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Molecular and Cellular Biology Volume 33, 2013 - Issue 3
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Article

Link of NTR-Mediated Spliceosome Disassembly with DEAH-Box ATPases Prp2, Prp16, and Prp22

Hsin-Chou Chena Institute of Microbiology and Immunology, National Yang-Ming University, Taipei, Taiwan;b Institute of Molecular Biology, Academia Sinica, Taipei, Taiwan
,
Chi-Kang Tsengb Institute of Molecular Biology, Academia Sinica, Taipei, Taiwan
,
Rong-Tzong Tsaib Institute of Molecular Biology, Academia Sinica, Taipei, Taiwan
,
Che-Sheng Chungb Institute of Molecular Biology, Academia Sinica, Taipei, Taiwan
&
Soo-Chen Chenga Institute of Microbiology and Immunology, National Yang-Ming University, Taipei, Taiwan;b Institute of Molecular Biology, Academia Sinica, Taipei, TaiwanCorrespondence[email protected]
Pages 514-525 | Received 08 Aug 2012, Accepted 08 Nov 2012, Published online: 20 Mar 2023

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Gonzalo I. Mendoza-Ochoa, J. David Barrass, Isabella E. Maudlin & Jean D. Beggs. (2019) Blocking late stages of splicing quickly limits pre-spliceosome assembly in vivo. RNA Biology 16:12, pages 1775-1784.
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Eva Absmeier, Karine F. Santos & Markus C. Wahl. (2016) Functions and regulation of the Brr2 RNA helicase during splicing. Cell Cycle 15:24, pages 3362-3377.
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Rogerio Alves de Almeida & Raymond T O’Keefe. (2015) The NineTeen Complex (NTC) and NTC-associated proteins as targets for spliceosomal ATPase action during pre-mRNA splicing . RNA Biology 12:2, pages 109-114.
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Prakash Koodathingal & Jonathan P. Staley. (2013) Splicing fidelity. RNA Biology 10:7, pages 1073-1079.
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Ting-Wei Chiang & Soo-Chen Cheng. (2013) A Weak Spliceosome-Binding Domain of Yju2 Functions in the First Step and Bypasses Prp16 in the Second Step of Splicing. Molecular and Cellular Biology 33:9, pages 1746-1755.
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Articles from other publishers (27)

