504
Views
0
CrossRef citations to date
0
Altmetric
Human Genetics

Genetic diversity of 23 STR loci of the Guizhou Tujia ethnic minority and the phylogenetic relationships with 22 other populations

, , , ORCID Icon, , , , , & ORCID Icon show all
Pages 345-350 | Received 30 Dec 2022, Accepted 30 May 2023, Published online: 11 Jul 2023

References

  • Castilloa A, PicoaA A, GilaA A, Gusmãob L, Vargasa C. 2019. Genetic variation of 23 STR loci in a Northeast Colombian population (department of Santander). Forensic Sci Int. 7(2019):33–35.
  • Chandra D, Mishra VC, Raina A, Raina V. 2022. Mutation rate evaluation at 21 autosomal STR loci: paternity testing experience. Leg Med. 58:102080. doi: 10.1016/j.legalmed.2022.102080.
  • Chen C, Chen H, Zhang Y, Thomas HR, Frank MH, He Y, Xia R. 2020. TBtools: an integrative Toolkit developed for interactive analyses of big biological data. Mol Plant. 13(8):1194–1202. doi: 10.1016/j.molp.2020.06.009.
  • Chen L, Guo Y, Xiao C, Wu W, Lan Q, Fang Y, Chen J, Zhu B. 2018. Genetic polymorphisms and forensic efficiency of 19 X-chromosomal STR loci for Xinjiang Mongolian population. PeerJ. 6:e5117. doi: 10.7717/peerj.5117.
  • Chen P, Wu J, Luo L, Gao H, Wang M, Zou X, Li Y, Chen G, Luo H, Yu L, et al. 2019. Population genetic analysis of modern and ancient DNA variations yields new insights into the formation, genetic structure, and phylogenetic relationship of Northern Han Chinese. Front Genet. 10:1045. doi: 10.3389/fgene.2019.01045.
  • Chen P, Zou X, Wang B, Wang M, He G. 2019. Genetic admixture history and forensic characteristics of Turkic-speaking Kyrgyz population via 23 autosomal STRs. Ann Hum Biol. 46(6):498–501. doi: 10.1080/03014460.2019.1676918.
  • Edwards A, Civitello A, Hammond HA, Caskey CT. 1991. DNA typing and genetic mapping with trimeric and tetrameric tandem repeats. Am J Hum Genet. 49(4):746–756.
  • Ellegren H. 2004. Microsatellites: simple sequences with complex evolution. Nat Rev Genet. 5(6):435–445. eng. doi: 10.1038/nrg1348.
  • Excoffier L, Lischer HE. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour. 10(3):564–567. doi: 10.1111/j.1755-0998.2010.02847.x.
  • Gao H, Yu J, Feng X, Wu X, Luo L, Li X, Liu C, Chen P. 2021. Genetic polymorphism of 23 autosomal STR loci in Han population from Yuncheng, Shanxi Province. Zhong nan da xue xue bao Yi xue ban. J Cent South Univ Med Sci. 46(4):351–360.
  • Gouy A, Zieger M. 2017. STRAF-A convenient online tool for STR data evaluation in forensic genetics. Forensic Sci Int Genet. 30:148–151. doi: 10.1016/j.fsigen.2017.07.007.
  • Hansen J. 2005. Using SPSS for Windows and Macintosh: analyzing and understanding data. American Statistician. 59(1):113–113. doi: 10.1198/tas.2005.s139.
  • He G, Wang M, Liu J, Hou Y, Wang Z. 2018. Forensic features and phylogenetic analyses of Sichuan Han population via 23 autosomal STR loci included in the Huaxia Platinum System. Int J Legal Med. 132(4):1079–1082. doi: 10.1007/s00414-017-1679-2.
  • Hill CR, Duewer DL, Kline MC, Coble MD, Butler JM. 2013. U.S. population data for 29 autosomal STR loci. Forensic Sci Int Genet. 7(3):e82–e83. doi: 10.1016/j.fsigen.2012.12.004.
  • Jin X, Wei Y, Chen J, Kong T, Mu Y, Guo Y, Dong Q, Xie T, Meng H, Zhang M, et al. 2017. Phylogenic analysis and forensic genetic characterization of Chinese Uyghur group via autosomal multi STR markers. Oncotarget. 8(43):73837–73845. doi: 10.18632/oncotarget.17992.
  • Jobling MA, Gill P. 2004. Encoded evidence: DNA in forensic analysis. Nat Rev Genet. 5(10):739–751. doi: 10.1038/nrg1455.
  • Krzeminska-Ahmadzai U, Buckley B, Loake T, Nicholson C, Beesley D, Randall C. 2021. Population data for 23 autosomal STR loci in White British population. Leg Med. 50:101863. doi: 10.1016/j.legalmed.2021.101863.
  • Kumar A, Kumar R, Kumawat RK, Shrivastava P, Yadav R, Chaubey G. 2021. Population genetic data of 22 autosomal STR loci for the Scheduled Caste population of Rajasthan India. Ann Hum Biol. 48(7–8):598–604. doi: 10.1080/03014460.2021.2009030.
  • Kumar S, Stecher G, Tamura K. 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 33(7):1870–1874. doi: 10.1093/molbev/msw054.
  • Li L, Zou X, Zhang G, Wang H, Su Y, Wang M, He G. 2020. Population genetic analysis of Shaanxi male Han Chinese population reveals genetic differentiation and homogenization of East Asians. Mol Genet Genomic Med. 8(5):e1209. doi: 10.1002/mgg3.1209.
