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Epigenetics Volume 6, 2011 - Issue 11
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Research Paper

Adaptation of the CHARM DNA methylation platform for the rat genome reveals novel brain region-specific differences

Richard S. Lee Department of Psychiatry and Behavioral Sciences; Johns Hopkins University, Baltimore, MD USA
,
Kellie L.K. Tamashiro Department of Psychiatry and Behavioral Sciences; Johns Hopkins University, Baltimore, MD USA
,
Martin J. Aryee Department of Oncology; Epigenetics Center; Department of Biostatistics of the Bloomberg School of Public Health; Johns Hopkins University; Baltimore, MD USA
,
Peter Murakami Epigenetics Center; Department of Biostatistics of the Bloomberg School of Public Health; Johns Hopkins University; Baltimore, MD USA
,
Fayaz Seifuddin Department of Psychiatry and Behavioral Sciences; Johns Hopkins University, Baltimore, MD USA
,
Brian Herb Epigenetics Center; Department of Medicine, Division of Molecular Medicine; School of Medicine; Johns Hopkins University; Baltimore, MD USA
,
Yuqing Huo Department of Psychiatry and Behavioral Sciences; Johns Hopkins University, Baltimore, MD USA
,
Michael Rongione Department of Psychiatry and Behavioral Sciences; Johns Hopkins University, Baltimore, MD USA
,
Andrew P. Feinberg Epigenetics Center; Department of Medicine, Division of Molecular Medicine; School of Medicine; Johns Hopkins University; Baltimore, MD USA
,
Timothy H. Moran Department of Psychiatry and Behavioral Sciences; Johns Hopkins University, Baltimore, MD USA Correspondence[email protected] [email protected]
&
James B. Potash Epigenetics Center; Department of Medicine, Division of Molecular Medicine; School of Medicine; Johns Hopkins University; Baltimore, MD USA; Department of Psychiatry, University of Iowa Hospitals and Clinics; Iowa City, IA USACorrespondence[email protected] [email protected]
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Pages 1378-1390 | Received 21 Aug 2011, Accepted 13 Sep 2011, Published online: 04 Nov 2011

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Benjamin Hing, Patricia Braun, Zachary A. Cordner, Erin R. Ewald, Laura Moody, Melissa McKane, Virginia L. Willour, Kellie L. Tamashiro & James B. Potash. (2018) Chronic social stress induces DNA methylation changes at an evolutionary conserved intergenic region in chromosome X. Epigenetics 13:6, pages 627-641.
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Fayaz Seifuddin, Gary Wand, Olivia Cox, Mehdi Pirooznia, Laura Moody, Xiaoju Yang, Jonathan Tai, Gretha Boersma, Kellie Tamashiro, Peter Zandi & Richard Lee. (2017) Genome-wide Methyl-Seq analysis of blood-brain targets of glucocorticoid exposure. Epigenetics 12:8, pages 637-652.
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Benjamin Hing, Enrique Ramos, Patricia Braun, Melissa McKane, Dubravka Jancic, Kellie L K Tamashiro, Richard S Lee, Jacob J Michaelson, Todd E Druley & James B Potash. (2015) Adaptation of the targeted capture Methyl-Seq platform for the mouse genome identifies novel tissue-specific DNA methylation patterns of genes involved in neurodevelopment. Epigenetics 10:7, pages 581-596.
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Articles from other publishers (13)

Karilyn E. Sant & Jaclyn M. Goodrich. 2019. Toxicoepigenetics. Toxicoepigenetics 347 377 .
Benjamin Hing, Leela Sathyaputri & James B. Potash. (2018) A comprehensive review of genetic and epigenetic mechanisms that regulate BDNF expression and function with relevance to major depressive disorder . American Journal of Medical Genetics Part B: Neuropsychiatric Genetics 177:2, pages 143-167.
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Jose Vicente Sanchez-Mut, Holger Heyn, Enrique Vidal, Raúl Delgado-Morales, Sebastian Moran, Sergi Sayols, Juan Sandoval, Isidre Ferrer, Manel Esteller & Johannes Gräff. (2017) Whole genome grey and white matter DNA methylation profiles in dorsolateral prefrontal cortex. Synapse 71:6, pages e21959.
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Eugenia Resmini, Alicia Santos, Anna Aulinas, Susan M. Webb, Yolanda Vives-Gilabert, Olivia Cox, Gary Wand & Richard S. Lee. (2016) Reduced DNA methylation of FKBP5 in Cushing’s syndrome. Endocrine 54:3, pages 768-777.
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Michel Neidhart. 2016. DNA Methylation and Complex Human Disease. DNA Methylation and Complex Human Disease 441 456 .
Jose V. Sanchez-Mut & Johannes Gräff. (2015) Epigenetic Alterations in Alzheimer’s Disease. Frontiers in Behavioral Neuroscience 9.
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Kellie L.K. Tamashiro. (2015) Developmental and environmental influences on physiology and behavior — 2014 Alan N. Epstein Research Award. Physiology & Behavior 152, pages 508-515.
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Benjamin Hing, Caleb Gardner & James B. Potash. (2014) Effects of negative stressors on DNA methylation in the brain: Implications for mood and anxiety disorders. American Journal of Medical Genetics Part B: Neuropsychiatric Genetics 165:7, pages 541-554.
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Sanaz Bahari-Javan, Farahnaz Sananbenesi & Andre Fischer. (2014) Histone-acetylation: a link between Alzheimer's disease and post-traumatic stress disorder?. Frontiers in Neuroscience 8.
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Verity F Oliver, Jun Wan, Saurabh Agarwal, Donald J Zack, Jiang Qian & Shannath L Merbs. (2013) A novel methyl-binding domain protein enrichment method for identifying genome-wide tissue-specific DNA methylation from nanogram DNA samples. Epigenetics & Chromatin 6:1.
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J. Wan, V. F. Oliver, H. Zhu, D. J. Zack, J. Qian & S. L. Merbs. (2013) Integrative analysis of tissue-specific methylation and alternative splicing identifies conserved transcription factor binding motifs. Nucleic Acids Research 41:18, pages 8503-8514.
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Jose V. Sanchez-Mut, Ester Aso, Nicolas Panayotis, Ira Lott, Mara Dierssen, Alberto Rabano, Rocio G. Urdinguio, Agustin F. Fernandez, Aurora Astudillo, Jose I. Martin-Subero, Balazs Balint, Mario F. Fraga, Antonio Gomez, Cecile Gurnot, Jean-Christophe Roux, Jesus Avila, Takao K. Hensch, Isidre Ferrer & Manel Esteller. (2013) DNA methylation map of mouse and human brain identifies target genes in Alzheimer’s disease. Brain 136:10, pages 3018-3027.
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Eneda Pjetri, Ulrike Schmidt, Martien J. Kas & Iain C. Campbell. (2012) Epigenetics and eating disorders. Current Opinion in Clinical Nutrition and Metabolic Care 15:4, pages 330-335.
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