 1169 Views
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Research Paper

Article
Long- and short-term effects of fecal microbiota transplantation on antibiotic resistance genes: results from a randomized placebo-controlled trial
Armin Rashidi, Maryam Ebadi, Tauseef Ur Rehman, Heba Elhusseini, David Kazadi, Hossam Halaweish, Mohammad H. Khan, Andrea Hoeschen, Qing Cao, Xianghua Luo, Amanda J. Kabage, Sharon Lopez, Shernan G. Holtan, Daniel J. Weisdorf, Chang Liu, Satoshi Ishii, Alexander Khoruts & Christopher Staley
Article: 2327442
Published online: 13 Mar 2024
AbstractforLong- and short-term effects of fecal microbiota transplantation on antibiotic resistance genes: results from a randomized placebo-controlled trial | Full Text | References | PDF (2.9 MB) | EPUB | Supplemental
  • 1257 Views
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Review

Review Article
Unveiling the hidden players: exploring the role of gut mycobiome in cancer development and treatment dynamics
Lingxi Li, Xiaowen Huang & Haoyan Chen
Article: 2328868
Published online: 14 Mar 2024
AbstractforUnveiling the hidden players: exploring the role of gut mycobiome in cancer development and treatment dynamics | Full Text | References | PDF (1,020.7 KB) | EPUB
  • 1003 Views
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Research Paper

Article
Indole-3-acetic acid alleviates DSS-induced colitis by promoting the production of R-equol from Bifidobacterium pseudolongum
Miaomiao Li, Xue Han, Lijun Sun, Xinjuan Liu, Weizhen Zhang & Jianyu Hao
Article: 2329147
Published online: 25 Mar 2024
AbstractforIndole-3-acetic acid alleviates DSS-induced colitis by promoting the production of R-equol from Bifidobacterium pseudolongum | Full Text | References | PDF (5.8 MB) | EPUB | Supplemental
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Correction

Correction
Correction
Article: 2329383
Published online: 14 Mar 2024
CitationforCorrection | Full Text | PDF (422.3 KB) | EPUB
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Research Paper

Article
Integrated analysis of gut metabolome, microbiome, and brain function reveal the role of gut-brain axis in longevity
Bin Jiao, Ziyu Ouyang, Qianqian Liu, Tianyan Xu, Meidan Wan, Guangrong Ma, Lu Zhou, Jifeng Guo, Junling Wang, Beisha Tang, Zhixiang Zhao & Lu Shen
Article: 2331434
Published online: 28 Mar 2024
AbstractforIntegrated analysis of gut metabolome, microbiome, and brain function reveal the role of gut-brain axis in longevity | Full Text | References | PDF (19.5 MB) | EPUB | Supplemental
  • 1901 Views
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Open Access
Article
CobB-mediated deacetylation of the chaperone CesA regulates Escherichia coli O157:H7 virulence
Linxing Li, Bin Yang, Jing Wang, Yi Wei, Binbin Xiang, Yutao Liu, Pan Wu, Wanwu Li, Yanling Wang, Xinyu Zhao, Jingliang Qin, Miaomiao Liu, Ruiying Liu, Guozhen Ma, Tian Fu, Min Wang & Bin Liu
Article: 2331435
Published online: 19 Mar 2024
AbstractforCobB-mediated deacetylation of the chaperone CesA regulates Escherichia coli O157:H7 virulence | Full Text | References | PDF (3.1 MB) | EPUB | Supplemental
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Review

Review Article
Breaking the barriers: the role of gut homeostasis in Metabolic-Associated Steatotic Liver Disease (MASLD)
Raquel Benedé-Ubieto, Francisco Javier Cubero & Yulia A. Nevzorova
Article: 2331460
Published online: 21 Mar 2024
AbstractforBreaking the barriers: the role of gut homeostasis in Metabolic-Associated Steatotic Liver Disease (MASLD) | Full Text | References | PDF (5.1 MB) | EPUB | Supplemental
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Research Paper

Article
Using a human colonoid-derived monolayer to study bacteriophage translocation
Huu Thanh Le, Alicia Fajardo Lubian, Bethany Bowring, David van der Poorten, Jonathan Iredell, Jacob George, Carola Venturini, Golo Ahlenstiel & Scott Read
Article: 2331520
Published online: 22 Mar 2024
AbstractforUsing a human colonoid-derived monolayer to study bacteriophage translocation | Full Text | References | PDF (3 MB) | EPUB | Supplemental
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Brief Report

Brief Report
Gastrointestinal signals in supplemented media reveal a role in adherence for the Shigella flexneri sap autotransporter gene
Yrvin León, Raphael Honigsberg, David A. Rasko & Christina S. Faherty
Article: 2331985
Published online: 28 Mar 2024
AbstractforGastrointestinal signals in supplemented media reveal a role in adherence for the Shigella flexneri sap autotransporter gene | Full Text | References | PDF (698.1 KB) | EPUB
  • 624 Views
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Research Paper

