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Gene Expression

Combined Global Localization Analysis and Transcriptome Data Identify Genes That Are Directly Coregulated by Adr1 and Cat8

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Pages 2138-2146 | Received 26 Aug 2004, Accepted 20 Dec 2004, Published online: 27 Mar 2023

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Emanuel Gonçalves, Zrinka Raguz Nakic, Mattia Zampieri, Omar Wagih, David Ochoa, Uwe Sauer, Pedro Beltrao & Julio Saez-Rodriguez. (2017) Systematic Analysis of Transcriptional and Post-transcriptional Regulation of Metabolism in Yeast. PLOS Computational Biology 13:1, pages e1005297.
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Zhaoyue Wang, Xuejing Bai, Xuena Guo & Xiuping He. (2017) Regulation of crucial enzymes and transcription factors on 2-phenylethanol biosynthesis via Ehrlich pathway in Saccharomyces cerevisiae . Journal of Industrial Microbiology and Biotechnology 44:1, pages 129-139.
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Kostyantyn Dmytruk, Olena Kurylenko, Justyna Ruchala, Olena Ishchuk & Andriy Sibirny. 2017. Yeast Diversity in Human Welfare. Yeast Diversity in Human Welfare 257 282 .
Silvia Cardarelli, Sirio D'Amici, Paola Tassone, Angela Tramonti, Daniela Uccelletti, Patrizia Mancini & Michele Saliola. (2016) Characterization of the transcription factor encoding gene, KlADR1: metabolic role in Kluyveromyces lactis and expression in Saccharomyces cerevisiae. Microbiology 162:11, pages 1933-1944.
Crossref
Drew G. MichaelEzekiel J. MaierHolly BrownStacey R. GishChristopher FioreRandall H. BrownMichael R. Brent. (2016) Model-based transcriptome engineering promotes a fermentative transcriptional state in yeast. Proceedings of the National Academy of Sciences 113:47.
Crossref
Sofie Deroover, Ruben Ghillebert, Tom Broeckx, Joris Winderickx & Filip Rolland. (2016) Trehalose-6-phosphate synthesis controls yeast gluconeogenesis downstream and independent of SNF1. FEMS Yeast Research 16:4, pages fow036.
Crossref
Aaron T Spivak & Gary D Stormo. (2016) Combinatorial Cis -regulation in Saccharomyces Species . G3 Genes|Genomes|Genetics 6:3, pages 653-667.
Crossref
Zvi Tamari & Naama Barkai. (2016) Natural Diversity in Pentose Fermentation Is Explained by Variations in Histone Deacetylases. Cell Reports 14:3, pages 458-463.
Crossref
Pascual Sanz, Rosa Viana & Maria Adelaida Garcia-Gimeno. 2016. AMP-activated Protein Kinase. AMP-activated Protein Kinase 353 374 .
Margarida Casal, Odília Queirós, Gabriel Talaia, David Ribas & Sandra Paiva. 2016. Yeast Membrane Transport. Yeast Membrane Transport 229 251 .
Roland Prielhofer, Stephanie P Cartwright, Alexandra B Graf, Minoska Valli, Roslyn M Bill, Diethard Mattanovich & Brigitte Gasser. (2015) Pichia pastoris regulates its gene-specific response to different carbon sources at the transcriptional, rather than the translational, level. BMC Genomics 16:1.
Crossref
Constance Mehlgarten, Jorrit-Jan Krijger, Ioana Lemnian, André Gohr, Lydia Kasper, Anne-Kathrin Diesing, Ivo Grosse & Karin D. Breunig. (2015) Divergent Evolution of the Transcriptional Network Controlled by Snf1-Interacting Protein Sip4 in Budding Yeasts. PLOS ONE 10:10, pages e0139464.
Crossref
Ömur Kayikci & Jens Nielsen. (2015) Glucose repression in Saccharomyces cerevisiae . FEMS Yeast Research 15:6, pages fov068.
