Gut Microbes, Volume 11, Issue 4 (2020)

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Gut Microbes, Volume 11, Issue 4 (2020)

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Commentary and Views

Letter to editor
Bo Yang
Pages: 633-634
Published online: 01 Mar 2020
AbstractforLetter to editor | Full Text | References | PDF (237.2 KB) | EPUB
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Review

The canine gastrointestinal microbiota: early studies and research frontiers
Zongyu Huang, Zhiyuan Pan, Ruifu Yang, Yujing Bi & Xiaohui Xiong
Pages: 635-654
Published online: 28 Jan 2020
AbstractforThe canine gastrointestinal microbiota: early studies and research frontiers | Full Text | References | PDF (1.8 MB) | EPUB
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The mycobiota of the human body: a spark can start a prairie fire
Di Zhang, Ying Wang, Sunan Shen, Yayi Hou, Yugen Chen & Tingting Wang
Pages: 655-679
Published online: 09 Mar 2020
AbstractforThe mycobiota of the human body: a spark can start a prairie fire | Full Text | References | PDF (4.6 MB) | EPUB
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Interactions of commensal and pathogenic microorganisms with the mucus layer in the colon
Rui Cai, Chen Cheng, Jianwei Chen, Xiaoqiang Xu, Chao Ding & Bing Gu
Pages: 680-690
Published online: 29 Mar 2020
AbstractforInteractions of commensal and pathogenic microorganisms with the mucus layer in the colon | Full Text | References | PDF (1.7 MB) | EPUB
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Gut bacteria affect the tumoral immune milieu: distorting the efficacy of immunotherapy or not？
Pu Xiaoyu, Ge Chao, Dong Lihua & Chang Pengyu
Pages: 691-705
Published online: 27 Mar 2020
AbstractforGut bacteria affect the tumoral immune milieu: distorting the efficacy of immunotherapy or not？ | Full Text | References | PDF (2.2 MB) | EPUB
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Research Paper/Report

Article
Temporal and region-specific effects of sleep fragmentation on gut microbiota and intestinal morphology in Sprague Dawley rats
Judy Triplett, David Ellis, Amber Braddock, Erin Roberts, Katherine Ingram, Eric Perez, Amanda Short, Dominique Brown, Victoria Hutzley, Chelsey Webb, Armando Soto & Victor Chan
Pages: 706-720
Published online: 10 Jan 2020
AbstractforTemporal and region-specific effects of sleep fragmentation on gut microbiota and intestinal morphology in Sprague Dawley rats | Full Text | References | PDF (3.7 MB) | EPUB | Supplemental
  • 2644 Views
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Article
Dietary prophage inducers and antimicrobials: toward landscaping the human gut microbiome
Lance Boling, Daniel A. Cuevas, Juris A. Grasis, Han Suh Kang, Ben Knowles, Kyle Levi, Heather Maughan, Katelyn McNair, Maria Isabel Rojas, Savannah E. Sanchez, Cameron Smurthwaite & Forest Rohwer
Pages: 721-734
Published online: 13 Jan 2020
AbstractforDietary prophage inducers and antimicrobials: toward landscaping the human gut microbiome | Full Text | References | PDF (2.3 MB) | EPUB | Supplemental
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Article
Antidepressant treatment with fluoxetine during pregnancy and lactation modulates the gut microbiome and metabolome in a rat model relevant to depression
Anouschka S Ramsteijn, Eldin Jašarević, Danielle J Houwing, Tracy L Bale & Jocelien DA Olivier
Pages: 735-753
Published online: 23 Jan 2020
AbstractforAntidepressant treatment with fluoxetine during pregnancy and lactation modulates the gut microbiome and metabolome in a rat model relevant to depression | Full Text | References | PDF (2.5 MB) | EPUB | Supplemental