Article
Pathogen-specific alterations in intestinal microbiota precede urinary tract infections in preterm infants: a longitudinal case-control study
Luyang Hong, Yihuang Huang, Junyan Han, Shujuan Li, Lan Zhang, Qi Zhou, Xincheng Cao, Weiyin Yu, Xinhui Guo, Yi Yang, Yufeng Zhou, Weili Yan, Shangyu Hong, Siyuan Jiang & Yun Cao
Article: 2333413
Published online: 01 Apr 2024
AbstractforPathogen-specific alterations in intestinal microbiota precede urinary tract infections in preterm infants: a longitudinal case-control study | Full Text | References | PDF (3.9 MB) | EPUB | Supplemental
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Commentary and Views

Comment
From animal models to gut-on-chip: the challenging journey to capture inter-individual variability in chronic digestive disorders
Aicha Kriaa, Vincent Mariaule, Charlotte De Rudder, Amin Jablaoui, Harry Sokol, Paul Wilmes, Emmanuelle Maguin & Moez Rhimi
Article: 2333434
Published online: 27 Mar 2024
AbstractforFrom animal models to gut-on-chip: the challenging journey to capture inter-individual variability in chronic digestive disorders | Full Text | References | PDF (601.8 KB) | EPUB
  • 606 Views
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Research Paper

Article
Oral pathobiont Klebsiella chaperon usher pili provide site-specific adaptation for the inflamed gut mucosa
Yijie Guo, Sho Kitamoto, Gustavo Caballero-Flores, Yeji Kim, Daisuke Watanabe, Kohei Sugihara, Gabriel Núñez, Christopher J. Alteri, Naohiro Inohara & Nobuhiko Kamada
Article: 2333463
Published online: 28 Mar 2024
AbstractforOral pathobiont Klebsiella chaperon usher pili provide site-specific adaptation for the inflamed gut mucosa | Full Text | References | PDF (2.3 MB) | EPUB | Supplemental
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Open Access
Article
Transplant of microbiota from Crohn’s disease patients to germ-free mice results in colitis
Irshad Ali Sheikh, Jared Bianchi-Smak, Daniel Laubitz, Gabriele Schiro, Monica T. Midura-Kiela, David G. Besselsen, Gayatri Vedantam, Sara Jarmakiewicz, Rafał Filip, Fayez K. Ghishan, Nan Gao & Pawel R. Kiela
Article: 2333483
Published online: 27 Mar 2024
AbstractforTransplant of microbiota from Crohn’s disease patients to germ-free mice results in colitis | Full Text | References | PDF (12.6 MB) | EPUB | Supplemental
  • 1658 Views
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Article
The effects of antibiotic exposures on the gut resistome during hematopoietic cell transplantation in children
Sarah M. Heston, Rebecca R. Young, Kirsten Jenkins, Paul L. Martin, Andre Stokhuyzen, Doyle V. Ward, Shakti K. Bhattarai, Vanni Bucci, Mehreen Arshad, Nelson J. Chao, Patrick C. Seed & Matthew S. Kelly
Article: 2333748
Published online: 30 Mar 2024
AbstractforThe effects of antibiotic exposures on the gut resistome during hematopoietic cell transplantation in children | Full Text | References | PDF (5.1 MB) | EPUB | Supplemental
  • 817 Views
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Article
Fusobacterium nucleatum induces chemoresistance in colorectal cancer by inhibiting pyroptosis via the Hippo pathway
Ni Wang, Lu Zhang, Xiao-Xu Leng, Yi-Le Xie, Zi-Ran Kang, Li-Cong Zhao, Lin-Hong Song, Cheng-Bei Zhou & Jing-Yuan Fang
Article: 2333790
Published online: 27 Mar 2024
AbstractforFusobacterium nucleatum induces chemoresistance in colorectal cancer by inhibiting pyroptosis via the Hippo pathway | Full Text | References | PDF (7.5 MB) | EPUB | Supplemental
  • 1156 Views
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Article
Intestinal microbiota modulates neuroinflammatory response and brain injury after neonatal hypoxia-ischemia
Alexander Drobyshevsky, Sylvia Synowiec, Ivan Goussakov, Rafael Fabres, Jing Lu & Michael Caplan
Article: 2333808
