Developmental- and stress-mediated expression analysis of cinnamoyl-CoA reductase 1 (CCR1) from Hibiscus cannabinus

References

• Adamson P, Marshall CJ, Hall A, Tilbrook PA. 1992. Post-translational modifications of p21rho proteins. J Biol Chem. 267:20033–20038.
   PubMed Web of Science ®Google Scholar
• Bae H, Kim S-H, Kim MS, Sicher RC, Lary D, Strem MD, Natarajan S, Bailey BA. 2008. The drought response of Theobroma cacao (cacao) and the regulation of genes involved in polyamine biosynthesis by drought and other stresses. Plant Physiol Biochem. 46:174–188.
   PubMed Web of Science ®Google Scholar
• Barakat A, Yassin NBM, Park JS, Choi A, Herr J, Carlson JE. 2011. Comparative and phylogenomic analyses of cinnamoyl-CoA reductase and cinnamoyl-CoA-reductase-like gene family in land plants. Plant Sci 181:249–257. doi:10.1016/j.plantsci.2011.05.012
   PubMed Web of Science ®Google Scholar
• Baucher M, Halpin C, Petit-Conil M, Boerjan W. 2003. Lignin: genetic engineering and impact on pulping. Crit Rev Biochem Mol Biol. 38:305–350. doi:10.1080/10409230391036757
   PubMed Web of Science ®Google Scholar
• Boerjan W, Ralph J, Baucher M. 2003. Lignin biosynthesis. Annu Rev Plant Biol. 54:519–546. doi:10.1146/annurev.arplant.54.031902.134938
   PubMed Web of Science ®Google Scholar
• Charollais J, Van Der Goot FG. 2009. Palmitoylation of membrane proteins (Review). Mol Membr Biol. 26:55–66. doi:10.1080/09687680802620369
   PubMed Web of Science ®Google Scholar
• Cole C, Barber JD, Barton GJ. 2008. The Jpred 3 secondary structure prediction server. Nucleic Acids Res. 36:W197–W201. doi:10.1093/nar/gkn238
   PubMed Web of Science ®Google Scholar
• Dempsey J. 1975. Fiber crops. Gainesville, FL: Univ Press Gainesville. p. 203–302.
   Google Scholar
• Escamilla-Treviño LL, Shen H, Uppalapati SR, Ray T, Tang Y, Hernandez T, Yin Y, Xu Y, Dixon RA. 2010. Switchgrass (Panicum virgatum) possesses a divergent family of cinnamoyl CoA reductases with distinct biochemical properties. New Phytol. 185:143–155.
   PubMed Web of Science ®Google Scholar
• Fan L, Linker R, Gepstein S, Tanimoto E, Yamamoto R, Neumann PM. 2006. Progressive inhibition by water deficit of cell wall extensibility and growth along the elongation zone of maize roots is related to increased lignin metabolism and progressive stelar accumulation of wall phenolics. Plant Physiol. 140:603–612.
   PubMed Web of Science ®Google Scholar
• Ghosh R, Choi B, Cho B-K, Lim H-S, Park S-U, Bae H-J, Natarajan S, Bae H. 2014. Characterization of developmental- and stress-mediated expression of cinnamoyl-CoA reductase in kenaf (Hibiscus cannabinus L.). Sci World J. 2014:601845.
   Web of Science ®Google Scholar
• Ghosh R, Choi BS, Jeong M, Bae DW, Shin SC, Park SU, Lim H, Kim J, Bae H. 2012. Comparative transcriptional analysis of caffeoyl-coenzyme A 3- O -methyltransferase from Hibiscus cannabinus L., during developmental stages in various tissues and stress regulation. Plant Omics. 5:184–193.
   Web of Science ®Google Scholar
• Hu Y, Di P, Chen J, Xiao Y, Zhang L, Chen W. 2011. Isolation and characterization of a gene encoding cinnamoyl-CoA reductase from Isatis indigotica Fort. Mol Biol Rep. 38:2075–2083. doi:10.1007/s11033-010-0080-8
   PubMed Web of Science ®Google Scholar
• Kahsay RY, Gao G, Liao L. 2005. An improved hidden Markov model for transmembrane protein detection and topology prediction and its applications to complete genomes. Bioinformatics. 21:1853–1858.