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Article
Continuous pre- and post-transplant exposure to a disease-associated gut microbiome promotes hyper-acute graft-versus-host disease in wild-type mice
Kate L Bowerman, Antiopi Varelias, Nancy Lachner, Rachel D Kuns, Geoffrey R Hill & Philip Hugenholtz
Pages: 754-770
Published online: 13 Jan 2020
AbstractforContinuous pre- and post-transplant exposure to a disease-associated gut microbiome promotes hyper-acute graft-versus-host disease in wild-type mice | Full Text | References | PDF (1.9 MB) | EPUB | Supplemental
  • 2692 Views
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Article
Beneficial bacteria activate type-I interferon production via the intracellular cytosolic sensors STING and MAVS
Jorge Gutierrez-Merino, Beatriz Isla, Theo Combes, Fernando Martinez-Estrada & Carlos Maluquer De Motes
Pages: 771-788
Published online: 15 Jan 2020
AbstractforBeneficial bacteria activate type-I interferon production via the intracellular cytosolic sensors STING and MAVS | Full Text | References | PDF (4 MB) | EPUB
  • 6275 Views
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Article
Gut commensal derived-valeric acid protects against radiation injuries
Yuan Li, Jiali Dong, Huiwen Xiao, Shuqin Zhang, Bin Wang, Ming Cui & Saijun Fan
Pages: 789-806
Published online: 13 Jan 2020
AbstractforGut commensal derived-valeric acid protects against radiation injuries | Full Text | References | PDF (7.9 MB) | EPUB | Supplemental
  • 6564 Views
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Article
Effects of spaceflight on the composition and function of the human gut microbiota
Zizhong Liu, Gui Luo, Ruikai Du, Weijia Sun, Jianwei Li, Haiyun Lan, Pu Chen, Xinxin Yuan, Dengchao Cao, Yuheng Li, Caizhi Liu, Shuai Liang, Xiaoyan Jin, Ruifu Yang, Yujing Bi, Yanping Han, Ping Cao, Wei Zhao, Shukuan Ling & Yingxian Li
Pages: 807-819
Published online: 10 Jan 2020
AbstractforEffects of spaceflight on the composition and function of the human gut microbiota | Full Text | References | PDF (3.4 MB) | EPUB | Supplemental
  • 3659 Views
  • 24 CrossRef citations
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Article
Helicobacter pylori antibiotic eradication coupled with a chemically defined diet in INS-GAS mice triggers dysbiosis and vitamin K deficiency resulting in gastric hemorrhage
Lisa Quinn, Alexander Sheh, Jessie L Ellis, Donald E Smith, Sarah L Booth, Xueyan Fu, Sureshkumar Muthupalani, Zhongming Ge, Dylan A Puglisi, Timothy C Wang, Tamas A Gonda, Hilda Holcombe & James G Fox
Pages: 820-841
Published online: 19 Jan 2020
AbstractforHelicobacter pylori antibiotic eradication coupled with a chemically defined diet in INS-GAS mice triggers dysbiosis and vitamin K deficiency resulting in gastric hemorrhage | Full Text | References | PDF (4.3 MB) | EPUB | Supplemental
  • 3199 Views
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Article
Prospective study reveals a microbiome signature that predicts the occurrence of post-operative enterocolitis in Hirschsprung disease (HSCR) patients
Weibing Tang, Yang Su, Chen Yuan, Yuqing Zhang, Lingling Zhou, Lei Peng, Pin Wang, Guanglin Chen, Yang Li, Hongxing Li, Zhengke Zhi, Hang Chang, Bo Hang, Jian-Hua Mao, Antoine M. Snijders & Yankai Xia
Pages: 842-854
Published online: 16 Jan 2020
AbstractforProspective study reveals a microbiome signature that predicts the occurrence of post-operative enterocolitis in Hirschsprung disease (HSCR) patients | Full Text | References | PDF (1.9 MB) | EPUB | Supplemental
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Article