Published online: 27 Mar 2024
AbstractforIntestinal microbiota modulates neuroinflammatory response and brain injury after neonatal hypoxia-ischemia | Full Text | References | PDF (4.3 MB) | EPUB | Supplemental
  • 710 Views
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Open Access
Article
Sialic acid-based probiotic intervention in lactating mothers improves the neonatal gut microbiota and immune responses by regulating sialylated milk oligosaccharide synthesis via the gut–breast axis
Yushuang Wang, Binqi Rui, Xiaolei Ze, Yujia Liu, Da Yu, Yinhui Liu, Zhi Li, Yu Xi, Xixi Ning, Zengjie Lei, Jieli Yuan, Liang Li, Xuguang Zhang, Wenzhe Li, Yanjie Deng, Jingyu Yan & Ming Li
Article: 2334967
Published online: 17 Apr 2024
AbstractforSialic acid-based probiotic intervention in lactating mothers improves the neonatal gut microbiota and immune responses by regulating sialylated milk oligosaccharide synthesis via the gut–breast axis | Full Text | References | PDF (19.3 MB) | EPUB | Supplemental
  • 1122 Views
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Article
Gastrointestinal microbiota and metabolites possibly contribute to distinct pathogenicity of SARS-CoV-2 proto or its variants in rhesus monkeys
Hongyu Chen, Junbin Wang, Kaiyun Ding, Jingwen Xu, Yun Yang, Cong Tang, Yanan Zhou, Wenhai Yu, Haixuan Wang, Qing Huang, Bai Li, Dexuan Kuang, Daoju Wu, Zhiwu Luo, Jiahong Gao, Yuan Zhao, Jiansheng Liu, Xiaozhong Peng, Shuaiyao Lu & Hongqi Liu
Article: 2334970
Published online: 02 Apr 2024
AbstractforGastrointestinal microbiota and metabolites possibly contribute to distinct pathogenicity of SARS-CoV-2 proto or its variants in rhesus monkeys | Full Text | References | PDF (3.3 MB) | EPUB | Supplemental
  • 668 Views
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Article
Human gut microbiota and their production of endocannabinoid-like mediators are directly affected by a dietary oil
Charlène Roussel, Mathilde Sola, Jacob Lessard-Lord, Nayudu Nallabelli, Pamela Généreux, Camille Cavestri, Oumaima Azeggouar Wallen, Rosaria Villano, Frédéric Raymond, Nicolas Flamand, Cristoforo Silvestri & Vincenzo Di Marzo
Article: 2335879
Published online: 02 May 2024
AbstractforHuman gut microbiota and their production of endocannabinoid-like mediators are directly affected by a dietary oil | Full Text | References | PDF (5.1 MB) | EPUB | Supplemental
  • 569 Views
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Article
Integrative analysis with microbial modelling and machine learning uncovers potential alleviators for ulcerative colitis
Jinlin Zhu, Jialin Yin, Jing Chen, Mingyi Hu, Wenwei Lu, Hongchao Wang, Hao Zhang & Wei Chen
Article: 2336877
Published online: 02 Apr 2024
AbstractforIntegrative analysis with microbial modelling and machine learning uncovers potential alleviators for ulcerative colitis | Full Text | References | PDF (6.7 MB) | EPUB | Supplemental
  • 1135 Views
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Article
Cognitive behavioral and mindfulness with daily exercise intervention is associated with changes in intestinal microbial taxa and systemic inflammation in patients with Crohn’s disease
Karny Ilan, Yair Motro, Anna Nemirovsky, Doron Schwartz, Ganit Goren, Ruslan Sergienko, Dan Greenberg, Vered Slonim-Nevo, Orly Sarid, Michael Friger, Shirley Regev, Shmuel Odes, Jacob Moran-Gilad, Alon Monsonego &  on behalf of the Israeli IBD Research Nucleus (IIRN)
Article: 2337269
Published online: 09 Apr 2024
AbstractforCognitive behavioral and mindfulness with daily exercise intervention is associated with changes in intestinal microbial taxa and systemic inflammation in patients with Crohn’s disease | Full Text | References | PDF (2.3 MB) | EPUB | Supplemental
  • 834 Views
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Review