Corbin S. Black, Thomas A. Whelan, Erin L. Garside, Andrew M. MacMillan, Naomi M. Fast & Stephen D. Rader. (2023) Spliceosome assembly and regulation: insights from analysis of highly reduced spliceosomes. RNA 29:5, pages 531-550.
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Chi-Kang Tseng & Soo-Chen Cheng. 2023. RNA-Protein Complexes and Interactions. RNA-Protein Complexes and Interactions 193 211 .
Eva Absmeier, Karen Vester, Tahereh Ghane, Dmitry Burakovskiy, Pohl Milon, Petra Imhof, Marina V. Rodnina, Karine F. Santos & Markus C. Wahl. (2021) Long-range allostery mediates cooperative adenine nucleotide binding by the Ski2-like RNA helicase Brr2. Journal of Biological Chemistry 297:1, pages 100829.
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Nicholas A. Larsen. 2021. Macromolecular Protein Complexes III: Structure and Function. Macromolecular Protein Complexes III: Structure and Function 409 432 .
Eva Absmeier & Markus C. Wahl. 2021. RNA Remodeling Proteins. RNA Remodeling Proteins 193 215 .
Max E. WilkinsonClément CharentonKiyoshi Nagai. (2020) RNA Splicing by the Spliceosome. Annual Review of Biochemistry 89:1, pages 359-388.
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Nan-Ying Wu & Soo-Chen Cheng. (2019) Functional analysis of Cwc24 ZF-domain in 5′ splice site selection. Nucleic Acids Research 47:19, pages 10327-10339.
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Rebecca Toroney, Klaus H. Nielsen & Jonathan P. Staley. (2019) Termination of pre-mRNA splicing requires that the ATPase and RNA unwindase Prp43p acts on the catalytic snRNA U6. Genes & Development 33:21-22, pages 1555-1574.
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Che-Sheng Chung, Chi-Kang Tseng, Yung-Hua Lai, Hui-Fang Wang, Andrew J Newman & Soo-Chen Cheng. (2019) Dynamic protein–RNA interactions in mediating splicing catalysis. Nucleic Acids Research 47:2, pages 899-910.
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Yu-Lun Su, Hsin-Chou Chen, Rong-Tzong Tsai, Pei-Chun Lin & Soo-Chen Cheng. (2018) Cwc23 is a component of the NTR complex and functions to stabilize Ntr1 and facilitate disassembly of spliceosome intermediates. Nucleic Acids Research 46:7, pages 3764-3773.
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Jan Wollenhaupt, Lisa M. Henning, Jana Sticht, Christian Becke, Christian Freund, Karine F. Santos & Markus C. Wahl. (2018) Intrinsically Disordered Protein Ntr2 Modulates the Spliceosomal RNA Helicase Brr2. Biophysical Journal 114:4, pages 788-799.
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Kentaro Nakaminami & Motoaki Seki. 2018. Survival Strategies in Extreme Cold and Desiccation. Survival Strategies in Extreme Cold and Desiccation 23 44 .
Ruixue Wan, Chuangye Yan, Rui Bai, Jianlin Lei & Yigong Shi. (2017) Structure of an Intron Lariat Spliceosome from Saccharomyces cerevisiae. Cell 171:1, pages 120-132.e12.
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Lisa M. Henning, Karine F. Santos, Jana Sticht, Stefanie Jehle, Chung-Tien Lee, Malte Wittwer, Henning Urlaub, Ulrich Stelzl, Markus C. Wahl & Christian Freund. (2017) A new role for FBP21 as regulator of Brr2 helicase activity. Nucleic Acids Research 45:13, pages 7922-7937.
Crossref
Jean-Baptiste Fourmann, Marcel J. Tauchert, Ralf Ficner, Patrizia Fabrizio & Reinhard Lührmann. (2017) Regulation of Prp43-mediated disassembly of spliceosomes by its cofactors Ntr1 and Ntr2. Nucleic Acids Research 45:7, pages 4068-4080.
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Chi-Kang Tseng, Che-Sheng Chung, Hsin-Chou Chen & Soo-Chen Cheng. (2017) A central role of Cwc25 in spliceosome dynamics during the catalytic phase of pre-mRNA splicing. RNA 23:4, pages 546-556.
Crossref
Lauren T. Neves, Stephen Douglass, Roberto Spreafico, Srivats Venkataramanan, Tracy L. Kress & Tracy L. Johnson. (2017) The histone variant H2A.Z promotes efficient cotranscriptional splicing in S. cerevisiae . Genes & Development 31:7, pages 702-717.
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Wojciech P. Galej, Max E. Wilkinson, Sebastian M. Fica, Chris Oubridge, Andrew J. Newman & Kiyoshi Nagai. (2016) Cryo-EM structure of the spliceosome immediately after branching. Nature 537:7619, pages 197-201.
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Jean-Baptiste Fourmann, Olexandr Dybkov, Dmitry E Agafonov, Marcel J Tauchert, Henning Urlaub, Ralf Ficner, Patrizia Fabrizio & Reinhard Lührmann. (2016) The target of the DEAH-box NTP triphosphatase Prp43 in Saccharomyces cerevisiae spliceosomes is the U2 snRNP-intron interaction. eLife 5.
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Yen-Chi Liu & Soo-Chen Cheng. (2015) Functional roles of DExD/H-box RNA helicases in Pre-mRNA splicing. Journal of Biomedical Science 22:1.
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Cornelius Schneider, Dmitry E. Agafonov, Jana Schmitzová, Klaus Hartmuth, Patrizia Fabrizio & Reinhard Lührmann. (2015) Dynamic Contacts of U2, RES, Cwc25, Prp8 and Prp45 Proteins with the Pre-mRNA Branch-Site and 3' Splice Site during Catalytic Activation and Step 1 Catalysis in Yeast Spliceosomes. PLOS Genetics 11:9, pages e1005539.
Crossref
Daipayan Banerjee, Peter M McDaniel & Brian C Rymond. (2015) Limited Portability of G-Patch Domains in Regulators of the Prp43 RNA Helicase Required for Pre-mRNA Splicing and Ribosomal RNA Maturation in Saccharomyces cerevisiae . Genetics 200:1, pages 135-147.
Crossref
Olivier Cordin, Daniela Hahn, Ross Alexander, Amit Gautam, Cosmin Saveanu, J. David Barrass & Jean D. Beggs. (2014) Brr2p carboxy-terminal Sec63 domain modulates Prp16 splicing RNA helicase. Nucleic Acids Research 42:22, pages 13897-13910.
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Weijun Chen, Hennady P. Shulha, Ami Ashar-Patel, Jing Yan, Karin M. Green, Charles C. Query, Nick Rhind, Zhiping Weng & Melissa J. Moore. (2014) Endogenous U2·U5·U6 snRNA complexes in S. pombe are intron lariat spliceosomes . RNA 20:3, pages 308-320.
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Elizabeth A. Dunn & Stephen D. Rader. 2014. Fungal RNA Biology. Fungal RNA Biology 27 57 .
Ramya Krishnan, Mario R Blanco, Matthew L Kahlscheuer, John Abelson, Christine Guthrie & Nils G Walter. (2013) Biased Brownian ratcheting leads to pre-mRNA remodeling and capture prior to first-step splicing. Nature Structural & Molecular Biology 20:12, pages 1450-1457.
Crossref
Chi-Kang Tseng & Soo-Chen Cheng. (2013) The spliceosome catalyzes debranching in competition with reverse of the first chemical reaction. RNA 19:7, pages 971-981.
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