   PubMed Web of Science ®Google Scholar
• Kawasaki T, Koita H, Nakatsubo T, Hasegawa K, Wakabayashi K, Takahashi H, Umemura K, Umezawa T, Shimamoto K. 2006. Cinnamoyl-CoA reductase, a key enzyme in lignin biosynthesis, is an effector of small GTPase Rac in defense signaling in rice. Proc Natl Acad Sci USA. 103:230–235. doi:10.1073/pnas.0509970102
   PubMed Web of Science ®Google Scholar
• Kelley LA, Sternberg MJE. 2009. Protein structure prediction on the Web: a case study using the Phyre server. Nat Protoc. 4:363–371. doi:10.1038/nprot.2009.2
   PubMed Web of Science ®Google Scholar
• Koutaniemi S, Warinowski T, könen A Kär, Alatalo E, Fossdal CG, Saranpää P, Laakso T, Fagerstedt KV, Simola LK, Paulin L, et al. 2007. Expression profiling of the lignin biosynthetic pathway in Norway spruce using EST sequencing and real-time RT-PCR. Plant Mol Biol. 65:311–328. doi:10.1007/s11103-007-9220-5
   PubMed Web of Science ®Google Scholar
• Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm a, Lopez R, et al. 2007. Clustal W and Clustal X version 2.0. Bioinformatics. 23:2947–2948. doi:10.1093/bioinformatics/btm404
   PubMed Web of Science ®Google Scholar
• Larsen K. 2004. Cloning and characterization of a ryegrass (Lolium perenne) gene encoding cinnamoyl-CoA reductase (CCR). Plant Sci. 166:569–581. doi:10.1016/j.plantsci.2003.09.026
   Web of Science ®Google Scholar
• Lauvergeat V, Lacomme C, Lacombe E, Lasserre E, Roby D, Grima-Pettenati J. 2001. Two cinnamoyl-CoA reductase (CCR) genes from Arabidopsis thaliana are differentially expressed during development and in response to infection with pathogenic bacteria. Phytochemistry. 57:1187–1195. doi:10.1016/S0031-9422(01)00053-X
   PubMed Web of Science ®Google Scholar
• Li L, Cheng X, Lu S, Nakatsubo T, Umezawa T, Chiang VL. 2005. Clarification of cinnamoyl co-enzyme A reductase catalysis in monolignol biosynthesis of Aspen. Plant Cell Physiol. 46:1073–1082.
   PubMed Web of Science ®Google Scholar
• Linder ME, Deschenes RJ. 2007. Palmitoylation: policing protein stability and traffic. Nat Rev Mol Cell Biol. 8:74–84. doi:10.1038/nrm2084
   PubMed Web of Science ®Google Scholar
• Löfke C, Luschnig C, Kleine-Vehn J. 2013. Posttranslational modification and trafficking of PIN auxin efflux carriers. Mech Dev. 130:82–94.
   PubMed Web of Science ®Google Scholar
• Ma Q-H. 2007. Characterization of a cinnamoyl-CoA reductase that is associated with stem development in wheat. J Exp Bot. 58:2011–2021.
   PubMed Web of Science ®Google Scholar
• Martín ML, Busconi L. 2001. A rice membrane-bound calcium-dependent protein kinase is activated in response to low temperature. Plant Physiol. 125:1442–1449.
   PubMed Web of Science ®Google Scholar
• Mir Derikvand M, Sierra JB, Ruel K, Pollet B, Do C-T, Thévenin J, Buffard D, Jouanin L, Lapierre C.2008. Redirection of the phenylpropanoid pathway to feruloyl malate in Arabidopsis mutants deficient for cinnamoyl-CoA reductase 1. Planta. 227:943–956. doi:10.1007/s00425-007-0669-x
   PubMed Web of Science ®Google Scholar
• Mohanta TK. 2012. Advances in Ginkg biloba research: genomics and metabolomics perpectives. African J Biotech. 11:15936–15944.