Review Article
New treatment approaches for Clostridioides difficile infections: alternatives to antibiotics and fecal microbiota transplantation
Tomaž Bratkovič, Abida Zahirović, Maruša Bizjak, Maja Rupnik, Borut Štrukelj & Aleš Berlec
Article: 2337312
Published online: 09 Apr 2024
AbstractforNew treatment approaches for Clostridioides difficile infections: alternatives to antibiotics and fecal microbiota transplantation | Full Text | References | PDF (3.4 MB) | EPUB
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Brief Report

Brief Report
A high fiber diet or supplementation with Lactococcus lactis subspecies cremoris to pregnant mice confers protection against intestinal injury in adult offspring
Maria E. Barbian, Joshua A. Owens, Crystal R. Naudin, Patricia Denning, Ravi M. Patel & Rheinallt M. Jones
Article: 2337317
Published online: 15 Apr 2024
AbstractforA high fiber diet or supplementation with Lactococcus lactis subspecies cremoris to pregnant mice confers protection against intestinal injury in adult offspring | Full Text | References | PDF (2.8 MB) | EPUB
  • 601 Views
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Research Paper

Article
Multi-strain probiotics during pregnancy in women with obesity influence infant gut microbiome development: results from a randomized, double-blind placebo-controlled study
Sofie Ingdam Halkjær, Malene Refslund Danielsen, Victoria E. de Knegt, Lee O’Brien Andersen, Christen Rune Stensvold, Henrik Vedel Nielsen, Hengameh Chloé Mirsepasi-Lauridsen, Karen Angeliki Krogfelt, Dina Cortes & Andreas Munk Petersen
Article: 2337968
Published online: 09 Apr 2024
AbstractforMulti-strain probiotics during pregnancy in women with obesity influence infant gut microbiome development: results from a randomized, double-blind placebo-controlled study | Full Text | References | PDF (6.9 MB) | EPUB | Supplemental
  • 1314 Views
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Article
A randomized double-blind, placebo-controlled trial to evaluate the safety and efficacy of live Bifidobacterium longum CECT 7347 (ES1) and heat-treated Bifidobacterium longum CECT 7347 (HT-ES1) in participants with diarrhea-predominant irritable bowel syndrome
S Srivastava, U Basak, M Naghibi, V Vijayakumar, R Parihar, J Patel, PS Jadon, A Pandit, RR Dargad, S Khanna, S Kumar & R Day
Article: 2338322
Published online: 17 Apr 2024
AbstractforA randomized double-blind, placebo-controlled trial to evaluate the safety and efficacy of live Bifidobacterium longum CECT 7347 (ES1) and heat-treated Bifidobacterium longum CECT 7347 (HT-ES1) in participants with diarrhea-predominant irritable bowel syndrome | Full Text | References | PDF (2.3 MB) | EPUB | Supplemental
  • 1566 Views
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Brief Report

Brief Report
Prebiotic utilisation provides Lactiplantibacillus plantarum a competitive advantage in vitro, but is not reflected by an increased intestinal fitness
Jori Fuhren, Markus Schwalbe, Jos Boekhorst, Christiane Rösch, Henk A. Schols & Michiel Kleerebezem
Article: 2338946
Published online: 24 Apr 2024
AbstractforPrebiotic utilisation provides Lactiplantibacillus plantarum a competitive advantage in vitro, but is not reflected by an increased intestinal fitness | Full Text | References | PDF (1.4 MB) | EPUB | Supplemental
  • 647 Views
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Review

Review Article
Akkermansia muciniphila: a deworming partner independent of type 2 immunity
Jiaqi Wang, Xiufeng Zhao, Xianhe Li & Xuemin Jin
Article: 2338947
Published online: 08 May 2024
AbstractforAkkermansia muciniphila: a deworming partner independent of type 2 immunity | Full Text | References | PDF (1 MB) | EPUB
  • 267 Views
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Research Paper

Article
Intestinal carbapenem-resistant Klebsiella pneumoniae undergoes complex transcriptional reprogramming following immune activation
Clement David, Aleksander Czauderna, Liqing Cheng, Marion Lagune, Hea-Jin Jung, Sohn G. Kim, Eric G. Pamer, Julien Prados, Liang Chen & Simone Becattini
Article: 2340486
Published online: 24 Apr 2024
AbstractforIntestinal carbapenem-resistant Klebsiella pneumoniae undergoes complex transcriptional reprogramming following immune activation | Full Text | References | PDF (7.3 MB) | EPUB | Supplemental
  • 885 Views
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Open Access
Article
Effects of Prevotella copri on insulin, gut microbiota and bile acids
Jiatai Gong, Qianjin Zhang, Ruizhi Hu, Xizi Yang, Chengkun Fang, Liping Yao, Jing Lv, Long Wang, Mingkun Shi, Wentao Zhang, Siqi Ma, Hongkun Xiang, Hongfu Zhang, De-Xing Hou, Yulong Yin, Jianhua He, Lijun Peng & Shusong Wu
Article: 2340487
Published online: 16 Apr 2024
AbstractforEffects of Prevotella copri on insulin, gut microbiota and bile acids | Full Text | References | PDF (4.9 MB) | EPUB | Supplemental
  • 1371 Views
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Review

Review Article
Sweet, bloody consumption – what we eat and how it affects vascular ageing, the BBB and kidney health in CKD
Angelina Schwarz, Leah Hernandez, Samsul Arefin, Elisa Sartirana, Anna Witasp, Annika Wernerson, Peter Stenvinkel & Karolina Kublickiene
Article: 2341449
Published online: 30 Apr 2024
AbstractforSweet, bloody consumption – what we eat and how it affects vascular ageing, the BBB and kidney health in CKD | Full Text | References | PDF (2 MB) | EPUB
  • 799 Views
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Research Paper

