Low-temperature tolerance and transcriptome analyses during seed germination of Anabasis aphylla

References

• Bloom AJ, Zwieniecki MA, Passioura JB, Randall LB, Holbrook NM, St. Clair DA. 2004. Water relations under root chilling in a sensitive and tolerant tomato species. Plant Cell Environ. 27(8):971–979. doi:10.1111/j.1365-3040.2004.01200.x.
   Web of Science ®Google Scholar
• Divi UK, Krishna P. 2010. Overexpression of the brassinosteroid biosynthetic gene ATDWF4 in Arabidopsis seeds overcomes abscisic acid-induced inhibition of germination and increases cold tolerance in transgenic seedlings. J Plant Growth Regul. 29(4):385–393. doi:10.1007/s00344-010-9150-3.
   Web of Science ®Google Scholar
• Feng Y, Zhang ML, Zhuo L, Chen MZ. 2011. Micromorphology of Anabasis from China with reference to their ecological significance. Acta Bot Boreal Occident Sin. 31(3):462–467.
   Google Scholar
• Gao JF. 2006. Experiments guidance of phytophysiology. Beijing: Higher Education Press; p. 211–216.
   Google Scholar
• Garnett ST, Williamson G. 2010. Spatial and temporal variation in precipitation at the start of the rainy season in tropical Australia. Rangeland J. 32:215–226. doi:10.1071/RJ09083.
   Web of Science ®Google Scholar
• Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, et al. 2011. Full-length transcriptome assembly from RNA-seq data without a reference genome. Nat Biotechnol. 29(7):644–652. doi:10.1038/nbt.1883.
   PubMed Web of Science ®Google Scholar
• Gutterman Y. 1993. Seed germination of desert plants. Berlin: Springer; p. 149–163.
   Google Scholar
• Han JX, Wei Y, Yan C, An SZ. 2011. The vivipary characteristic of Anabasis elatior and its ecological adaptation. Acta Ecol Sin. 31(10):2662–2668.
   Google Scholar
• Hwang JE, Hong JK, Lim CJ, Chen H, Je J, Yang KA, Kim DY, Choi YJ, Lee SY, Lim CO. 2010. Distinct expression patterns of two Arabidopsis phytocystatin genes, AtCYS1 and AtCYS2, during development and abiotic stresses. Plant Cell Rep. 29(8):905–915. doi:10.1007/s00299-010-0876-y.
   PubMed Web of Science ®Google Scholar
• Jia Y, Zhang FS, Xiao SX, Guan ZG, Lei ZH, Qin XM, Li ZY. 2017. Component analyses of Tussilago farfara in different development stages by metabonomic and comparative transcriptomic approaches. Chin J Biochem Mol Biol. 33(6):615–623. doi:10.13865/j.cnki.cjbmb.2017.06.12.
   Google Scholar
• Li B, Dewey C. 2011. RSEM: accurate transcript quantification from RNA-seq data with or without a reference genome. BMC Bioinform. doi:10.1186/1471-2105-12-323.
   Web of Science ®Google Scholar
• Li KL, Liu T, Li YG, Shao LP, Zhang R, Song ZL, Liu HF. 2012. Seed polymorphism and germination of Salsola korshinskyi drob. J Shihezi Univ Nat Sci. 30(3):276–281. doi:10.13880/j.cnki.65-1174/n.2012.03.024.
   Google Scholar
• Li SJ, Yan C, Wei Y, Mu SY. 2014. Relationship between low-temperature germination and antioxidant enzyme systems of Anabasis elatior seeds. Arid Zone Res. 31(2):302–306. doi:10.13866/j.azr.2014.02.002.
   Google Scholar
• Liu XQ, Zhang H, Gong P, Gong WL, Wang Z. 2018. Transcriptome analysis of secondary cell wall synthesis regulation at different developmental stages in alfalfa (Medicago sativa l.). Scientia Agricul Sin. 51(11):2049–2059. doi:10.3864/j.issn.0578-1752.2018.11.003.
   Google Scholar
• Lukatkin AS. 2002. Contribution of oxidative stress to the development of cold-induced damage to leaves of chilling-sensitive plants: 2. The activity of antioxidant enzymes during plant chilling. Russ J Plant Physiol. 49(6):782–788. doi:10.1023/A:1020965629243.