Crossref
Kobi J. Simpson-Lavy, Alex Bronstein, Martin Kupiec & Mark Johnston. (2015) Cross-Talk between Carbon Metabolism and the DNA Damage Response in S. cerevisiae. Cell Reports 12:11, pages 1865-1875.
Crossref
Bernhard Schaefke, Tzi-Yuan Wang, Chuen-Yi Wang & Wen-Hsiung Li. (2015) Gains and Losses of Transcription Factor Binding Sites in Saccharomyces cerevisiae and Saccharomyces paradoxus . Genome Biology and Evolution 7:8, pages 2245-2257.
Crossref
Rita Gemayel, Sreenivas Chavali, Ksenia Pougach, Matthieu Legendre, Bo Zhu, Steven Boeynaems, Elisa van der Zande, Kris Gevaert, Frederic Rousseau, Joost Schymkowitz, M. Madan Babu & Kevin J. Verstrepen. (2015) Variable Glutamine-Rich Repeats Modulate Transcription Factor Activity. Molecular Cell 59:4, pages 615-627.
Crossref
Fred D Mast, Richard A Rachubinski & John D Aitchison. (2015) Signaling dynamics and peroxisomes. Current Opinion in Cell Biology 35, pages 131-136.
Crossref
Katty V. Y. Goossens, Francesco S. Ielasi, Intawat Nookaew, Ingeborg Stals, Livan Alonso-Sarduy, Luk Daenen, Sebastiaan E. Van Mulders, Catherine Stassen, Rudy G. E. van Eijsden, Verena Siewers, Freddy R. Delvaux, Sandor Kasas, Jens Nielsen, Bart Devreese & Ronnie G. Willaert. (2015) Molecular Mechanism of Flocculation Self-Recognition in Yeast and Its Role in Mating and Survival. mBio 6:2.
Crossref
Rebecca C. Deed, Nathan K. Deed & Richard C. Gardner. (2015) Transcriptional response of Saccharomyces cerevisiae to low temperature during wine fermentation. Antonie van Leeuwenhoek 107:4, pages 1029-1048.
Crossref
Pitchya Tangsombatvichit, Marta V. Semkiv, Andriy A. Sibirny, Laran T. Jensen, Khanok Ratanakhanokchai & Nitnipa Soontorngun. (2015) Zinc cluster protein Znf1, a novel transcription factor of non-fermentative metabolism in Saccharomyces cerevisiae. FEMS Yeast Research 15:2.
Crossref
Katrin Weinhandl, Margit Winkler, Anton Glieder & Andrea Camattari. (2014) Carbon source dependent promoters in yeasts. Microbial Cell Factories 13:1.
Crossref
Luciano Galdieri, Tiantian Zhang, Daniella Rogerson, Rron Lleshi & Ales Vancura. (2014) Protein Acetylation and Acetyl Coenzyme A Metabolism in Budding Yeast. Eukaryotic Cell 13:12, pages 1472-1483.
Crossref
Pabitra K. Parua, Kenneth M. Dombek & Elton T. Young. (2014) Yeast 14-3-3 Protein Functions as a Comodulator of Transcription by Inhibiting Coactivator Functions. Journal of Biological Chemistry 289:51, pages 35542-35560.
Crossref
Arnob Dutta, Madelaine Gogol, Jeong-Hoon Kim, Michaela Smolle, Swaminathan Venkatesh, Joshua Gilmore, Laurence Florens, Michael P. Washburn & Jerry L. Workman. (2014) Swi/Snf dynamics on stress-responsive genes is governed by competitive bromodomain interactions. Genes & Development 28:20, pages 2314-2330.
Crossref
Najla Gasmi, Pierre-Etienne Jacques, Natalia Klimova, Xiao Guo, Alessandra Ricciardi, François Robert & Bernard Turcotte. (2014) The Switch from Fermentation to Respiration in Saccharomyces cerevisiae Is Regulated by the Ert1 Transcriptional Activator/Repressor . Genetics 198:2, pages 547-560.
