4,110
Views
17
CrossRef citations to date
0
Altmetric
Research Paper

DNA methylation changes following DNA damage in prostate cancer cells

ORCID Icon, ORCID Icon, ORCID Icon, ORCID Icon, ORCID Icon, ORCID Icon, ORCID Icon, , ORCID Icon, ORCID Icon & ORCID Icon show all
Pages 989-1002 | Received 12 Dec 2018, Accepted 03 Jun 2019, Published online: 17 Jun 2019

References

  • O’Connor MJ. Targeting the DNA damage response in cancer. Mol Cell. 2015 Nov 19;60(4):547–560. PubMed PMID: 26590714; eng.
  • Cann KL, Dellaire G. Heterochromatin and the DNA damage response: the need to relax. Biochem Cell Biol. 2011 Feb;89(1):45–60. PubMed PMID: 21326362; eng.
  • Lorat Y, Schanz S, Schuler N, et al. Beyond repair foci: DNA double-strand break repair in euchromatic and heterochromatic compartments analyzed by transmission electron microscopy. PLoS One. 2012;7(5):e38165. PubMed PMID: 22666473; PubMed Central PMCID: PMC3364237.
  • O’Hagan HM, Mohammad HP, Baylin SB. Double strand breaks can initiate gene silencing and SIRT1-dependent onset of DNA methylation in an exogenous promoter CpG Island. PLoS Genet. 2008 Aug;4(8). PubMed PMID: 18704159; PubMed Central PMCID: PMC2491723. eng. DOI:10.1371/journal.pgen.1000155
  • Russo G, Landi R, Pezone A, et al. DNA damage and repair modify DNA methylation and chromatin domain of the targeted locus: mechanism of allele methylation polymorphism. Sci Rep. 2016 Sep 15;6:33222. PubMed PMID: 27629060; PubMed Central PMCID: PMC5024116. eng.
  • Cuozzo C, Porcellini A, Angrisano T, et al. DNA damage, homology-directed repair, and DNA methylation. PLoS Genet. 2007 Jul;3(7):e110. PubMed PMID: 17616978; PubMed Central PMCID: PMC1913100. eng.
  • Rogakou EP, Pilch DR, Orr AH, et al. DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139. J Biol Chem. 1998 Mar 6;273(10):5858–5868. PubMed PMID: 9488723; Eng.
  • Qiu H, Yashiro M, Shinto O, et al. DNA methyltransferase inhibitor 5-aza-CdR enhances the radiosensitivity of gastric cancer cells. Cancer Sci. 2009 Jan;100(1):181–188. PubMed PMID: 19037991.
  • Hofstetter B, Niemierko A, Forrer C, et al. Impact of genomic methylation on radiation sensitivity of colorectal carcinoma. Int J Radiat Oncol Biol Phys. 2010 Apr;76(5):1512–1519. PubMed PMID: 20338477.
  • Jiang W, Li YQ, Liu N, et al. 5-Azacytidine enhances the radiosensitivity of CNE2 and SUNE1 cells in vitro and in vivo possibly by altering DNA methylation. PLoS One. 2014;9(4). PubMed PMID: 24691157; PubMed Central PMCID: PMC3972231. eng. DOI:10.1371/journal.pone.0093273
  • Kim HJ, Kim JH, Chie EK, et al. DNMT (DNA methyltransferase) inhibitors radiosensitize human cancer cells by suppressing DNA repair activity. Radiat Oncol. 2012;7:39. PubMed PMID: 22429326; PubMed Central PMCID: PMC3375186.
  • Dote H, Cerna D, Burgan WE, et al. Enhancement of in vitro and in vivo tumor cell radiosensitivity by the DNA methylation inhibitor zebularine. Clin Cancer Res. 2005 Jun 15;11(12):4571–4579. PubMed PMID: 15958643.
  • Young A, Berry R, Holloway AF, et al. RNA-seq profiling of a radiation resistant and radiation sensitive prostate cancer cell line highlights opposing regulation of DNA repair and targets for radiosensitization. BMC Cancer. 2014 Nov 4;14:808. PubMed PMID: 25369795; PubMed Central PMCID: PMC4233036.
  • Bullinger L, Ehrich M, Dohner K, et al. Quantitative DNA methylation predicts survival in adult acute myeloid leukemia. Blood. 2010 Jan 21;115(3):636–642. PubMed PMID: 19903898; eng.
  • Fiegl H, Windbichler G, Mueller-Holzner E, et al. HOXA11 DNA methylation – a novel prognostic biomarker in ovarian cancer. Int J Cancer. 2008 Aug 1;123(3):725–729. PubMed PMID: 18478570; eng.
  • Fox KR, Grigg GW, Waring MJ. Sequence-selective binding of phleomycin to DNA. Biochem J. 1987 May 1;243(3):847–851. PubMed PMID: 2444208; PubMed Central PMCID: PMC1147934. eng.
  • Brieger J, Mann SA, Pongsapich W, et al. Pharmacological genome demethylation increases radiosensitivity of head and neck squamous carcinoma cells. Int J Mol Med. 2012 Mar;29(3):505–509. PubMed PMID: 22109647; eng.
  • Ha K, Lee GE, Palii SS, et al. Rapid and transient recruitment of DNMT1 to DNA double-strand breaks is mediated by its interaction with multiple components of the DNA damage response machinery. Hum Mol Genet. 2011 Jan 1;20(1):126–140. PubMed PMID: 20940144; PubMed Central PMCID: PMC3000680. Eng.
