1,349
Views
4
CrossRef citations to date
0
Altmetric
Research Papers

Insights into Punic genetic signatures in the southern necropolis of Tharros (Sardinia)

ORCID Icon, ORCID Icon, , , , ORCID Icon, ORCID Icon, , ORCID Icon & ORCID Icon show all
Pages 247-259 | Received 01 Oct 2020, Accepted 25 Mar 2021, Published online: 29 Aug 2021

References

  • Allentoft M, Sikora M, Sjögren K, Rasmussen S, Rasmussen M, Stenderup J, Damgaard PB, et al. 2015. Population genomics of Bronze Age Eurasia. Nature. 522(7555):167–172.
  • Anderson S, Bankier AT, Barrell BG, de Bruijn MH, Coulson AR, Drouin J, Eperon IC, et al. 1981. Sequence and organization of the human mitochondrial genome. Nature. 290(5806):457–465.
  • Andrews RM, Kubacka I, Chinnery PF, Lightowlers RN, Turnbull DM, Howell N. 1999. Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat Genet. 23(2):147.
  • Antonio ML, Gao Z, Moots HM, Lucci M, Candilio F, Sawyer S, Oberreiter V, et al. 2019. Ancient Rome: a genetic crossroads of Europe and the Mediterranean. Science. 366(6466):708–714.
  • Bertoncini S, Blanco-Rojo R, Baeza C, Arroyo-Pardo E, Vaquero MP, Lopez-Parra AM. 2011. A Novel SNaPshot assay to detect genetic mutations related to iron metabolism. Genet Test Mol Biomarkers. 15(3):173–179.
  • Bollongino R, Nehlich O, Richards MP, Orschiedt J, Thomas MG, Sell C, Fajkošova Z, et al. 2013. 2000 Years of parallel societies in stone age central Europe. Science. 342(6157):479–481.
  • Bollongino R, Tresset A, Vigne JD. 2008. Environment and excavation: pre-lab impacts on ancient DNA analyses. CR Palevol . 7(2–3):91–98.
  • Brandt G, Szécsényi-Nagy A, Roth C, Alt KW, Haak W., Roth C. 2015. Human paleogenetics of Europe--the known knowns and the known unknowns. J Hum Evol. 79:73–92.
  • Calò C, Melis A, Vona G, Piras IS. 2008. Sardinian population (Italy): a genetic review. Int J Mod Anthropol. 1:39–64.
  • Caramelli D, Lalueza-Fox C, Vernesi C, Lari M, Casoli A, Mallegni F, Chiarelli B, et al. 2003. Evidence for a genetic discontinuity between Neandertals and 24,000-year-old anatomically modern Europeans. Proc Natl Acad Sci U S A. 100(11):6593–6597.
  • Cavalli-Sforza LL, Menozzi P, Piazza A. 1994. The history and geography of human genes. Princeton, New Jersey, USA: Princeton University Press.
  • Champlot S, Berthelot C, Pruvost M, Bennett EA, Grange T, Geigl EM. 2010. An efficient multistrategy DNA decontamination procedure of PCR reagents for hypersensitive PCR applications. PLOS One. 5(9):e13042.
  • Chiang CWK, Marcus JH, Sidore C, Biddanda A, Al-Asadi H, Zoledziewska M, Pitzalis M, et al. 2018. Genomic history of the Sardinian population. Nat Genet. 50(10):1426–1434.
  • Contu D, Morelli L, Santoni F, Foster JW, Francalacci P, Cucca F. 2008. Y-Chromosome based evidence for pre-neolithic origin of the genetically homogeneous but diverse Sardinian population: inference for association scans. PLOS One. 3(1):e1430.
  • Cooper A, Poinar HN. 2000. Ancient DNA: do it right or not at all. Science. 289(5482):1139.
  • Dabney J, Knapp M, Glocke I, Gansauge M-T, Weihmann A, Nickel B, Valdiosera C, et al. 2013a. Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proc Natl Acad Sci U S A. 110(39):15758–15763.