Crossref
Piyasuda Thepnok, Khanok Ratanakhanokchai & Nitnipa Soontorngun. (2014) The novel zinc cluster regulator Tog1 plays important roles in oleate utilization and oxidative stress response in Saccharomyces cerevisiae. Biochemical and Biophysical Research Communications 450:4, pages 1276-1282.
Crossref
Katherine A. BraunStefania VagaKenneth M. DombekFang FangSalvator PalmisanoRuedi AebersoldElton T. Young. (2014) Phosphoproteomic analysis identifies proteins involved in transcription-coupled mRNA decay as targets of Snf1 signaling. Science Signaling 7:333.
Crossref
Kai Qi, Jian-Jiang Zhong & Xiao-Xia Xia. (2014) Triggering Respirofermentative Metabolism in the Crabtree-Negative Yeast Pichia guilliermondii by Disrupting the CAT8 Gene . Applied and Environmental Microbiology 80:13, pages 3879-3887.
Crossref
Adrien Zimmer, Cécile Durand, Nicolás Loira, Pascal Durrens, David James Sherman & Philippe Marullo. (2014) QTL Dissection of Lag Phase in Wine Fermentation Reveals a New Translocation Responsible for Saccharomyces cerevisiae Adaptation to Sulfite. PLoS ONE 9:1, pages e86298.
Crossref
Pabitra K. Parua & Elton T. Young. (2014) Binding and Transcriptional Regulation by 14-3-3 (Bmh) Proteins Requires Residues Outside of the Canonical Motif. Eukaryotic Cell 13:1, pages 21-30.
Crossref
John Seip, Raymond Jackson, Hongxian He, Quinn Zhu & Seung-Pyo Hong. (2013) Snf1 Is a Regulator of Lipid Accumulation in Yarrowia lipolytica. Applied and Environmental Microbiology 79:23, pages 7360-7370.
Crossref
Kobi J. Simpson-Lavy & Mark Johnston. (2013) SUMOylation regulates the SNF1 protein kinase. Proceedings of the National Academy of Sciences 110:43, pages 17432-17437.
Crossref
Bong-Kwan Han & Scott D. Emr. (2013) The Phosphatidylinositol 3,5-Bisphosphate (PI(3,5)P2)-dependent Tup1 Conversion (PIPTC) Regulates Metabolic Reprogramming from Glycolysis to Gluconeogenesis. Journal of Biological Chemistry 288:28, pages 20633-20645.
Crossref
Thomas Vogl & Anton Glieder. (2013) Regulation of Pichia pastoris promoters and its consequences for protein production. New Biotechnology 30:4, pages 385-404.
Crossref
Leeat Keren, Ora Zackay, Maya Lotan‐Pompan, Uri Barenholz, Erez Dekel, Vered Sasson, Guy Aidelberg, Anat Bren, Danny Zeevi, Adina Weinberger, Uri Alon, Ron Milo & Eran Segal. (2013) Promoters maintain their relative activity levels under different growth conditions. Molecular Systems Biology 9:1.
Crossref
James R Broach. (2012) Nutritional Control of Growth and Development in Yeast. Genetics 192:1, pages 73-105.
Crossref
Elton T. Young, Chao Zhang, Kevan M. Shokat, Pabitra K. Parua & Katherine A. Braun. (2012) The AMP-activated Protein Kinase Snf1 Regulates Transcription Factor Binding, RNA Polymerase II Activity, and mRNA Stability of Glucose-repressed Genes in Saccharomyces cerevisiae. Journal of Biological Chemistry 287:34, pages 29021-29034.
Crossref
Nitnipa Soontorngun, Sirilak Baramee, Chalinee Tangsombatvichit, Piyasuda Thepnok, Supapon Cheevadhanarak, François Robert & Bernard Turcotte. (2012) Genome-wide location analysis reveals an important overlap between the targets of the yeast transcriptional regulators Rds2 and Adr1. Biochemical and Biophysical Research Communications 423:4, pages 632-637.
