Application of Laser Microdissection to plant pathogenic and symbiotic interactions

References

• Abad , P , Gouzy , J , Aury , JM , Castagnone-Sereno , P , Danchin , EG , Deleury , E , Perfus-Barbeoch , L , Anthouard , V , Artiguenave , F , Blok , VC , Caillaud , MC , Coutinho , PM , Dasilva , C , De Luca , F , Deau , F , Esquibet , M , Flutre , T , Goldstone , JV , Hamamouch , N , Hewezi , T , Jaillon , O , Jubin , C , Leonetti , P , Magliano , M , Maier , TR , Markov , GV , McVeigh , P , Pesole , G , Poulain , J , Robinson-Rechavi , M , Sallet , E , Ségurens , B , Steinbach , D , Tytgat , T , Ugarte , E , van Ghelder , C , Veronico , P , Baum , TJ , Blaxter , M , Bleve-Zacheo , T , Davis , EL , Ewbank , JJ , Favery , B , Grenier , E , Henrissat , B , Jones , JT , Laudet , V , Maule , AG , Quesneville , H , Rosso , MN , Schiex , T , Smant , G , Weissenbach , J and Wincker , P . 2008 . Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita . Nat Biotech , 26 : 909 – 915 .
   PubMed Web of Science ®Google Scholar
• Alkharouf , NW , Klink , VP , Chouikha , IB , Beard , HS , MacDonald , MH , Meyer , S , Knap , HT , Khan , R and Matthews , BF . 2006 . Timecourse microarray analyses reveals global changes in gene expression of susceptible Glycine max (soybean) roots during infection by Heterodera glycines (soybean cyst nematode) . Planta , 224 : 838 – 852 .
   PubMed Web of Science ®Google Scholar
• Asano , T , Masumura , T , Kusano , H , Kikuchi , S , Kurita , A , Shimada , H and Kadowaki , K . 2002 . Construction of a specialized cDNA library from plant cells isolated by laser capture microdissection: Toward comprehensive analysis of the genes expressed in the rice phloem . Plant J , 32 : 401 – 408 .
   Google Scholar
• Balestrini , R and Bonfante , P . 2005 . The interface compartment in arbuscular mycorrhizae: A special type of plant cell wall? . Plant Biosyst , 139 : 8 – 15 .
   Web of Science ®Google Scholar
• Balestrini , R and Lanfranco , L . 2006 . Fungal and plant gene expression in arbuscular mycorrhizal symbiosis . Mycorrhiza , 16 : 509 – 524 .
   PubMed Web of Science ®Google Scholar
• Balestrini , R , Gómez-Ariza , J , Lanfranco , L and Bonfante , P . 2007 . Laser Microdissection reveals that transcripts for five plant and one fungal phosphate transporter genes are contemporaneously present in arbusculated cells . Mol Plant-Microbe Interact , 20 ( 9 ) : 1055 – 1062 .
   PubMed Web of Science ®Google Scholar
• Balestrini , R and Bonfante , P . 2008 . Laser Microdissection (LM): Applications to plant materials . Plant Biosyst , 142 : 331 – 336 .
   Web of Science ®Google Scholar
• Birnbaum , K , Shasha , DE , Wang , JY , Jung , JW , Lambert , GM , Galbraith , DW and Benfey , PN . 2003 . A gene expression map of the Arabidopsis root . Science , 302 : 1956 – 1960 .
   PubMed Web of Science ®Google Scholar
• Brandt , SP . 2005 . Microgenomics: gene expression analysis at the tissue-specific and single-cell levels . J Exp Bot , 56 : 495 – 505 .
   PubMed Web of Science ®Google Scholar
• Bucher , M , Brunner , S , Zimmermann , P , Zardi , GI , Amrhein , N , Willmitzer , L and Riesmeier , JW . 2002 . The expression of an extensin-like protein correlates with cellular tip growth in tomato1 . Plant Physiol , 128 : 911 – 923 .
   PubMedGoogle Scholar
• Cai , S and Lashbrook , CC . 2006 . Laser capture microdissection of plant cells from tape-transferred paraffin sections promotes recovery of structurally intact RNA for global gene profiling . Plant J , 48 : 628 – 637 .