   Web of Science ®Google Scholar
• Luo N, Liu T, Liu HF, Liu ZC, Tang JG. 2014. Difference of seed germination characteristics between Salsola affinis C.A. Mey and Salsola brachiata Pall. in Junggar Basin. J Shihezi Univ Nat Sci. 32(5):608–614. doi:10.13880/j.cnki.65-1174/n.2014.05.004.
   Google Scholar
• Mao X, Cai T, Olyarchuk JG, Wei L. 2005. Automated genome annotation and pathway identification using the KEGG orthology (KO) as a controlled vocabulary. Bioinformatics. 21(19):3787–3793. doi:10.2307/1592215 doi: 10.1093/bioinformatics/bti430
   PubMed Web of Science ®Google Scholar
• Nakayama K, Okawa K, Kakizaki T, Inaba T. 2008. Evaluation of the protective activities of a late embryogenesis abundant (LEA) related protein, Cor15am, during various stresses, in vitro. Biosci Biotechnol Biochem. 72(6):1642–1645. doi:10.1271/bbb.80214.
   PubMed Web of Science ®Google Scholar
• Pang T, Ye CY, Xia X, Yin W. 2013. De novo sequencing and transcriptome analysis of the desert shrub, Ammopiptanthus mongolicus, during cold acclimation using illumina/solexa. BMC Genom. 14(1):488. doi:10.1186/1471-2164-14-488.
   PubMedGoogle Scholar
• Peleg Z, Blumwald E. 2011. Hormone balance and abiotic stress tolerance in crop plants. Curr Opin Plant Biol. 14(3):290–295. doi: 10.1016/j.pbi.2011.02.001
   PubMed Web of Science ®Google Scholar
• Peng MW, Wang M, Jiang P, Chang YL, Chu GM. 2018. The impact of low temperature on seed germination of two desert species in Junggar Basin of China. Appl Ecol Environ Res. 16(5):5771–5780. doi:10.15666/aeer/1605_57715780.
   Web of Science ®Google Scholar
• Piao S, Ciais P, Huang Y, Shen Z, Peng S, Li J, Zhou L, Liu H, Ma Y, Ding Y, et al. 2010. The impacts of climate change on water resources and agriculture in China. Nature. 467(7311):43–51. doi:10.1038/nature09364.
   PubMed Web of Science ®Google Scholar
• Ren J, Yu FK, Tao L. 2011. Research advances on the germination of desert plants under stress. Bull Botan Res. 31(1):121–128.
   Google Scholar
• Shi YT, Ding YL, Yang SH. 2015. Cold signal transduction and its interplay with phytohormones during cold acclimation. Plant Cell Physiol. 56:7–15. doi:10.1093/pcp/pcu115.
   PubMed Web of Science ®Google Scholar
• Shimada TL, Tomoo S, Hideyuki T, Yoichiro F, Ikuko HN. 2008. A novel role for oleosins in freezing tolerance of oilseeds in Arabidopsis thaliana. Plant J. 55(5):798–809. doi:10.1111/j.1365-313X.2008.03553.x.
   PubMed Web of Science ®Google Scholar
• Sun W, Huang Y. 2011. Global warming over the period 1961–2008 did not increase high-temperature stress but did reduce low-temperature stress in irrigated rice across China. Agr Forest Meteorol. 151(9):1193–1201. doi:10.1016/j.agrformet.2011.04.009.
   Web of Science ®Google Scholar
• Sutton WF, Kenefick DG, Ding X. 1992. Group 3 LEA gene hva1 regulation by cold acclimation and deacclimation in two barley cultivars with varying freeze resistance. Plant Physiol. 99(1):338–340. doi:10.1104/pp.99.1.338.
   PubMed Web of Science ®Google Scholar
• Tian Y. 2014. The lethal factors and survival strategy in Haloxylon ammodendron germination and ecesis process [PhD thesis]. Xinjiang University.
   Google Scholar
• Valdés-Rodríguez S, Guerrero-Rangel A, Melgoza-Villagómez C, Chagolla-López A, Delgado-Vargas F, Martínez-Gallardo N, Sánchez-Hernández C, Délano-Frier J. 2007. Cloning of a cDNA encoding a cystatin from grain amaranth (Amaranthus hypochondriacus) showing a tissue-specific expression that is modified by germination and abiotic stress. Plant Physiol Biochem. 45(10-11):790–798. doi:10.1016/j.plaphy.2007.07.007.