Crossref
Yumi Suzuki, Sandra L. Murray, Koon Ho Wong, Meryl A. Davis & Michael J. Hynes. (2012) Reprogramming of carbon metabolism by the transcriptional activators AcuK and AcuM in Aspergillus nidulans. Molecular Microbiology 84:5, pages 942-964.
Crossref
Claudio De Virgilio. (2012) The essence of yeast quiescence. FEMS Microbiology Reviews 36:2, pages 306-339.
Crossref
Lilia Alberghina, Gabriella Mavelli, Guido Drovandi, Pasquale Palumbo, Stefania Pessina, Farida Tripodi, Paola Coccetti & Marco Vanoni. (2012) Cell growth and cell cycle in Saccharomyces cerevisiae: Basic regulatory design and protein–protein interaction network. Biotechnology Advances 30:1, pages 52-72.
Crossref
Daniela Livas, Marinka JH Almering, Jean-Marc Daran, Jack T Pronk & Juana M Gancedo. (2011) Transcriptional responses to glucose in Saccharomyces cerevisiae strains lacking a functional protein kinase A. BMC Genomics 12:1.
Crossref
Laura Carreto, Maria F Eiriz, Inês Domingues, Dorit Schuller, Gabriela R Moura & Manuel AS Santos. (2011) Expression variability of co-regulated genes differentiates Saccharomyces cerevisiae strains. BMC Genomics 12:1.
Crossref
Steven Hahn & Elton T Young. (2011) Transcriptional Regulation in Saccharomyces cerevisiae : Transcription Factor Regulation and Function, Mechanisms of Initiation, and Roles of Activators and Coactivators . Genetics 189:3, pages 705-736.
Crossref
Elizabeth M. Humston, Kenneth M. Dombek, Benjamin P. Tu, Elton T. Young & Robert E. Synovec. (2011) Toward a global analysis of metabolites in regulatory mutants of yeast. Analytical and Bioanalytical Chemistry 401:8, pages 2387-2402.
Crossref
Kentaro Ohkuni & Katsumi Kitagawa. (2011) Endogenous Transcription at the Centromere Facilitates Centromere Activity in Budding Yeast. Current Biology 21:20, pages 1695-1703.
Crossref
Michael J. Hynes, Sandra L. Murray, Alex Andrianopoulos & Meryl A. Davis. (2011) Role of Carnitine Acetyltransferases in Acetyl Coenzyme A Metabolism in Aspergillus nidulans. Eukaryotic Cell 10:4, pages 547-555.
Crossref
Juan J. Infante, G. Lynn Law, I-Ting Wang, Hsin-Wen Ella Chang & Elton T. Young. (2011) Activator-independent transcription of Snf1-dependent genes in mutants lacking histone tails. Molecular Microbiology 80:2, pages 407-422.
Crossref
Andreas M. Raab, Verena Hlavacek, Natalia Bolotina & Christine Lang. (2011) Shifting the Fermentative/Oxidative Balance in Saccharomyces cerevisiae by Transcriptional Deregulation of Snf1 via Overexpression of the Upstream Activating Kinase Sak1p . Applied and Environmental Microbiology 77:6, pages 1981-1989.
Crossref
Wei Zhang, Edward G. Dudley & Joseph T. Wade. 2011. Genomics of Foodborne Bacterial Pathogens. Genomics of Foodborne Bacterial Pathogens 311 341 .
Tim van Zutphen, Richard JS Baerends, Kim A Susanna, Anne de Jong, Oscar P Kuipers, Marten Veenhuis & Ida J van der Klei. (2010) Adaptation of Hansenula polymorpha to methanol: a transcriptome analysis. BMC Genomics 11:1.
Crossref
Luciano GaldieriSwati MehrotraSean YuAles Vancura. (2010) Transcriptional Regulation in Yeast during Diauxic Shift and Stationary Phase. OMICS: A Journal of Integrative Biology 14:6, pages 629-638.