Restitution of gut microbiota in Ugandan children administered with probiotics (Lactobacillus rhamnosus GG and Bifidobacterium animalis subsp. lactis BB-12) during treatment for severe acute malnutrition
Josué L. Castro-Mejía, Sinéad O’Ferrall, Łukasz Krych, Elaine O’Mahony, Hanifa Namusoke, Betty Lanyero, Witold Kot, Nicolette Nabukeera-Barungi, Kim Fleischer Michaelsen, Christian Mølgaard, Henrik Friis, Benedikte Grenov & Dennis S. Nielsen
Pages: 855-867
Published online: 20 Jan 2020
AbstractforRestitution of gut microbiota in Ugandan children administered with probiotics (Lactobacillus rhamnosus GG and Bifidobacterium animalis subsp. lactis BB-12) during treatment for severe acute malnutrition | Full Text | References | PDF (2.4 MB) | EPUB
  • 5644 Views
  • 23 CrossRef citations
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Article
Virulence gene repression promotes Listeria monocytogenes systemic infection
Rita Pombinho, Ana Vieira, Ana Camejo, Cristel Archambaud, Pascale Cossart, Sandra Sousa & Didier Cabanes
Pages: 868-881
Published online: 19 Jan 2020
AbstractforVirulence gene repression promotes Listeria monocytogenes systemic infection | Full Text | References | PDF (4.1 MB) | EPUB | Supplemental
  • 1755 Views
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Article
Lactobacillus and Pediococcus ameliorate progression of non-alcoholic fatty liver disease through modulation of the gut microbiome
Na Young Lee, Sang Jun Yoon, Dae Hee Han, Haripriya Gupta, Gi Soo Youn, Min Jea Shin, Young Lim Ham, Min Jung Kwak, Byung Yong Kim, Jeong Seok Yu, Do Yup Lee, Tae-Sik Park, Si-Hyun Park, Byoung Kook Kim, Hyun Chae Joung, In Suk Choi, Ji Taek Hong, Dong Joon Kim, Sang Hak Han & Ki Tae Suk
Pages: 882-899
Published online: 22 Jan 2020
AbstractforLactobacillus and Pediococcus ameliorate progression of non-alcoholic fatty liver disease through modulation of the gut microbiome | Full Text | References | PDF (6.7 MB) | EPUB
  • 7345 Views
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Article
Environmental and intrinsic factors shaping gut microbiota composition and diversity and its relation to metabolic health in children and early adolescents: A population-based study
Sofia Moran-Ramos, Blanca E. Lopez-Contreras, Ricardo Villarruel-Vazquez, Elvira Ocampo-Medina, Luis Macias-Kauffer, Jennifer N. Martinez-Medina, Hugo Villamil-Ramirez, Paola León-Mimila, Blanca E. Del Rio-Navarro, Isabel Ibarra-Gonzalez, Marcela Vela-Amieva, Francisco J Gomez-Perez, Rafael Velazquez-Cruz, Jorge Salmeron, Zyanya Reyes-Castillo, Carlos Aguilar-Salinas & Samuel Canizales-Quinteros
Pages: 900-917
Published online: 23 Jan 2020
AbstractforEnvironmental and intrinsic factors shaping gut microbiota composition and diversity and its relation to metabolic health in children and early adolescents: A population-based study | Full Text | References | PDF (4.1 MB) | EPUB | Supplemental
  • 3997 Views
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Article
Establishing high-accuracy biomarkers for colorectal cancer by comparing fecal microbiomes in patients with healthy families
Jian Yang, Dongfang Li, Zhenyu Yang, Wenkui Dai, Xin Feng, Yanhong Liu, Yiqi Jiang, Pingang Li, Yinhu Li, Bo Tang, Qian Zhou, Chuangzhao Qiu, Chao Zhang, Ximing Xu, Su Feng, Daxi Wang, Heping Wang, Wenjian Wang, Yuejie Zheng, Lin Zhang, Wenjie Wang, Ke Zhou, Shuaicheng Li & Peiwu Yu
Pages: 918-929
Published online: 23 Jan 2020
AbstractforEstablishing high-accuracy biomarkers for colorectal cancer by comparing fecal microbiomes in patients with healthy families | Full Text | References | PDF (1.8 MB) | EPUB | Supplemental
  • 4135 Views
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Article
Probiotics maintain the intestinal microbiome homeostasis of the sailors during a long sea voyage