   PubMed Web of Science ®Google Scholar
• Casson , S , Spencer , M , Walker , K and Lindsey , K . 2005 . Laser capture microdissection for the analysis of gene expression during embryogenesis of Arabidopsis . Plant J , 42 : 111 – 123 .
   PubMed Web of Science ®Google Scholar
• Day , RC , Grossniklaus , U and Macknight , RC . 2005 . Be more specific! Laser-assisted microdissection of plant cells . Trends Plant Sci , 10 : 397 – 405 .
   PubMed Web of Science ®Google Scholar
• Day , RC , McNoe , LA and Macknight , RC . 2006 . Transcript analysis of laser microdissected plant cells . Physiol Plant , 129 ( 2 ) : 267 – 282 .
   Google Scholar
• Day RC McNoe L Macknight RC 2007 Evaluation of global RNA amplification and its use for high-throughput transcript analysis of laser-microdissected endosperm Int J Plant Genomics
   PubMedGoogle Scholar
• Dembinsky , D , Woll , C , Saleem , M , Liu , Y , Fu , Y , Borsuk , LA , Lamkemeyer , T , Fladerer , C , Madlung , J , Barbazuk , B , Nordheim , A , Nettleton , D , Schnable , PS and Hochholdinger , F . 2007 . Transcriptomic and proteomic analyses of pericycle cells of the maize (Zea mays L) primary root . Plant Physiol , 145 : 575 – 588 .
   PubMed Web of Science ®Google Scholar
• Dillon , D , Zheng , K and Costa , J . 2001 . Rapid, efficient genotyping of clinical tumor samples by laser-capture microdissection/PCR/SSCP . Exp Mol Pathol , 70 : 195 – 200 .
   PubMedGoogle Scholar
• Emmert-Buck , MR , Bonner , RF , Smith , PD , Chuaqui , RF , Zhuang , Z , Goldstein , SR , Weiss , RA and Liotta , LA . 1996 . Laser capture microdissection . Science , 274 : 998 – 1001 .
   PubMed Web of Science ®Google Scholar
• Emrich , SJ , Barbazuk , WB , Li , L and Schnable , PS . 2007 . Gene discovery and annotation using LCM-454 transcriptome sequencing . Genome Res. , 17 : 69 – 73 .
   PubMed Web of Science ®Google Scholar
• Endo , BY . 1965 . Histological responses of resistant and susceptible soybean varieties, and backcross progeny to entry development of Heterodera glycines . Phytopathology , 55 : 375 – 381 .
   Web of Science ®Google Scholar
• Endo , BY . 1991 . Ultrastructure of initial responses of resistant and susceptible soybean roots to infection by Heterodera glycines . Rev Nematol , 14 : 73 – 94 .
   Google Scholar
• Espina , V , Milia , J , Wu , G , Cowherd , S and Liotta , LA . 2006 . Laser capture microdissection . Methods Mol Biol , 319 : 213 – 229 .
   PubMedGoogle Scholar
• Espina , V , Heiby , M , Pierobon , M and Liotta , LA . 2007 . Laser capture microdissection technology . Expert Rev Mol Diagn , 7 : 647 – 657 .
   PubMed Web of Science ®Google Scholar
• Fink , L and Bohle , RM . 2005 . Laser microdissection and RNA analysis . Methods Mol Biol , 293 : 167 – 185 .
   PubMedGoogle Scholar
• Galbraith , DW and Birnbaum , K . 2006 . Global studies of cell type-specific gene expression in plants . Ann Rev Plant Biol , 57 : 451 – 475 .
   PubMed Web of Science ®Google Scholar
• Genre , A , Chabaud , M , Timmers , T , Bonfante , P and Barker , DG . 2005 . Arbuscular mycorrhizal fungi elicit a novel intracellular apparatus in Medicago truncatula root epidermal cells before infection . Plant Cell , 17 : 3489 – 99 .
   PubMed Web of Science ®Google Scholar
• Genre , A , Chabaud , M , Faccio , A , Barker , DG and Bonfante , P . 2008 . Prepenetration apparatus assembly precedes and predicts the colonization patterns of arbuscular mycorrhizal fungi within the root cortex of both Medicago truncatula and Daucus carota . Plant Cell , 20 : 1407 – 1420 .