  • Liu Y, Li J, Yue J, Li X, Shi M. 2019a. Genetic polymorphisms and genetic relationship of 24 autosomal STR loci in Gelao and Miao population of Guizhou. Med J Chin PLA. 44(08):682–689.
  • Liu Y, Li X, Guo L, Li X, Shi M. 2019b. Genetic polymorphisms and their relationship of 23 autosomal STR loci in Kazakh population of Xinjiang. Basic Clin Med. 39(02):157–164.
  • Liu Y, Yue J, Li J, Li X, Shi M. 2020. Genetic polymorphisms of 24 short tandemrepeat loci in Hubei Tujia population. Lab Med Clin. 17(13):1800–1804.
  • Ludeman MJ, Zhong C, Mulero JJ, Lagacé RE, Hennessy LK, Short ML, Wang DY. 2018. Developmental validation of GlobalFiler™ PCR amplification kit: a 6-dye multiplex assay designed for amplification of casework samples. Int J Legal Med. 132(6):1555–1573. doi: 10.1007/s00414-018-1817-5.
  • Luo L, Gao H, Yao L, Long F, Zhang H, Zhang L, Liu Y, Yu J, Yu L, Chen P. 2020. Genetic diversity, forensic feature, and phylogenetic analysis of Guizhou Tujia population via 19 X-STRs. Mol Genet Genomic Med. 8(11):e1473. doi: 10.1002/mgg3.1473.
  • Luo L, Yao L, Chai S, Zhang H, Li M, Yu J, Hu X, Li C, Bian Y, Chen P. 2021. Forensic characteristics and population construction of two major minorities from southwest China revealed by a novel 37 Y-STR loci system. R Soc Open Sci. 8(7):210447. doi: 10.1098/rsos.210447.
  • Ropelewski AJ, Nicholas HB, Gonzalez Mendez RR. 2010. MPI-PHYLIP: parallelizing computationally intensive phylogenetic analysis routines for the analysis of large protein families. PLOS One. 5(11):e13999. doi: 10.1371/journal.pone.0013999.
  • Shen H, Guo F, Jin P, Yu J, Jia F, Zhao J, Jiang X. 2014. Genetic polymorphisms of 23 STR loci in Han populations in Liaoning. Chin J Forensic Med. 29(03):259–261.
  • Shrivastava P, Dixit S, Kumawat RK, Srivastava A. 2022. Efficiency analysis of VersaPlex™ 27PY system in Central Indian population: first report from Indian population. Leg Med. 54:101983. doi: 10.1016/j.legalmed.2021.101983.
  • Tran HL, Ta TAM, Nguyen NN, Pham TT, Hoang H, Ha Chu H. 2021. Population genetic data of 22 autosomal STR loci for the Mong people in Vietnam. Leg Med). 48:101825. doi: 10.1016/j.legalmed.2020.101825.
  • Walsh PS, Metzger DA, Higuchi R. 1991. Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. BioTechniques. 10(4):506–513.
  • Wang DY, Gopinath S, Lagacé RE, Norona W, Hennessy LK, Short ML, Mulero JJ. 2015. Developmental validation of the GlobalFiler(®) Express PCR Amplification Kit: a 6-dye multiplex assay for the direct amplification of reference samples. Forensic Sci Int Genet. 19:148–155. doi: 10.1016/j.fsigen.2015.07.013.
  • Wang H, Xin C, Cao H. 2021. Forensic features and genetic structure of 20 autosomal STR loci in the Han population of Ningde City, Southeastern China. Ann Hum Biol. 48(1):56–61. doi: 10.1080/03014460.2020.1854344.
  • Wang M, Wang Z, He G, Jia Z, Liu J, Hou Y. 2018. Genetic characteristics and phylogenetic analysis of three Chinese ethnic groups using the Huaxia Platinum system. Sci Rep. 8(1):2429. doi: 10.1038/s41598-018-20871-7.
  • Wu X, Zheng JL, Lou Y, Wei XH, Wang BJ, Yao J. 2020. Genetic polymorphisms of 20 autosomal STR loci in the Han population of Zhangzhou City, Southeastern China. Leg Med. 46:101726. doi: 10.1016/j.legalmed.2020.101726.
  • Yang J, Hu R. 2018. Application of Goldeneye 25A identification system in the HUI population. Forensic SciInt. 2018(01):72–75.
  • Yao J, Wang BJ. 2016. Genetic variation of 25 Y-chromosomal and 15 autosomal STR Loci in the Han Chinese Population of Liaoning Province, Northeast China. PLOS One. 11(8):e0160415. doi: 10.1371/journal.pone.0160415.
  • Zhang H, Hu X, Liu Z, Luo L, Wang W, Cheng P, Yu L. 2020. Study on OL alleles of 23 STR loci in Guizhou Han population. J Zunyi Med Univ. 43(06):686–691.
  • Zhang J, Zhao Z, Li L, Li X, Liu Z. 2019. Validation of HuaxiaTM Platinum PCR amplification Kit and the STR genetic polymorphism of Shandong Population. Forensic SciInt. 2019(06):41–48.
  • Zhang L. 2015. Population data for 15 autosomal STR loci in the Bouyei ethnic minority from Guizhou Province, Southwest China. Forensic Sci Int Genet. 17:108–109. doi: 10.1016/j.fsigen.2015.04.006.