Article
Dietary fiber guar gum-induced shift in gut microbiota metabolism and intestinal immune activity enhances susceptibility to colonic inflammation
Devendra Paudel, Divek V. T. Nair, Sangshan Tian, Fuhua Hao, Umesh K. Goand, Grace Joseph, Eleni Prodes, Zhi Chai, Chloé E.M. Robert, Benoit Chassaing, Andrew D. Patterson & Vishal Singh
Article: 2341457
Published online: 17 Apr 2024
AbstractforDietary fiber guar gum-induced shift in gut microbiota metabolism and intestinal immune activity enhances susceptibility to colonic inflammation | Full Text | References | PDF (6.3 MB) | EPUB | Supplemental
  • 1975 Views
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Open Access
Article
Proton pump inhibitors increase the risk of carbapenem-resistant Enterobacteriaceae colonization by facilitating the transfer of antibiotic resistance genes among bacteria in the gut microbiome
Imchang Lee, Jae-Won Jo, Heung-Jeong Woo, Ki Tae Suk, Seung Soon Lee & Bong-Soo Kim
Article: 2341635
Published online: 18 Apr 2024
AbstractforProton pump inhibitors increase the risk of carbapenem-resistant Enterobacteriaceae colonization by facilitating the transfer of antibiotic resistance genes among bacteria in the gut microbiome | Full Text | References | PDF (7.2 MB) | EPUB | Supplemental
  • 827 Views
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Article
Genetic and microbial determinants of azoxymethane-induced colorectal tumor susceptibility in Collaborative Cross mice and their implication in human cancer
Dan Li, Chenhan Zhong, Mengyuan Yang, Li He, Hang Chang, Ning Zhu, Susan E Celniker, David W Threadgill, Antoine M Snijders, Jian-Hua Mao & Ying Yuan
Article: 2341647
Published online: 24 Apr 2024
AbstractforGenetic and microbial determinants of azoxymethane-induced colorectal tumor susceptibility in Collaborative Cross mice and their implication in human cancer | Full Text | References | PDF (11.8 MB) | EPUB | Supplemental
  • 527 Views
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Review

Review Article
Bacterial membrane vesicles in the pathogenesis and treatment of inflammatory bowel disease
Chinasa Valerie Olovo, Dickson Kofi Wiredu Ocansey, Ying Ji, Xinxiang Huang & Min Xu
Article: 2341670
Published online: 26 Apr 2024
AbstractforBacterial membrane vesicles in the pathogenesis and treatment of inflammatory bowel disease | Full Text | References | PDF (9.8 MB) | EPUB
  • 738 Views
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Review Article
An emerging strategy: probiotics enhance the effectiveness of tumor immunotherapy via mediating the gut microbiome
Shuaiming Jiang, Wenyao Ma, Chenchen Ma, Zeng Zhang, Wanli Zhang & Jiachao Zhang
Article: 2341717
Published online: 08 May 2024
AbstractforAn emerging strategy: probiotics enhance the effectiveness of tumor immunotherapy via mediating the gut microbiome | Full Text | References | PDF (4.2 MB) | EPUB
  • 367 Views
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Research Paper