   PubMed Web of Science ®Google Scholar
• Gomez SK , Javot H , Deewatthanawong P , Torres-Jerez I , Tang Y , Blancaflor EB , Udvardi MK , Harrison MJ . 2009 . Medicago truncatula and Glomus intraradices gene expression in cortical cells harboring arbuscules in the arbuscular mycorrhizal symbiosis . BMC Plant Biol . 9 : 10 doi 10.1186/1471-2229-10 .
   Google Scholar
• Gomez SK , Harrison MJ . 2009 . Laser microdissection and its application to analyze gene expression in arbuscular mycorrhizal symbiosis . Pest Manag Sci . www.interscience.wiley.com. doi 10.1002/ps.1715
   PubMedGoogle Scholar
• Guether M , Balestrini R , Hannah M , He J , Udvardi M , Bonfante P 2009 Genome-wide reprogramming of regulatory networks, transport, cell wall and membrane biogenesis during arbuscular mycorrhizal symbiosis in Lotus japonicus New Phytol doi: 101111/j1469-8137200802725x In press
   Google Scholar
• Harrison , MJ , Dewbre , GR and Liu , J . 2002 . A phosphate transporter from Medicago truncatula involved in the acquisition of phosphate released by arbuscular mycorrhizal fungi . Plant Cell , 14 : 2413 – 2429 .
   PubMed Web of Science ®Google Scholar
• Haseloff , J , Siemering , KR , Prasher , DC and Hodge , S . 1997 . Removal of a cryptic intron and subcellular localization of green fluorescent protein are required to mark transgenic Arabidopsis plants brightly . PNAS , 94 : 2122 – 2127 .
   PubMed Web of Science ®Google Scholar
• Hobza , R and Vyskot , B . 2007 . Laser microdissection-based analysis of plant sex chromosomes . Methods Cell Biol , 82 : 433 – 453 .
   PubMedGoogle Scholar
• Inada , N and Wildemuth , MC . 2005 . Novel tissue preparation method and cell-specific marker for laser microdissection of Arabidopsis mature leaf . Planta , 221 : 9 – 16 .
   PubMed Web of Science ®Google Scholar
• Iscove , NN , Barbara , M , Gu , M , Gibson , M , Modi , C and Winegarden , N . 2002 . Representation is faithfully preserved in global cDNA amplified exponentially from sub-picogram quantities of mRNA . Nat Biotech , 20 : 940 – 943 .
   PubMed Web of Science ®Google Scholar
• Isenberg , G , Bielser , W , Meier-Ruge , W and Remy , E . 1976 . Cell surgery by laser micro-dissection: A preparative method . J Microsc , 107 : 19 – 24 .
   PubMed Web of Science ®Google Scholar
• Ithal , N , Recknor , J , Nettleton , D , Maier , T , Baum , TJ and Mitchum , MG . 2007 . Developmental transcript profiling of cyst nematode feeding cells in soybean roots . Mol Plant-Microbe Interac , 20 : 510 – 525 .
   PubMed Web of Science ®Google Scholar
• Jefferson , RA , Kavanagh , TA and Bevan , MW . 1987 . GUS fusions: β-glucuronidase as a sensitive and versatile gene fusion marker in higher plants . EMBO J , 6 : 3901 – 3907 .
   PubMed Web of Science ®Google Scholar
• Jiang , K , Zhang , S , Lee , S , Tsai , G , Kim , K , Huang , H , Chilcott , C , Zhu , T and Feldman , LJ . 2006 . Transcription profile analyses identify genes and pathways central to root cap functions in maize . Plant Mol Biol , 60 : 343 – 363 .
   PubMed Web of Science ®Google Scholar
• Kerk , NM , Ceserani , T , Tausta , SL , Sussex , IM and Nelson , TM . 2003 . Laser capture microdissection of cells from plant tissues . Plant Physiol , 132 : 27 – 35 .
   PubMed Web of Science ®Google Scholar
• Kim , YH , Riggs , RD and Kim , KS . 1987 . Structural changes associated with resistance of soybean to Heterodera glycines . J Nematol , 19 : 177 – 187 .
   PubMed Web of Science ®Google Scholar
• Khan , R , Alkharouf , N , Beard , HS , MacDonald , M , Chouikha , C , Meyer , S , Grefenstette , J , Knap , H and Matthews , B . 2004 . Microarray analysis of gene expression in soybean roots susceptible to the soybean cyst nematode two days post invasion . J Nematol , 36 : 241 – 248 .