  • Dabney J, Meyer M, Paabo S. 2013b. Ancient DNA damage. Cold Spring Harb Perspect Biol. 5(7):a012567.
  • Development Core Team R. 2011. R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing. ISBN 3-900051-07-0.
  • Di Gaetano C, Fiorito G, Ortu MF, Rosa F, Guarrera S, Pardini B, Cusi D, et al. 2014. Sardinians genetic background explained by runs of homozygosity and genomic regions under positive selection. PLOS One. 9(3):e91237.
  • Excoffier L, Lischer H. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour. 10(3):564–567.
  • Fariselli AC. 2014. Ricerche archeologiche e strategie di conservazione nella “necropoli meridionale” di Tharros – Capo San Marco: lo scavo del 2012. [Archaeological research and conservation strategies in the southern necropolis of Tharros – Capo San Marco: the 2012 excavations]. In: Fariselli AC, 2013. Da Tharros a Bitia. Nuove prospettive della ricerca archeologica nella Sardegna fenicia e punica. Proceedings of Giornata di Studio, Bologna 25 marzo 2013. Bologna, Italy: Bononia University Press; p. 19–30. Italian
  • Fariselli AC. 2017. Dinamiche di popolamento a Tharros in età punica. La tomba A2 della necropoli meridionale di Capo San Marco: il contesto archeologico [Population dynamics in Tharros during the Punic Age. Tomb A2 from the southern necropolis of Capo San Marco: the archaeological context]. Byrsa. Scritti Sull’antico Oriente Mediterraneo. 29–32:111–125. Italian
  • Fariselli AC. 2018. Alla ricerca della “Cartagine di Sardegna”: considerazioni storico-archeologiche attraverso i nuovi scavi [Looking for the “Carthage of Sardinia”: historical and archaeological considerations through new excavations]. In: Fariselli AC, Secci R, editors. Cartagine fuori da Cartagine. Mobilità nordafricana nel Mediterraneo centro-occidentale fra l’VIII e il II sec. a.C. Proceedings of the International Conference; Nov 30–Dec 1; Ravenna, Italy. Byrsa. Scritti sull’antico Oriente mediterraneo. Vol. 33–34. p. 109–131. Italian
  • Fernandes DM, Mittnik A, Olalde I, Lazaridis I, Cheronet O, Rohland N, Mallick S, et al. 2020. The spread of steppe and Iranian-related ancestry in the islands of the western Mediterranean. Nat Ecol Evol. 4(3):334–345.
  • Fortea J, de la Rasilla M, Garcia-Tabernero A, Gigli E, Rosas A, Lalueza-Fox C. 2008. Excavation protocol of bone remains for Neandertal DNA analysis in El Sidrón Cave (Asturias, Spain)). J Hum Evol. 55(2):353–357.
  • Francalacci P, Morelli L, Angius A, Berutti R, Reinier F, Atzeni R, Pilu R, et al. 2013. Low-pass DNA sequencing of 1200 Sardinians reconstructs European Y-chromosome phylogeny. Science. 341(6145):565–569.
  • Fu Q, Posth C, Hajdinjak M, Petr M, Mallick S, Fernandes D, Furtwangler A, et al. 2016. The genetic history of Ice Age Europe. Nature. 534(7606):200–205.
  • Fulton TL. 2012. Setting up an ancient DNA laboratory. Methods Mol Biol. 840:1–11.
  • Fulton TL, Shapiro B. 2019. Setting up an ancient DNA laboratory. Methods Mol Biol. 1963:1–13.
  • Gamba C, Jones ER, Teasdale MD, McLaughlin RL, Gonzalez-Fortes G, Mattiangeli V, Domboroczki L, et al. 2014. Genome flux and stasis in a five millennium transect of European prehistory. Nat Commun. 5:5257.