   Google Scholar
• Mohanta TK, Occhipinti A, Zebelo SA, Foti M, Fliegmann J, Bossi S, Massimo EM, Bertea CM. (2012). Ginkgo biloba responds to herbivory by activating early signaling and direct defenses. PLoS One. 7:e32822.
   Google Scholar
• Moriya K, Nagatoshi K, Noriyasu Y, Okamura T, Takamitsu E, Suzuki T, Utsumi T. 2013. Protein N-myristoylation plays a critical role in the endoplasmic reticulum morphological change induced by overexpression of protein Lunapark, an integral membrane protein of the endoplasmic reticulum. PLoS One. 8:e78235.
   Google Scholar
• Moura JCMS, Bonine CAV, de Oliveira Fernandes Viana J, Dornelas MC, Mazzafera P. 2010. Abiotic and biotic stresses and changes in the lignin content and composition in plants. J Integr Plant Biol. 52:360–376.
   PubMed Web of Science ®Google Scholar
• Pichon M, Courbou I, Beckert M, Boudet AM, Grima-Pettenati J.1998. Cloning and characterization of two maize cDNAs encoding cinnamoyl-CoA reductase (CCR) and differential expression of the corresponding genes. Plant Mol Biol. 38:671–676. doi:10.1023/A:1006060101866
   PubMed Web of Science ®Google Scholar
• Raes J, Rohde A, Christensen JH, Van de Peer Y, Boerjan W. 2003. Genome-wide characterization of the lignification toolbox in Arabidopsis. Plant Physiol. 133:1051–1071. doi:10.1104/pp.103.026484
   PubMed Web of Science ®Google Scholar
• Ren J, Wen L, Gao X, Jin C, Xue Y, Yao X. 2008. CSS-Palm 2.0: an updated software for palmitoylation sites prediction. Protein Eng Des Sel. 21:639–644.
   PubMed Web of Science ®Google Scholar
• Schmittgen TD, Livak KJ. 2008. Analyzing real-time PCR data by the comparative CT method. Nat Protoc. 3:1101–1108. doi:10.1038/nprot.2008.73
   PubMed Web of Science ®Google Scholar
• Subramaniam S. 1998. The biology workbench—a seamless database. Proteins. 32:1–2. doi:10.1002/(SICI)1097-0134(19980701)32:1<1::AID-PROT1>3.0.CO;2-Q
   PubMed Web of Science ®Google Scholar
• Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28:2731–2739. doi:10.1093/molbev/msr121
   PubMed Web of Science ®Google Scholar
• Van der Rest B, Danoun S, Boudet A-M, Rochange SF. 2006. Down-regulation of cinnamoyl-CoA reductase in tomato (Solanum lycopersicum L.) induces dramatic changes in soluble phenolic pools. J Exp Bot. 57:1399–1411. doi:10.1093/jxb/erj120
   PubMed Web of Science ®Google Scholar
• Weng J-K, Li X, Bonawitz ND, Chapple C. 2008. Emerging strategies of lignin engineering and degradation for cellulosic biofuel production. Curr Opin Biotechnol. 19:166–172.
   PubMed Web of Science ®Google Scholar
• Wilkins MR, Gasteiger E, Bairoch A, Sanchez JC, Williams KL, Appel RD, Hochstrasser DF. 1999. Protein identification and analysis tools in the ExPASy server. Methods Mol Biol. 112:531–552.
   PubMedGoogle Scholar
• Wright MH, Heal WP, Mann DJ, Tate EW. 2010. Protein myristoylation in health and disease. J Chem Biol. 3:19–35. doi:10.1007/s12154-009-0032-8
   PubMedGoogle Scholar
• Xu Z, Zhang D, Hu J, Zhou X, Ye X, Reichel KL, Stewart NR, Syrenne RD, Yang X, Gao P, et al. 2009. Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom. BMC Bioinformatics. 10(Suppl. II):S3.
   Web of Science ®Google Scholar
• Zhou R, Jackson L, Shadle G, Nakashima J, Temple S, Chen F, Dixon RA. 2010. Distinct cinnamoyl CoA reductases involved in parallel routes to lignin in Medicago truncatula. Proc Natl Acad Sci USA. 107:17803–17808. doi:10.1073/pnas.0912942107
   PubMed Web of Science ®Google Scholar