Crossref
Maria José Rodriguez-Colman, Gemma Reverter-Branchat, M. Alba Sorolla, Jordi Tamarit, Joaquim Ros & Elisa Cabiscol. (2010) The Forkhead Transcription Factor Hcm1 Promotes Mitochondrial Biogenesis and Stress Resistance in Yeast. Journal of Biological Chemistry 285:47, pages 37092-37101.
Crossref
Jüri Reimand, Juan M. Vaquerizas, Annabel E. Todd, Jaak Vilo & Nicholas M. Luscombe. (2010) Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets. Nucleic Acids Research 38:14, pages 4768-4777.
Crossref
Jie Zhang, Lisbeth Olsson & Jens Nielsen. (2010) The β-subunits of the Snf1 kinase in Saccharomyces cerevisiae, Gal83 and Sip2, but not Sip1, are redundant in glucose derepression and regulation of sterol biosynthesis. Molecular Microbiology 77:2, pages 371-383.
Crossref
Stefano Busti, Paola Coccetti, Lilia Alberghina & Marco Vanoni. (2010) Glucose Signaling-Mediated Coordination of Cell Growth and Cell Cycle in Saccharomyces Cerevisiae. Sensors 10:6, pages 6195-6240.
Crossref
Sooraj Ratnakumar & Elton T. Young. (2010) Snf1 Dependence of Peroxisomal Gene Expression Is Mediated by Adr1. Journal of Biological Chemistry 285:14, pages 10703-10714.
Crossref
Michael J. Hynes. 2010. Cellular and Molecular Biology of Filamentous Fungi. Cellular and Molecular Biology of Filamentous Fungi 312 324 .
Bernard Turcotte, Xiao Bei Liang, François Robert & Nitnipa Soontorngun. (2010) Transcriptional regulation of nonfermentable carbon utilization in budding yeast. FEMS Yeast Research 10:1, pages 2-13.
Crossref
Viktor M. Boer, Christopher A. Crutchfield, Patrick H. Bradley, David Botstein & Joshua D. Rabinowitz. (2010) Growth-limiting Intracellular Metabolites in Yeast Growing under Diverse Nutrient Limitations. Molecular Biology of the Cell 21:1, pages 198-211.
Crossref
Bing-Zhi Li, Jing-Sheng Cheng, Bin Qiao & Ying-Jin Yuan. (2009) Genome-wide transcriptional analysis of Saccharomyces cerevisiae during industrial bioethanol fermentation. Journal of Industrial Microbiology & Biotechnology 37:1, pages 43-55.
Crossref
Melissa A. Ramírez & Michael C. Lorenz. (2009) The Transcription Factor Homolog CTF1 Regulates β-Oxidation in Candida albicans . Eukaryotic Cell 8:10, pages 1604-1614.
Crossref
Elton T. Young, Kuangyu Yen, Kenneth M. Dombek, G. Lynn Law, Ella Chang & Erin Arms. (2009) Snf1-independent, glucose-resistant transcription of Adr1-dependent genes in a mediator mutant of Saccharomyces cerevisiae . Molecular Microbiology 74:2, pages 364-383.
Crossref
Karl A. Zawadzki, Alexandre V. Morozov & James R. Broach. (2009) Chromatin-dependent Transcription Factor Accessibility Rather than Nucleosome Remodeling Predominates during Global Transcriptional Restructuring in Saccharomyces cerevisiae . Molecular Biology of the Cell 20:15, pages 3503-3513.
Crossref
Xin Chenglin Li, John C. Schimenti & Bik K. Tye. (2009) Aneuploidy and Improved Growth Are Coincident but Not Causal in a Yeast Cancer Model. PLoS Biology 7:7, pages e1000161.
Crossref
Patrick H. Bradley, Matthew J. Brauer, Joshua D. Rabinowitz & Olga G. Troyanskaya. (2009) Coordinated Concentration Changes of Transcripts and Metabolites in Saccharomyces cerevisiae. PLoS Computational Biology 5:1, pages e1000270.
Crossref
David R. Lorenz, Charles R. Cantor & James J. Collins. (2009) A network biology approach to aging in yeast. Proceedings of the National Academy of Sciences 106:4, pages 1145-1150.