  • Cortez D, Wang Y, Qin J, et al. Requirement of ATM-dependent phosphorylation of brca1 in the DNA damage response to double-strand breaks. Science (New York, NY). 1999 Nov 5;286(5442):1162–1166. PubMed PMID: 10550055; eng.
  • Chi HC, Tsai CY, Tsai MM, et al. Impact of DNA and RNA methylation on radiobiology and cancer progression. Int J Mol Sci. 2018 Feb;19(2):555. PubMed PMID: 29439529; PubMed Central PMCID: PMC5855777. eng.
  • Chen X, Liu L, Mims J, et al. Analysis of DNA methylation and gene expression in radiation-resistant head and neck tumors. Epigenetics. 2015 May 3;10(6):545–561. PubMed PMID: PMC4622425.
  • Seo J, Kim SC, Lee H-S, et al. Genome-wide profiles of H2AX and γ-H2AX differentiate endogenous and exogenous DNA damage hotspots in human cells. Nucleic Acids Res. 2012 Mar 29;2012. DOI:10.1093/nar/gks287
  • Takata H, Hanafusa T, Mori T, et al. Chromatin compaction protects genomic DNA from radiation damage. PLoS One. 2013;8(10):e75622. PubMed PMID: 24130727; PubMed Central PMCID: PMC3794047. eng.
  • Mori R, Matsuya Y, Yoshii Y, et al. Estimation of the radiation-induced DNA double-strand breaks number by considering cell cycle and absorbed dose per cell nucleus. J Radiat Res. 2018 May;59(3):253–260. PubMed PMID: 29800455; PubMed Central PMCID: PMC5967466. eng.
  • Antwih DA, Gabbara KM, Lancaster WD, et al. Radiation-induced epigenetic DNA methylation modification of radiation-response pathways. Epigenetics. 2013 Aug;8(8):839–848. PubMed PMID: 23880508; PubMed Central PMCID: PMC3883787.
  • Mathios D, Lim M, Ha P, et al., inventor; Justia, assignee. Use of the ZMIZ1 marker in directing treatment and predicting survival in cancer. United States patent 20160273050. 2016 Mar 16.
  • Se YB, Kim SH, Kim JY, et al. Underexpression of HOXA11 is associated with treatment resistance and poor prognosis in glioblastoma. Cancer Res Treat. 2017 Apr;49(2):387–398. PubMed PMID: 27456940; PubMed Central PMCID: PMC5398402. eng.
  • Stresemann C, Lyko F. Modes of action of the DNA methyltransferase inhibitors azacytidine and decitabine. Int J Cancer. 2008 Jul 1;123(1):8–13. PubMed PMID: 18425818; eng.
  • Palii SS, Van Emburgh BO, Sankpal UT, et al. DNA methylation inhibitor 5-Aza-2ʹ-deoxycytidine induces reversible genome-wide DNA damage that is distinctly influenced by DNA methyltransferases 1 and 3B. Mol Cell Biol. 2008 Jan;28(2):752–771. PubMed PMID: 17991895; PubMed Central PMCID: PMC2223421. Eng.
  • Kiziltepe T, Hideshima T, Catley L, et al. 5-Azacytidine, a DNA methyltransferase inhibitor, induces ATR-mediated DNA double-strand break responses, apoptosis, and synergistic cytotoxicity with doxorubicin and bortezomib against multiple myeloma cells. Mol Cancer Ther. 2007 Jun;6(6):1718–1727. PubMed PMID: 17575103; eng.
  • Komashko VM, Farnham PJ. 5-azacytidine treatment reorganizes genomic histone modification patterns. Epigenetics. 2010 Apr;5(3):229–240. PubMed PMID: 20305384; eng.
  • Ayrapetov MK, Gursoy-Yuzugullu O, Xu C, et al. DNA double-strand breaks promote methylation of histone H3 on lysine 9 and transient formation of repressive chromatin. Proc Natl Acad Sci U S A. 2014 Jun 24;111(25):9169–9174. PubMed PMID: 24927542; PubMed Central PMCID: PMC4078803. Eng.
  • Chiappinelli Katherine B, Strissel Pamela L, Desrichard A, et al. Inhibiting DNA methylation causes an interferon response in cancer via dsRNA including endogenous retroviruses. Cell. 2015 Aug 27;162(5):974–986.
  • Mortusewicz O, Schermelleh L, Walter J, et al. Recruitment of DNA methyltransferase I to DNA repair sites. Proc Natl Acad Sci U S A. 2005 Jun 21;102(25):8905–8909. PubMed PMID: 15956212; PubMed Central PMCID: PMC1157029.
  • Maksimovic J, Gordon L, Oshlack A. SWAN: subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips. Genome Biol. 2012 Jun 15;13(6):R44. PubMed PMID: 22703947; PubMed Central PMCID: PMC3446316. eng.
  • Phillips JL, Taberlay PC, Woodworth AM, et al. Distinct mechanisms of regulation of the ITGA6 and ITGB4 genes by RUNX1 in myeloid cells. J Cell Physiol. 2018 Apr;233(4):3439–3453. PubMed PMID: 28926098; eng.