Jiachao Zhang, Jinshan Zhao, Hao Jin, Ruirui Lv, Huiwen Shi, Guozhong De, Bo Yang, Zhihong Sun & Heping Zhang
Pages: 930-943
Published online: 20 Feb 2020
AbstractforProbiotics maintain the intestinal microbiome homeostasis of the sailors during a long sea voyage | Full Text | References | PDF (3 MB) | EPUB | Supplemental
  • 3715 Views
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Article
Dietary cellulose prevents gut inflammation by modulating lipid metabolism and gut microbiota
Yeji Kim, Sung Wook Hwang, Seungil Kim, Yong-Soo Lee, Tae-Young Kim, Su-Hyun Lee, Su Jung Kim, Hyun Ju Yoo, Eun Na Kim & Mi-Na Kweon
Pages: 944-961
Published online: 05 Mar 2020
AbstractforDietary cellulose prevents gut inflammation by modulating lipid metabolism and gut microbiota | Full Text | References | PDF (6.6 MB) | EPUB | Supplemental
  • 10221 Views
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Article
Distinct maternal microbiota clusters are associated with diet during pregnancy: impact on neonatal microbiota and infant growth during the first 18 months of life
Izaskun García-Mantrana, Marta Selma-Royo, Sonia González, Anna Parra-Llorca, Cecilia Martínez-Costa & María Carmen Collado
Pages: 962-978
Published online: 13 Mar 2020
AbstractforDistinct maternal microbiota clusters are associated with diet during pregnancy: impact on neonatal microbiota and infant growth during the first 18 months of life | Full Text | References | PDF (2.9 MB) | EPUB
  • 10833 Views
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Article
The microbiome modulating activity of bile acids
Yuan Tian, Wei Gui, Imhoi Koo, Philip B. Smith, Erik L. Allman, Robert G. Nichols, Bipin Rimal, Jingwei Cai, Qing Liu & Andrew D. Patterson
Pages: 979-996
Published online: 05 Mar 2020
AbstractforThe microbiome modulating activity of bile acids | Full Text | References | PDF (24.4 MB) | EPUB | Supplemental
  • 10028 Views
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Article
Lactobacillus reuteri maintains intestinal epithelial regeneration and repairs damaged intestinal mucosa
Haiqin Wu, Shuang Xie, Jinfeng Miao, Yuchen Li, Zhihua Wang, Minjuan Wang & Qinghua Yu
Pages: 997-1014
Published online: 05 Mar 2020
AbstractforLactobacillus reuteri maintains intestinal epithelial regeneration and repairs damaged intestinal mucosa | Full Text | References | PDF (6.4 MB) | EPUB | Supplemental
  • 9239 Views
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Article
Beneficial effects of LRP6-CRISPR on prevention of alcohol-related liver injury surpassed fecal microbiota transplant in a rat model
Linghua Yu, Linlin Wang, Huixing Yi & Xiaojun Wu
Pages: 1015-1029
Published online: 13 Mar 2020
AbstractforBeneficial effects of LRP6-CRISPR on prevention of alcohol-related liver injury surpassed fecal microbiota transplant in a rat model | Full Text | References | PDF (4 MB) | EPUB
  • 2426 Views
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Article
Specific gut microbiome signature predicts the early-stage lung cancer
Yajuan Zheng, Zhaoyuan Fang, Yun Xue, Jian Zhang, Junjie Zhu, Renyuan Gao, Shun Yao, Yi Ye, Shihui Wang, Changdong Lin, Shiyang Chen, Hsinyi Huang, Liang Hu, Ge-Ning Jiang, Huanlong Qin, Peng Zhang, Jianfeng Chen & Hongbin Ji
Pages: 1030-1042
Published online: 02 Apr 2020
AbstractforSpecific gut microbiome signature predicts the early-stage lung cancer | Full Text | References | PDF (3 MB) | EPUB | Supplemental
  • 10803 Views
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Article
Maternal sucralose intake alters gut microbiota of offspring and exacerbates hepatic steatosis in adulthood