Article
The gut microbe pair of Oribacterium sp. GMB0313 and Ruminococcus sp. GMB0270 confers complete protection against SARS-CoV-2 infection by activating CD8+ T cell-mediated immunity
Mingda Wang, Enkhchimeg Lkhagva, Sura Kim, Chongkai Zhai, Md Minarul Islam, Hyeon J. Kim & Seong-Tshool Hong
Article: 2342497
Published online: 18 Apr 2024
AbstractforThe gut microbe pair of Oribacterium sp. GMB0313 and Ruminococcus sp. GMB0270 confers complete protection against SARS-CoV-2 infection by activating CD8+ T cell-mediated immunity | Full Text | References | PDF (7 MB) | EPUB | Supplemental
  • 959 Views
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Article
Comparison of fidaxomicin, thuricin CD, vancomycin and nisin highlights the narrow spectrum nature of thuricin CD
L. Walsh, A. Lavelle, PM O’Connor, C. Hill & R. P. Ross
Article: 2342583
Published online: 09 May 2024
AbstractforComparison of fidaxomicin, thuricin CD, vancomycin and nisin highlights the narrow spectrum nature of thuricin CD | Full Text | References | PDF (3.7 MB) | EPUB
  • 289 Views
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Article
Recipient microbiome-related features predicting metabolic improvement following fecal microbiota transplantation in adults with severe obesity and metabolic syndrome: a secondary analysis of a phase 2 clinical trial
Zhengxiao Zhang, Valentin Mocanu, Edward C. Deehan, Naomi Hotte, Yuanyuan Zhu, Shanshan Wei, Dina H. Kao, Shahzeer Karmali, Daniel W. Birch, Jens Walter & Karen L. Madsen
Article: 2345134
Published online: 29 Apr 2024
AbstractforRecipient microbiome-related features predicting metabolic improvement following fecal microbiota transplantation in adults with severe obesity and metabolic syndrome: a secondary analysis of a phase 2 clinical trial | Full Text | References | PDF (1.3 MB) | EPUB | Supplemental
  • 927 Views
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Article
Efficacy of an inulin-based treatment on intestinal colonization by multidrug-resistant E. coli: insight into the mechanism of action
Murad Ishnaiwer, Quentin Le Bastard, Maxime Naour, Michal Zeman, Eric Dailly, Emmanuel Montassier, Eric Batard & Michel Dion
Article: 2347021
Published online: 29 Apr 2024
AbstractforEfficacy of an inulin-based treatment on intestinal colonization by multidrug-resistant E. coli: insight into the mechanism of action | Full Text | References | PDF (3 MB) | EPUB | Supplemental
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Article
M2 macrophages participate in ILC2 activation induced by Helicobacter pylori infection
Ruyi Peng, Canxia Xu, Linfang Zhang, Xiaoming Liu, Dongzi Peng, Xingcen Chen, Deliang Liu & Rong Li
Article: 2347025
Published online: 01 May 2024
AbstractforM2 macrophages participate in ILC2 activation induced by Helicobacter pylori infection | Full Text | References | PDF (4.2 MB) | EPUB | Supplemental
  • 340 Views
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Article
Metabolome-associated psychological comorbidities improvement in irritable bowel syndrome patients receiving a probiotic
Francois-Pierre Martin, Ornella Cominetti, Bernard Berger, Séverine Combremont, Julien Marquis, Guoxiang Xie, Wei Jia, Maria Inés Pinto-Sanchez, Premysl Bercik & Gabriela Bergonzelli
Article: 2347715
Published online: 08 May 2024
AbstractforMetabolome-associated psychological comorbidities improvement in irritable bowel syndrome patients receiving a probiotic | Full Text | References | PDF (2.2 MB) | EPUB | Supplemental
  • 888 Views
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Article
Microbiota-derived I3A protects the intestine against radiation injury by activating AhR/IL-10/Wnt signaling and enhancing the abundance of probiotics
Li-Wei Xie, Shang Cai, Hai-Yan Lu, Feng-Ling Tang, Rui-Qiu Zhu, Ye Tian & Ming Li
Article: 2347722
Published online: 05 May 2024
AbstractforMicrobiota-derived I3A protects the intestine against radiation injury by activating AhR/IL-10/Wnt signaling and enhancing the abundance of probiotics | Full Text | References | PDF (9.5 MB) | EPUB | Supplemental
  • 620 Views
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Article
Christensenella strain resources, genomic/metabolomic profiling, and association with host at species level
Xin-Wei Sun, Hao-Jie Huang, Xiao-Meng Wang, Rui-Qi Wei, Han-Yu Niu, Hao-Yu Chen, Man Luo, Rashidin Abdugheni, Yu-Lin Wang, Feng-Lan Liu, He Jiang, Chang Liu & Shuang-Jiang Liu
Article: 2347725
Published online: 09 May 2024
AbstractforChristensenella strain resources, genomic/metabolomic profiling, and association with host at species level | Full Text | References | PDF (7.2 MB) | EPUB | Supplemental
  • 469 Views
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Open Access

Brief Report

Brief Report
Human gut-associated Bifidobacterium species salvage exogenous indole, a uremic toxin precursor, to synthesize indole-3-lactic acid via tryptophan
Cheng Chung Yong, Takuma Sakurai, Hiroki Kaneko, Ayako Horigome, Eri Mitsuyama, Aruto Nakajima, Toshihiko Katoh, Mikiyasu Sakanaka, Takaaki Abe, Jin-Zhong Xiao, Miyuki Tanaka, Toshitaka Odamaki & Takane Katayama
Article: 2347728
Published online: 05 May 2024
AbstractforHuman gut-associated Bifidobacterium species salvage exogenous indole, a uremic toxin precursor, to synthesize indole-3-lactic acid via tryptophan | Full Text | References | PDF (772.2 KB) | EPUB | Supplemental
  • 970 Views
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Research Paper