   PubMed Web of Science ®Google Scholar
• Wang L, Wu N, Zhu Y, Song W, Zhao X, Li Y. 2016. The divergence and positive selection of the plant-specific BURP-containing protein family. Ecol Evol. 5(22):5394–5412. doi:10.1002/ece3.1792.
   Web of Science ®Google Scholar
• Wang TT, Ye CX, Wang M, Chu GM. 2017. Identification of cold-stress responsive proteins in Anabasis aphylla seedlings via the iTRAQ proteomics technique. Journal of Plant Interactions. 12(1):505–519. doi:10.1080/17429145.2017.1397204.
   Web of Science ®Google Scholar
• Wang Y, Zhang XM, Li L, Li HX. 2008. Seed on response of germination of four species of Salsola L. to main ecology factors. Seed. 27(8):58–63+67. doi:10.16590/j.cnki.1001-4705.2008.08.061.
   Google Scholar
• Wang XC, Zhao QY, Ma CL, Zhang ZH, Cao HL, Kong YM, Yue C, Hao XY, Chen L, Ma JQ, et al. 2013. Global transcriptome profiles of Camellia sinensis during cold acclimation. BMC Genom. 14(1):415–415. doi:10.1186/1471-2164-14-415.
   PubMedGoogle Scholar
• Wei Y, Dong M, Huang ZY. 2007. Seed polymorphism, dormancy, and germination of Salsola affinis (Chenopodiaceae), a dominant desert annual inhabiting the Junggar Basin of Xinjiang, China. Aust J Bot. 55(4):1–7. doi: 10.1071/BT06016
   Web of Science ®Google Scholar
• Yang W, Gong RG, Shi JJ, Lai J, Liao MA, Liang GL. 2014. De novo assembly and functional annotation of the loquat young fruit transcriptome under chilling stress. J Northwest A and F Univ Nat Sci Ed. 42(8):138–146. doi:10.13207/j.cnki.jnwafu.2014.08.013.
   Google Scholar
• Yang N, Zhao HP, Ge FW, Li YH, Zeng WJ, Zhao HX. 2015. Physiological response of two lepidium species to low temperature stress during seed germination. Arid Zone Res. 32(4):760–765. doi:10.13866/j.azr.2015.04.18.
   Google Scholar
• Young MD, Wakefield MJ, Smyth GK, Oshlack A. 2010. Gene ontology analysis for RNA-seq: accounting for selection bias. Genome Biol. 11(2):R14. doi:10.1186/gb-2010-11-2-r14.
   PubMed Web of Science ®Google Scholar
• Zhang JL, Fu C. 2018. Response of cysteine protease and cysteine protease inhibitor to adverse stress. Mol Plant Breed. 16(13):4453–4459. doi:10.13271/j.mpb.016.004453.
   Google Scholar
• Zhang GH, He XL. 2008. Water-absorbing and germinating characteristics of eight species from Seriphidium (Bess.) Poljak. J Hebei Univ Nat Sci Ed. 28(5):536–541. doi:10.3969/j.issn.1000-1565.2008.05.020.
   Google Scholar
• Zhang S, Jiang H, Peng S, Korpelainen H, Li C. 2011. Sex-related differences in morphological, physiological, and ultrastructural responses of Populus cathayana to chilling. J Exp Bot. 62:675–686. doi:10.1093/jxb/erq306.
   PubMed Web of Science ®Google Scholar
• Zhang Y, Xue LG, Gao TP, Jin L, An LZ. 2005. Research advance on seed germination of desert plants. J Desert Res. 25(1):108–114.
   Google Scholar
• Zhang ZA, Zhang MS, Wei RH. 2004. Experiments guidance of phytophysiology. Beijing: China Agricultural Science and Technology Press; p. 65–139.
   Google Scholar
• Zhao HX, Li Q, Zhou J, Li G. 2010. The characteristics of low temperature tolerance during seed germination of the ephemeral plant Lepidium apetalum (Cruciferae). Acta Bot Yunnan. 32(05):448–454.
   Google Scholar
• Zhao YZ, Zhu ZY, Liu ZL, Liang CZ, Wang W, Baorina, Zhang T, Pei H. 2003. Analysis of plant diversity in oasis-deserta ecotone of north Xinjiang. J Arid Land Resour Environ. 17(1):100–109. doi:10.13448/j.cnki.jalre.2003.01.021.
   Google Scholar
• Zou Q. 2000. Phytophysiology. Beijing: China Agriculture Press; p. 167–169.
   Google Scholar