  • Gaudio D, Fernandes DM, Schmidt R, Cheronet O, Mazzarelli D, Mattia M, O’Keeffe T, et al. 2019. Genome-wide DNA from degraded petrous bones and the assessment of sex and probable geographic origins of forensic cases. Sci Rep. 9(1):8226.
  • Ghirotto S, Mona S, Benazzo A, Paparazzo F, Caramelli D, Barbujani G. 2010. Inferring genealogical processes from patterns of Bronze-Age and modern DNA variation in Sardinia. Mol Biol Evolution. 27(4):875–886.
  • Haak W, Lazaridis I, Patterson N, Rohland N, Mallick S, Llamas B, Brandt G, et al. 2015. Massive migration from the steppe was a source for Indo-European languages in Europe. Nature. 522(7555):207–211.
  • Herrnstadt C, Elson JL, Fahy E, Preston G, Turnbull DM, Anderson C, Ghosh SS, et al. 2002. Reduced-median-network analysis of complete mitochondrial DNA coding-region sequences for the major African, Asian, and European haplogroups. Am J Hum Genet. 70(5):1152–1171.
  • Hervella M, Rotea M, Izagirre N, Constantinescu M, Alonso S, Ioana M, Lazăr C, et al. 2015. Ancient DNA from South-East Europe reveals different events during early and middle Neolithic influencing the european genetic heritage. Pereira LMSM, editor. PLOS One 10:e0128810.
  • Hofmanová Z, Kreutzer S, Hellenthal G, Sell C, Diekmann Y, Diez-del-Molino D, van Dorp L, et al. 2016. Early farmers from across Europe directly descended from Neolithic Aegeans. Proc Natl Acad Sci U S A. 113(25):6886–6891.
  • Jombart T. 2008. Adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics. 24(11):1403–1405.
  • Jombart T, Devillard S, Balloux F. 2010. Discriminant analysis of principal components: a new method for the analysis of genetically structured populations. BMC Genet. 11:94.
  • Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol. 16(2):111–120.
  • Kloss-Brandstätter A, Pacher D, Schönherr S, Weissensteiner H, Binna R, Specht G, Kronenberg F. 2011. HaploGrep: a fast and reliable algorithm for automatic classification of mitochondrial DNA haplogroups. Hum Mutat. 32(1):25–32.
  • Knapp M, Clarke AC, Horsburgh KA, Matisoo-Smith EA. 2012. Setting the stage – building and working in an ancient DNA laboratory. Ann Anat. 194(1):3–6.
  • Knapp M, Lalueza-Fox C, Hofreiter M. 2015. Re-inventing ancient human DNA. Investig Genet. 6:4.
  • Lazaridis I, Patterson N, Mittnik A, Renaud G, Mallick S, Kirsanow K, Sudmant PH, et al. 2014. Ancient human genomes suggest three ancestral populations for present-day Europeans. Nature. 513(7518):409–413.
  • Llamas B, Valverde G, Fehren-Schmitz L, Weyrich LS, Cooper A, Haak W. 2017. From the field to the laboratory: controlling DNA contamination in human ancient DNA research in the high-throughput sequencing era. STAR Sci Technol Archaeol Res. 3(1):1–14.
  • Lorkiewicz W, Płoszaj T, Jędrychowska-Dańska K, Żądzińska E, Strapagiel D, Haduch E, Szczepanek A, et al. 2015. Between the Baltic and Danubian worlds: the genetic affinities of a Middle Neolithic population from central Poland. PLOS One. 10(2):e0118316.
  • Marcus JH, Posth C, Ringbauer H, Lai L, Skeates R, Sidore C, Beckett J, et al. 2020. Genetic history from the Middle Neolithic to present on the Mediterranean island of Sardinia. Nat Commun. 11(1):939.
  • Mathieson I, Lazaridis I, Rohland N, Mallick S, Patterson N, Roodenberg-Alpaslan S, Harney E, et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature. 528(7583):499–503.