Article
Prevotella copri exhausts intrinsic indole-3-pyruvic acid in the host to promote breast cancer progression: inactivation of AMPK via UHRF1-mediated negative regulation
Jiyan Su, Xiaojie Lin, Dan Li, Chunmin Yang, Shumei Lv, Xiaohong Chen, Xiujuan Yang, Botao Pan, Rui Xu, Liping Ren, Yanfang Zhang, Yizhen Xie, Qianjun Chen & Chenglai Xia
Article: 2347757
Published online: 21 May 2024
AbstractforPrevotella copri exhausts intrinsic indole-3-pyruvic acid in the host to promote breast cancer progression: inactivation of AMPK via UHRF1-mediated negative regulation | Full Text | References | PDF (9 MB) | EPUB | Supplemental
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Article
Commensal microbiota-derived metabolite agmatine triggers inflammation to promote colorectal tumorigenesis
Yu Lu, Aoxi Cui & Xiaobo Zhang
Article: 2348441
Published online: 05 May 2024
AbstractforCommensal microbiota-derived metabolite agmatine triggers inflammation to promote colorectal tumorigenesis | Full Text | References | PDF (4.6 MB) | EPUB | Supplemental
  • 624 Views
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Article
Spatial transcriptomic analysis reveals local effects of intratumoral fusobacterial infection on DNA damage and immune signaling in rectal cancer
William P. Duggan, Batuhan Kisakol, Ina Woods, Mohammedreza Azimi, Heiko Dussmann, Joanna Fay, Tony O’Grady, Barry Maguire, Ian S. Reynolds, Manuela Salvucci, Daniel J. Slade, Deborah A. McNamara, John P. Burke & Jochen H.M. Prehn
Article: 2350149
Published online: 06 May 2024
AbstractforSpatial transcriptomic analysis reveals local effects of intratumoral fusobacterial infection on DNA damage and immune signaling in rectal cancer | Full Text | References | PDF (8.1 MB) | EPUB | Supplemental
  • 582 Views
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Article
Meta-analysis identifying gut microbial biomarkers of Qinghai-Tibet Plateau populations and the functionality of microbiota-derived butyrate in high-altitude adaptation
Hongwen Zhao, Longjie Sun, Jiali Liu, Bin Shi, Yaopeng Zhang, Ci-Ren Qu-Zong, Tsechoe Dorji, Tieyu Wang, Hongli Yuan & Jinshui Yang
Article: 2350151
Published online: 07 May 2024
AbstractforMeta-analysis identifying gut microbial biomarkers of Qinghai-Tibet Plateau populations and the functionality of microbiota-derived butyrate in high-altitude adaptation | Full Text | References | PDF (13.4 MB) | EPUB | Supplemental
  • 444 Views
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Article
Biofilms and core pathogens shape the tumor microenvironment and immune phenotype in colorectal cancer
Lasse Kvich, Blaine Gabriel Fritz, Henrike Zschach, Thilde Terkelsen, Hans Raskov, Kathrine Høst-Rasmussen, Morten Ragn Jakobsen, Alexandra Gabriella Gheorghe, Ismail Gögenur & Thomas Bjarnsholt
Article: 2350156
Published online: 10 May 2024
AbstractforBiofilms and core pathogens shape the tumor microenvironment and immune phenotype in colorectal cancer | Full Text | References | PDF (5.4 MB) | EPUB | Supplemental
  • 536 Views
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Article
Spatio-temporal dynamics of the human small intestinal microbiome and its response to a synbiotic
Ran An, Ellen Wilms, Jacoline Gerritsen, Hye Kyong Kim, Celia Seguí Pérez, Isolde Besseling-van der Vaart, Daisy M.A.E. Jonkers, Ger T. Rijkers, Willem M. de Vos, Ad A.M. Masclee, Erwin G. Zoetendal, Freddy J. Troost & Hauke Smidt
Article: 2350173
Published online: 13 May 2024
AbstractforSpatio-temporal dynamics of the human small intestinal microbiome and its response to a synbiotic | Full Text | References | PDF (1.4 MB) | EPUB | Supplemental
  • 404 Views
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Article
Ethanolamine enhances adhesion, promotes microcompartment formation, and modulates gene expression in Levilactobacillus brevis ATCC 14869
Polycronis P. Akouris, Gerrit A. Stuivenberg, John A. Chmiel, Wongsakorn Kiattiburut, Annabel Poon, Gregor Reid & Jeremy P. Burton
Article: 2350778
Published online: 08 May 2024
AbstractforEthanolamine enhances adhesion, promotes microcompartment formation, and modulates gene expression in Levilactobacillus brevis ATCC 14869 | Full Text | References | PDF (4.9 MB) | EPUB
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Review

Review Article
Ecological insights into hematopoiesis regulation: unraveling the influence of gut microbiota
Kaiwen Zheng, Zhifeng Wei & Wei Li
Article: 2350784
Published online: 10 May 2024
AbstractforEcological insights into hematopoiesis regulation: unraveling the influence of gut microbiota | Full Text | References | PDF (1.5 MB) | EPUB
  • 253 Views
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Review Article
Diet-microbiota associations in gastrointestinal research: a systematic review
Kerith Duncanson, Georgina Williams, Emily C. Hoedt, Clare E. Collins, Simon Keely & Nicholas J. Talley
Article: 2350785
Published online: 09 May 2024
AbstractforDiet-microbiota associations in gastrointestinal research: a systematic review | Full Text | References | PDF (999.4 KB) | EPUB | Supplemental
  • 867 Views
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Review Article
Microbiota transplantation in restoring cesarean-related infant dysbiosis: a new frontier
Sina Liu, Xiaoxia Luo, Lepeng Zhou, Ri-hua Xie & Yan He
Article: 2351503
Published online: 15 May 2024
AbstractforMicrobiota transplantation in restoring cesarean-related infant dysbiosis: a new frontier | Full Text | References | PDF (681.6 KB) | EPUB
  • 169 Views
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Review Article

Review Article
New methods to unveil host-microbe interaction mechanisms along the microbiota-gut-brain-axis
Habibullah Moradian, Tristan Gabriel, Mathilde Barrau, Xavier Roblin & Stéphane Paul
Article: 2351520
Published online: 08 May 2024
AbstractforNew methods to unveil host-microbe interaction mechanisms along the microbiota-gut-brain-axis | Full Text | References | PDF (1.4 MB) | EPUB
  • 563 Views
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Research Paper