Crossref
Shadia Zaman, Soyeon I Lippman, Lisa Schneper, Noam Slonim & James R Broach. (2009) Glucose regulates transcription in yeast through a network of signaling pathways. Molecular Systems Biology 5:1.
Crossref
Nicklas Bonander, Cecilia Ferndahl, Petter Mostad, Martin DB Wilks, Celia Chang, Louise Showe, Lena Gustafsson, Christer Larsson & Roslyn M Bill. (2008) Transcriptome analysis of a respiratory Saccharomyces cerevisiae strain suggests the expression of its phenotype is glucose insensitive and predominantly controlled by Hap4, Cat8 and Mig1. BMC Genomics 9:1.
Crossref
Shadia ZamanSoyeon Im LippmanXin ZhaoJames R. Broach. (2008) How Saccharomyces Responds to Nutrients . Annual Review of Genetics 42:1, pages 27-81.
Crossref
Margarida Casal, Sandra Paiva, Odília Queirós & Isabel Soares-Silva. (2008) Transport of carboxylic acids in yeasts. FEMS Microbiology Reviews 32:6, pages 974-994.
Crossref
Olga de Smidt, James C. du Preez & Jacobus Albertyn. (2008) The alcohol dehydrogenases of Saccharomyces cerevisiae : a comprehensive review . FEMS Yeast Research 8:7, pages 967-978.
Crossref
Rhiannon K. Biddick, G. Lynn Law, Kevin Khaw Beng Chin & Elton T. Young. (2008) The Transcriptional Coactivators SAGA, SWI/SNF, and Mediator Make Distinct Contributions to Activation of Glucose-repressed Genes. Journal of Biological Chemistry 283:48, pages 33101-33109.
Crossref
Joanna Trzcinska-Danielewicz, Takao Ishikawa, Arkadiusz Miciałkiewicz & Jan Fronk. (2008) Yeast transcription factor Oaf1 forms homodimer and induces some oleate-responsive genes in absence of Pip2. Biochemical and Biophysical Research Communications 374:4, pages 763-766.
Crossref
Nataly Kacherovsky, Christine Tachibana, Emily Amos, David Fox & Elton T. Young. (2008) Promoter Binding by the Adr1 Transcriptional Activator May Be Regulated by Phosphorylation in the DNA-Binding Region. PLoS ONE 3:9, pages e3213.
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Chris Hlynialuk, Ryan Schierholtz, Amanda Vernooy & George van der Merwe. (2008) Nsf1/Ypl230w participates in transcriptional activation during non-fermentative growth and in response to salt stress in Saccharomyces cerevisiae. Microbiology 154:8, pages 2482-2491.
Crossref
Y.-W. Chang, F.-G. Robert Liu, N. Yu, H.-M. Sung, P. Yang, D. Wang, C.-J. Huang, M.-C. Shih & W.-H. Li. (2008) Roles of cis- and trans-Changes in the Regulatory Evolution of Genes in the Gluconeogenic Pathway in Yeast. Molecular Biology and Evolution 25:9, pages 1863-1875.
Crossref
Igor V. Karpichev, Jorge M. Durand-Heredia, Yi Luo & Gillian M. Small. (2008) Binding Characteristics and Regulatory Mechanisms of the Transcription Factors Controlling Oleate-responsive Genes in Saccharomyces cerevisiae. Journal of Biological Chemistry 283:16, pages 10264-10275.
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Yongchao Zhao, Wei Shao, Huajiang Wei, Jiying Qiao, Ying Lu, Yimin Sun, Keith Mitchelson, Jing Cheng & Yuxiang Zhou. (2008) Development of a Novel Oligonucleotide Array-Based Transcription Factor Assay Platform for Genome-Wide Active Transcription Factor Profiling in Saccharomyces cerevisiae . Journal of Proteome Research 7:3, pages 1315-1325.