  • Mathieson I, Roodenberg Alpaslan R, Posth C, Szécsény-Nagy A, Rohland N, Mallick S, Olalde I, et al. 2018. The genomic history of southeastern Europe. Nature. 555(7695):197–203.
  • Matisoo-Smith EA, Gosling AL, Boocock J, Kardailsky O, Kurumilian Y, Roudesli-Chebbi S, Badre L, et al. 2016. A European mitochondrial Haplotype identified in ancient Phoenician remains from Carthage, North Africa. PLOS One. 11(5):e0155046.
  • Matisoo-Smith E, Gosling AL, Platt D, Kardailsky O, Prost S, Cameron-Christie S, Collins CJ, et al. 2018. Ancient mitogenomes of Phoenicians from Sardinia and Lebanon: a story of settlement, integration, and female mobility. PLOS One. 13(1):e0190169.
  • Meli F, Fariselli AC, Sineo L. 2020. Il popolamento di Tharros in età fenicia e punica. Analisi antropologiche preliminari dalla necropoli meridionale di Capo San Marco. [The settlement of Tharros in the Phoenician and Punic ages Preliminary anthropological analyses from the southern necropolis of Capo San Marco]. In: Pérez SC, Rodríguez González E, editors. A journey between East and West in the Mediterranean. Proceedings of the 9th International Conference of Phoenician and Punic Studies. Oct 22–27, 2018; Mérida, Spain: Mytra ed. p. 1762–1767. Italian
  • Modi A, Tassi F, Susca RR, Vai S, Rizzi E, De BG, Lugliè C, et al. 2017. Complete mitochondrial sequences from Mesolithic Sardinia. Sci Rep. 7:42869.
  • Olalde I, Schroeder H, Sandoval-Velasco M, Vinner L, Lobon I, Ramirez O, Civit S, et al. 2015. A common genetic origin for early farmers from Mediterranean Cardial and Central European LBK cultures. Mol Biol Evol. 32(12):3132–3142.
  • Olivieri A, Sidore C, Achilli A, Angius A, Posth C, Furtwängler A, Brandini S, et al. 2017. Mitogenome diversity in Sardinians: a genetic window onto an Island’s Past. Mol Biol Evol. 34(5):1230–1239.
  • Ottoni C, Ricaut F-X, Vanderheyden N, Brucato N, Waelkens M, Decorte R. 2011. Mitochondrial analysis of a Byzantine population reveals the differential impact of multiple historical events in South Anatolia. Eur J Hum Genet. 19(5):571–576.
  • Pilli E, Modi A, Serpico C, Achilli A, Lancioni H, Lippi B, Bertoldi F, et al. 2013. Monitoring DNA contamination in handled vs. directly excavated ancient human skeletal remains. PLOS One. 8(1):e52524.
  • Pinhasi R, Fernandes D, Sirak K, Novak M, Connell S, Alpaslan-Roodenberg S, Gerritsen F, et al. 2015. Optimal ancient DNA yields from the inner ear part of the human petrous bone. PLOS One. 10(6):e0129102.
  • Prufer K, Stenzel U, Hofreiter M, Paabo S, Kelso J, Green RE. 2010. Computational challenges in the analysis of ancient DNA. Genome Biol. 11(5):R47.
  • Pruvost M, Schwarz R, Correia VB, Champlot S, Braguier S, Morel N, Fernandez-Jalvo Y, et al. 2007. Freshly excavated fossil bones are best for amplification of ancient DNA. Proc Natl Acad Sci U S A. 104(3):739–744.
  • Richards M, Macaulay V, Hickey E, Vega E, Sykes B, Guida V, Rengo C, et al. 2000. Tracing European founder lineages in the Near Eastern mtDNA pool. Am J Hum Genet. 67(5):1251–1276.