Article
Prevotella copri promotes vascular calcification via lipopolysaccharide through activation of NF-κB signaling pathway
Qing-Yun Hao, Jing Yan, Jin-Tao Wei, Yu-Hong Zeng, Li-Yun Feng, Dong-Dong Que, Shi-Chao Li, Jing-Bin Guo, Ying Fan, Yun-Fa Ding, Xiu-Li Zhang, Ping-Zhen Yang, Jing-Wei Gao & Ze-Hua Li
Article: 2351532
Published online: 10 May 2024
AbstractforPrevotella copri promotes vascular calcification via lipopolysaccharide through activation of NF-κB signaling pathway | Full Text | References | PDF (5.2 MB) | EPUB | Supplemental
  • 551 Views
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Article
Cultivated Enterococcus faecium B6 from children with obesity promotes nonalcoholic fatty liver disease by the bioactive metabolite tyramine
Jia Wei, Jiayou Luo, Fei Yang, Xiangling Feng, Ming Zeng, Wen Dai, Xiongfeng Pan, Yue Yang, Yamei Li, Yamei Duan, Xiang Xiao, Ping Ye, Zhenzhen Yao, Yixu Liu, Zhihang Huang, Jiajia Zhang, Yan Zhong, Ningan Xu & Miyang Luo
Article: 2351620
Published online: 13 May 2024
AbstractforCultivated Enterococcus faecium B6 from children with obesity promotes nonalcoholic fatty liver disease by the bioactive metabolite tyramine | Full Text | References | PDF (9.5 MB) | EPUB | Supplemental
  • 326 Views
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Review Article

Review Article
The neonatal gut microbiome and global health
Pinaki Panigrahi
Article: 2352175
Published online: 14 May 2024
AbstractforThe neonatal gut microbiome and global health | Full Text | References | PDF (1.4 MB) | EPUB
  • 268 Views
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Research Paper

Article
Two extracellular α-arabinofuranosidases are required for cereal-derived arabinoxylan metabolism by Bifidobacterium longum subsp. longum
Lisa Friess, Francesca Bottacini, Fionnuala M. McAuliffe, Ian J. O’Neill, Paul D. Cotter, Ciaran Lee, Jose Munoz-Munoz & Douwe van Sinderen
Article: 2353229
Published online: 16 May 2024
AbstractforTwo extracellular α-arabinofuranosidases are required for cereal-derived arabinoxylan metabolism by Bifidobacterium longum subsp. longum | Full Text | References | PDF (4.8 MB) | EPUB | Supplemental
  • 257 Views
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Article
Fecal transplant from vaginally seeded infants decreases intraabdominal adiposity in mice
Sivaranjani Namasivayam, Curtis Tilves, Hua Ding, Shaoguang Wu, Jada C Domingue, Camilo Ruiz-Bedoya, Ankit Shah, Eric Bohrnsen, Benjamin Schwarz, Mickayla Bacorn, Qing Chen, Shira Levy, Maria Gloria Dominguez Bello, Sanjay K Jain, Cynthia L Sears, Noel T Mueller & Suchitra K Hourigan
Article: 2353394
Published online: 14 May 2024
AbstractforFecal transplant from vaginally seeded infants decreases intraabdominal adiposity in mice | Full Text | References | PDF (2.5 MB) | EPUB | Supplemental
  • 440 Views
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Review

Review Article
Host-microbiota interaction in intestinal stem cell homeostasis
Haiqin Wu, Chunlong Mu, Laipeng Xu, Kaifan Yu, Le Shen & Weiyun Zhu
Article: 2353399
Published online: 17 May 2024
AbstractforHost-microbiota interaction in intestinal stem cell homeostasis | Full Text | References | PDF (4.3 MB) | EPUB
  • 163 Views
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Review Article
Novel approaches in IBD therapy: targeting the gut microbiota-bile acid axis
Yinping Pan, Haojie Zhang, Minghui Li, Tingjing He, Sihao Guo, Liancai Zhu, Jun Tan & Bochu Wang
Article: 2356284
Published online: 20 May 2024
AbstractforNovel approaches in IBD therapy: targeting the gut microbiota-bile acid axis | Full Text | References | PDF (5.6 MB) | EPUB
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Research Article

Article
Two-component system RstAB promotes the pathogenicity of adherent-invasive Escherichia coli in response to acidic conditions within macrophages
Ting Yao, Xingmei Liu, Dan Li, Yu Huang, Wen Yang, Ruiying Liu, Qian Wang, Xueping Li, Jiarui Zhou, Chen Jin, Yutao Liu, Bin Yang & Yu Pang
Article: 2356642
Published online: 20 May 2024
AbstractforTwo-component system RstAB promotes the pathogenicity of adherent-invasive Escherichia coli in response to acidic conditions within macrophages | Full Text | References | PDF (3.8 MB) | EPUB
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