   PubMedGoogle Scholar
• Klink , VP , Alkharouf , N , MacDonald , M and Matthews , B . 2005 . Laser capture microdissection (LCM) and expression analyses of Glycine max (soybean) syncytium containing root regions formed by the plant pathogen Heterodera glycines (soybean cyst nematode) . Plant Mol Biol , 59 : 965 – 979 .
   PubMed Web of Science ®Google Scholar
• Klink , VP , Overall , CC , Alkharouf , NW , MacDonald , MH and Matthews , BF . 2007a . Laser capture microdissection (LCM) and comparative microarray expression analysis of syncytial cells isolated from incompatible and compatible soybean (Glycine max) roots infected by the soybean cyst nematode (Heterodera glycines) . Planta , 226 : 1389 – 1409 .
   PubMed Web of Science ®Google Scholar
• Klink , VP , Overall , CC , Alkharouf , NW , MacDonald , MH and Matthews , BF . 2007b . A time-course comparative microarray analysis of an incompatible and compatible response by Glycine max (soybean) to Heterodera glycines (soybean cyst nematode) infection . Planta , 226 : 1423 – 1447 .
   PubMed Web of Science ®Google Scholar
• Klink , VP and Matthews , BF . 2008 . The use of laser capture microdissection to study the infection of Glycine max (soybean) by Heterodera glycines (soybean cyst nematode) . Plant Signaling Behav , 3 : 206
   Google Scholar
• Köck , M , Stenzel , I and Zimmer , A . 2006 . Tissue-specific expression of tomato Ribonuclease LX during phosphate starvation-induced root growth . J Exp Bot , 57 : 3717 – 3726 .
   PubMedGoogle Scholar
• Küster , H , Vieweg , MF , Manthey , K , Baier , MC , Hohnjec , N and Perlick , AM . 2007 . Identification and expression regulation of symbiotically activated legume genes . Phytochem , 68 : 8 – 18 .
   PubMed Web of Science ®Google Scholar
• Liu , Y , Lamkemeyer , T , Jakob , A , Mi , G , Zhang , F , Nordheim , A and Hochholdinger , F . 2006 . Comparative proteome analyses of maize (Zea mays L) primary roots prior to lateral root initiation reveal differential protein expression in the lateral root initiation mutant rum1 . Proteomics , 6 : 4300 – 4308 .
   PubMedGoogle Scholar
• Meimberg , H , Thalhammer , S , Brachmann , A , Muller , B , Eichacker , LA , Heckl , WM and Heubl , G . 2003 . Selection of chloroplasts by laser microbeam microdissection for single-chloroplast PCR . Biotechniques , 34 : 1238 – 1243 .
   PubMed Web of Science ®Google Scholar
• Nakazono , M , Qiu , F , Borsuk , LA and Schable , PS . 2003 . Laser capture microdissection, a tool for the global analysis of gene expression in specific plant cell types: Identification of genes expressed differentially in epidermal cells or vascular tissue of maize . Plant Cell , 15 : 583 – 596 .
   PubMed Web of Science ®Google Scholar
• Nehls , U , Mikolajewski , S , Magel , E and Hampp , R . 2001 . Carbohydrate metabolism in ectomycorrhizas: gene expression, monosaccharide transport and metabolic control . New Phytol , 150 : 533 – 541 .
   Web of Science ®Google Scholar
• Nelson , T , Tausta , SL , Gandotra , N and Liu , T . 2006 . Laser microdissection of plant tissue: What you see is what you get . Ann Rev Plant Biol , 57 : 181 – 201 .
   PubMed Web of Science ®Google Scholar
• Ohtsu , K , Takahashi , H , Schnable , PS and Nakazono , M . 2007 . Cell type-specific gene expression profiling in plants by using a combination of laser microdissection and high-throughput technologies . Plant Cell Physiol , 48 : 3 – 7 .
   PubMed Web of Science ®Google Scholar
• Parniske , M . 2008 . Arbuscular mycorrhiza: the mother of plant root endosymbioses . Nat Rev Microbiol , 6 : 763 – 775 .
   PubMed Web of Science ®Google Scholar
• Pérez-de-Luque , A , Moreno , MT and Rubiales , D. 2008 . Host plant resistance against broomrapes (Orobanche spp): Defence reactions and mechanisms of resistance . Ann Appl Biol , 152 : 131 – 141 .