  • Sampietro ML, Gilbert MTP, Lao O, Caramelli D, Lari M, Bertranpetit J, Lalueza-Fox C. 2006. Tracking down human contamination in ancient human teeth. Mol Biol Evol. 23(9):1801–1807.
  • Secci R. 2019. Giovanni Garbini e la “questione punica” [Giovanni Garbini and the “Punic issue”]. In: Callieri PE, Fariselli AC, editors. E non appassisca il tuo germoglio spontaneo. Studi fenici e punici in ricordo di Giovanni Garbini. Biblioteca di «Byrsa». Nuova serie. Scritti sull’antico Oriente mediterraneo. Vol. 11. Lugano: Agorà & Co.; p. 179–209. Italian
  • Serventi P, Cilli E, De FS, Sarno S, Luiselli D, Gruppioni G. 2017. Dinamiche di popolamento a Tharros in età punica. Analisi archeogenetiche preliminari dei reperti osteologici della tomba A2 della necropoli meridionale di Capo San Marco [Population dynamics in Tharros during. The Punic Age. Preliminary archaeogenetic analysis of the osteological findings of the tomb A2 in the southern necropolis of Capo San Marco]. Byrsa. Scritti. sull’antico. Oriente Mediterraneo. 29–32:127–143.
  • Serventi P, Panicucci C, Bodega R, De Fanti S, Sarno S, Fondevila Alvarez M, Brisighelli F, et al. 2018. Iron age Italic population genetics: the Piceni from Novilara (8th–7th century BC). Ann Hum Biol. 45(1):34–43.
  • Sidore C, Busonero F, Maschio A, Porcu E, Naitza S, Zoledziewska M, Mulas A, et al. 2015. Genome sequencing elucidates Sardinian genetic architecture and augments association analyses for lipid and blood inflammatory markers. Nat Genet. 47(11):1272–1281.
  • Sikora M, Carpenter ML, Moreno-Estrada A, Henn BM, Underhill PA, Sánchez-Quinto F, Zara I, et al. 2014. Population genomic analysis of ancient and modern genomes yields new insights into the genetic ancestry of the Tyrolean Iceman and the genetic structure of Europe. PLOS Genet. 10(5):e1004353.
  • Slatkin M. 1995. A measure of population subdivision based on microsatellite allele frequencies.. Genetics. 139:457–462.
  • Stiller M, Knapp M, Stenzel U, Hofreiter M, Meyer M. 2009. Direct multiplex sequencing (DMPS) – a novel method for targeted high-throughput sequencing of ancient and highly degraded DNA. Genome Res. 19(10):1843–1848.
  • Usai A. 2014. Alle origini del fenomeno di Mont’e Prama. La civiltà nuragica [The origins of Mont’e Prama phenomenon. The nuragic civilization]. In: Sinis M, Minoja ME, Usai A, editors. 2014 Le sculture di Mont’e Prama. Contesto, scavi e materiali. Roma: Gangemi Editore;. p. 29–72. Italian
  • Van Oven M, Kayser M. 2009. Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Hum Mutat. 30(2):E386–E394.
  • Venables WN, Ripley BD. 2002. Modern applied statistics with S. 4th ed. New York, NY: Springer.
  • Vigilant L, Pennington R, Harpending H, Kocher TD, Wilson AC. 1989. Mitochondrial DNA sequences in single hairs from a southern African population. Proc Natl Acad Sci U S A. 86(23):9350–9354.
  • Zalloua P, Collins CJ, Gosling A, Biagini SA, Costa B, Kardailsky O, Nigro L, et al. 2018. Ancient DNA of Phoenician remains indicates discontinuity in the settlement history of Ibiza. Sci Rep. 8(1):17567.
  • Zalloua PA, Platt DE, El Sibai M, Khalife J, Makhoul N, Haber M, Xue Y, et al. 2008. Identifying genetic traces of historical expansions: Phoenician footprints in the Mediterranean. Am J Hum Genet. 83(5):633–642.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.