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Oscar Maestre, Teresa García-Martínez, Rafael A. Peinado & Juan C. Mauricio. (2008) Effects of ADH2 Overexpression in Saccharomyces bayanus during Alcoholic Fermentation . Applied and Environmental Microbiology 74:3, pages 702-707.
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Rhiannon K. Biddick, G. Lynn Law & Elton T. Young. (2008) Adr1 and Cat8 Mediate Coactivator Recruitment and Chromatin Remodeling at Glucose-Regulated Genes. PLoS ONE 3:1, pages e1436.
Crossref
Henning Redestig, Daniel Weicht, Joachim Selbig & Matthew A Hannah. (2007) Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana. BMC Bioinformatics 8:1.
Crossref
Christine Tachibana, Rhiannon Biddick, G. Lynn Law & Elton T. Young. (2007) A Poised Initiation Complex Is Activated by SNF1. Journal of Biological Chemistry 282:52, pages 37308-37315.
Crossref
A. DeveauB. PalinC. DelaruelleM. PeterA. KohlerJ. C. PierratA. Sarniguet, J. GarbayeF. MartinP. Frey‐Klett. (2007) The mycorrhiza helper Pseudomonas fluorescens BBc6R8 has a specific priming effect on the growth, morphology and gene expression of the ectomycorrhizal fungus Laccaria bicolor S238N . New Phytologist 175:4, pages 743-755.
Crossref
Taewoo Ryu, Younghoon Kim, Dae-Won Kim & Doheon Lee. (2007) Computational identification of combinatorial regulation and transcription factor binding sites. Biotechnology and Bioengineering 97:6, pages 1594-1602.
Crossref
Marcus Gentsch, Margret Kuschel, Susan Schlegel & Gerold Barth. (2007) Mutations at different sites in members of the Gpr1/Fun34/YaaH protein family cause hypersensitivity to acetic acid in Saccharomyces cerevisiae as well as in Yarrowia lipolytica . FEMS Yeast Research 7:3, pages 380-390.
Crossref
Jennifer J Smith, Stephen A Ramsey, Marcello Marelli, Bruz Marzolf, Daehee Hwang, Ramsey A Saleem, Richard A Rachubinski & John D Aitchison. (2007) Transcriptional responses to fatty acid are coordinated by combinatorial control. Molecular Systems Biology 3:1.
Crossref
Lin Tang, Xiao Liu & Neil D Clarke. (2006) Inferring direct regulatory targets from expression and genome location analyses: a comparison of transcription factor deletion and overexpression. BMC Genomics 7:1.
Crossref
Aner Gurvitz & Hanspeter Rottensteiner. (2006) The biochemistry of oleate induction: Transcriptional upregulation and peroxisome proliferation. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research 1763:12, pages 1392-1402.
Crossref
Andreas Beyer, Christopher Workman, Jens Hollunder, Dörte Radke, Ulrich Möller, Thomas Wilhelm & Trey Ideker. (2006) Integrated Assessment and Prediction of Transcription Factor Binding. PLoS Computational Biology 2:6, pages e70.
Crossref
Valentina Voronkova, Nataly Kacherovsky, Christine Tachibana, Diana Yu & Elton T Young. (2006) Snf1-Dependent and Snf1-Independent Pathways of Constitutive ADH2 Expression in Saccharomyces cerevisiae . Genetics 172:4, pages 2123-2138.
Crossref
George M. Santangelo. (2006) Glucose Signaling in Saccharomyces cerevisiae . Microbiology and Molecular Biology Reviews 70:1, pages 253-282.
Crossref
Rachel Taylor, Bessie Wanja Kebaara, Tara Nazarenus, Ashley Jones, Rena Yamanaka, Rachel Uhrenholdt, Jason P. Wendler & Audrey L. Atkin. (2005) Gene Set Coregulated by the Saccharomyces cerevisiae Nonsense-Mediated mRNA Decay Pathway . Eukaryotic Cell 4:12, pages 2066-2077.
Crossref
. (2005) Current Awareness on Comparative and Functional Genomics. Comparative and Functional Genomics 6:7-8, pages 412-430.
Crossref

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