   Google Scholar
• Petalidis , L , Bhattacharyya , S , Morris , GA , Collins , VP , Freeman , TC and Lyons , PA . 2003 . Global amplification of mRNA by template-switching PCR: linearity and application to microarray analysis . Nucleic Acids Res , 31 ( 22 ) : 142
   PubMedGoogle Scholar
• Ramsay , K , Wang , Z and Jones , MGK . 2004 . Using laser capture microdissection to study gene expression in early stages of giant cells induced by root-knot nematodes . Mol Plant Pathol , 5 : 587 – 592 .
   PubMedGoogle Scholar
• Ramsay , K , Jones , MGK and Wang , Z . 2006 . Laser capture microdissection: A novel approach to microanalysis of plant-microbe interactions . Mol Plant Pathol , 7 : 429 – 43 .
   PubMed Web of Science ®Google Scholar
• Riggs , RD , Kim , KS and Gipson , I . 1973 . Ultrastructural changes in Peking soybeans infected with Heterodera glycines . Phytopathol , 63 : 76 – 84 .
   Web of Science ®Google Scholar
• Schad , M , Lipton , MS , Giavalisco , P , Smith , RD and Kehr , J . 2005a . Evaluation of two-dimensional electrophoresis and liquid chromatography–tandem mass spectrometry for tissue-specific protein profiling of laser-microdissected plant samples . Electrophoresis , 26 : 2729 – 2738 .
   PubMed Web of Science ®Google Scholar
• Schad , M , Mungur , R , Fiehn , O and Kehr , J . 2005b . Metabolic profiling of laser microdissected vascular bundles of Arabidopsis thaliana . Plant Meth , 1 : 2
   PubMed Web of Science ®Google Scholar
• Schneider , B and Hölscher , D . 2006 . Laser microdissection and cryogenic nuclear magnetic resonance spectroscopy: An alliance for cell type-specific metabolite profiling . Planta , 225 : 763 – 770 .
   PubMedGoogle Scholar
• Scutt , CP , Kamisugi , Y , Sakai , F and Gilmartin , PM . 1997 . Laser isolation of plant sex chromosomes: Studies on the DNA composition of the X and Y sex chromosomes of Silene latifolia . Genome , 40 : 705 – 715 .
   PubMed Web of Science ®Google Scholar
• Siciliano , V , Genre , A , Balestrini , R , Cappellazzo , G , DeWitt , P and Bonfante , P . 2007 . Transcriptome analysis of arbuscular mycorrhizal roots during development of the prepenetration apparatus . Plant Physiol , 144 : 1455 – 1466 .
   PubMed Web of Science ®Google Scholar
• Takagi , H , Shibutani , M , Kato , N , Fujita , H , Lee , K-Y , Takigami , S , Mitsumori , K and Hirose , M . 2004 . Microdissected region-specific gene expression analysis with methacarn-fixed, paraffin-embedded tissues by real-time RT-PCR . J Histochem Cytochem , 52 : 903 – 913 .
   PubMed Web of Science ®Google Scholar
• Tang , W , Coughlan , S , Crane , E , Beatty , M and Duvick , J . 2006 . The application of laser microdissection to in planta gene expression profiling of the maize anthracnose stalk rot fungus Colletotrichum graminicola . Mol Plant-Microbe Interact , 19 : 1240 – 1250 .
   PubMed Web of Science ®Google Scholar
• Tao , Y , Xie , Z , Chen , W , Glazebrook , J , Chang , HS , Han , B , Zhu , T , Zou , G and Katagiri , F . 2003 . Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae . Plant Cell , 15 : 317 – 330 .
   PubMed Web of Science ®Google Scholar
• Wise , RP , Moscou , MJ , Bogdanove , AJ and Whitham , SA . 2007 . Transcripts profiling in host-pathogen interactions . Annu Rev Phytopathol , 45 : 329 – 369 .
   PubMedGoogle Scholar
• Woll , K , Borsuk , LA , Stransky , H , Nettleton , D , Schnable , PS and Hochholdinger , F . 2005 . Isolation, characterization, and pericycle-specific transcriptome analyses of the novel maize lateral and seminal root initiation mutant rum1 . Plant Physiol , 139 : 1255 – 1267 .
   PubMed Web of Science ®Google Scholar