Xin Dai, Zixuan Guo, Danfeng Chen, Lu Li, Xueli Song, Tianyu Liu, Ge Jin, Yun Li, Yi Liu, Aihemaiti Ajiguli, Cheng Yang, Bangmao Wang & Hailong Cao
Pages: 1043-1063
Published online: 31 Mar 2020
AbstractforMaternal sucralose intake alters gut microbiota of offspring and exacerbates hepatic steatosis in adulthood | Full Text | References | PDF (6.1 MB) | EPUB | Supplemental
  • 4762 Views
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Article
Addition of insoluble fiber to isolation media allows for increased metabolite diversity of lab-cultivable microbes derived from zebrafish gut samples
Alanna R. Condren, Maria S Costa, Natalia Rivera Sanchez, Sindhu Konkapaka, Kristin L Gallik, Ankur Saxena, Brian T Murphy & Laura M Sanchez
Pages: 1064-1076
Published online: 22 Mar 2020
AbstractforAddition of insoluble fiber to isolation media allows for increased metabolite diversity of lab-cultivable microbes derived from zebrafish gut samples | Full Text | References | PDF (2.5 MB) | EPUB | Supplemental
  • 1569 Views
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Article
Vancomycin prevents fermentable fiber-induced liver cancer in mice with dysbiotic gut microbiota
Vishal Singh, Beng San Yeoh, Ahmed A. Abokor, Rachel M. Golonka, Yuan Tian, Andrew D. Patterson, Bina Joe, Mathias Heikenwalder & Matam Vijay-Kumar
Pages: 1077-1091
Published online: 30 Mar 2020
AbstractforVancomycin prevents fermentable fiber-induced liver cancer in mice with dysbiotic gut microbiota | Full Text | References | PDF (4.2 MB) | EPUB
  • 4177 Views
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Addendum

Addendum
Oral antibiotic use and chronic disease: long-term health impact beyond antimicrobial resistance and Clostridioides difficile
Jessica Queen, Jiajia Zhang & Cynthia L Sears
Pages: 1092-1103
Published online: 09 Feb 2020
AbstractforOral antibiotic use and chronic disease: long-term health impact beyond antimicrobial resistance and Clostridioides difficile | Full Text | References | PDF (1.2 MB) | EPUB
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Addendum
Strain-level analysis of gut-resident pro-inflammatory viridans group Streptococci suppressed by long-term cotrimoxazole prophylaxis among HIV-positive children in Zimbabwe
Ethan K. Gough, Claire D. Bourke, Chipo Berejena, Annie Shonhai, Mutsa Bwakura-Dangarembizi, Andrew J. Prendergast & Amee R. Manges
Pages: 1104-1115
Published online: 05 Feb 2020
AbstractforStrain-level analysis of gut-resident pro-inflammatory viridans group Streptococci suppressed by long-term cotrimoxazole prophylaxis among HIV-positive children in Zimbabwe | Full Text | References | PDF (1.6 MB) | EPUB
  • 1437 Views
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Method

Following the community development of SIHUMIx – a new intestinal in vitro model for bioreactor use
Jannike Lea Krause, Stephanie Serena Schaepe, Katarina Fritz-Wallace, Beatrice Engelmann, Ulrike Rolle-Kampczyk, Sabine Kleinsteuber, Florian Schattenberg, Zishu Liu, Susann Mueller, Nico Jehmlich, Martin Von Bergen & Gunda Herberth
Pages: 1116-1129
Published online: 10 Jan 2020
AbstractforFollowing the community development of SIHUMIx – a new intestinal in vitro model for bioreactor use | Full Text | References | PDF (3 MB) | EPUB | Supplemental
  • 4301 Views
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Correction

Correction
Correction
Page: 1130
Published online: 29 Jan 2020
CitationforCorrection | Full Text | PDF (88.1 KB) | EPUB
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Correction
Correction
Pages: 1131-1133
Published online: 27 Feb 2020
First Page PreviewforCorrection | Full Text | PDF (2.6 MB) | EPUB
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