Interactive effects of altitude, microclimate and shading system on coffee leaf rust

References

• Allinne C, Savary S, Avelino J. 2016. Delicate balance between pest and disease injuries, yield performance, and other ecosystem services in the complex coffee-based systems of Costa Rica. Agric Ecosyst Environ. 222:1–12. doi: 10.1016/j.agee.2016.02.001
   Web of Science ®Google Scholar
• Avelino J, Cristancho M, Georgiou S, Imbach P, Aguilar L, Bornemann G, Läderach P, Anzueto F, Hruska AJ, Morales C. 2015. The coffee rust crises in Colombia and Central America (2008–2013): impacts, plausible causes and proposed solutions. Food Secur. 7:303–321. doi: 10.1007/s12571-015-0446-9
   Web of Science ®Google Scholar
• Avelino J, Muller RA, Cilas C, Velasco Pascual H. 1991. Développement et comportement de la rouille orangée du caféier (Hemileia vastatrix Berk. et Br.) dans des plantations en cours de modernisation, plantées de variétés naines, dans le sud-est du Mexique. Café, cacao, thé. 35:21–42.
   Google Scholar
• Avelino J, Romerogurdián A, Cruz-cuellar HF, Declerck FAJ. 2012. Landscape context and scale differentially impact coffee leaf rust, coffee berry borer, and coffee root-knot nematodes. Ecol Appl. 22:584–596. doi: 10.1890/11-0869.1
   PubMed Web of Science ®Google Scholar
• Avelino J, Ten Hoopen GM, DeClerck F. 2011. Ecological mechanisms for pest and disease control in coffee and cacao agroecosystems of the neotropics. In: Rapidel B, Le Coq J, Beer J, editors. Ecosystem services from agriculture and agroforestry measurement and payment. Londres: Earthscan Publications; p. 91–117.
   Google Scholar
• Avelino J, Willocquet L, Savary S. 2004. Effects of crop management patterns on coffee rust epidemics. Plant Pathol. 53:541–547. doi: 10.1111/j.1365-3059.2004.01067.x
   Web of Science ®Google Scholar
• Avelino J, Zelaya H, Merlo A, Pineda A, Ordoñez M, Savary S. 2006. The intensity of a coffee rust epidemic is dependent on production situations. Ecol Modell. 197:431–447. doi: 10.1016/j.ecolmodel.2006.03.013
   Web of Science ®Google Scholar
• Barradas VL, Fanjul L. 1986. Microclimatic characterization of shaded and opengrown coffee (Coffea arabica L.) plantations in Mexico. Agric For Meteorol. 38:101–112. doi: 10.1016/0168-1923(86)90052-3
   Web of Science ®Google Scholar
• Beer J, Muschler R, Kass D, Somarriba E. 1998. Shade management in coffee and cacao plantations. Agrofor Syst. 38:139–164. doi: 10.1023/A:1005956528316
   Web of Science ®Google Scholar
• Bock KR. 1962. Seasonal periodicity of coffee leaf rust and factors affecting the severity of outbreaks in Kenya Colony. Trans Br Mycol Soc. 45:289–300. doi: 10.1016/S0007-1536(62)80068-0
   Google Scholar
• Boreux V, Kushalappa CG, Vaast P, Ghazoul J. 2013. Interactive effects among ecosystem services and management practices on crop production: Pollination in coffee agroforestry systems. Proc Natl Acad Sci U S A. 110:8387–8392. doi: 10.1073/pnas.1210590110
   PubMed Web of Science ®Google Scholar
• Bosselmann AS, Dons K, Oberthur T, Olsen CS, Ræbild A, Usma H. 2009. The influence of shade trees on coffee quality in small holder coffee agroforestry systems in Southern Colombia. Agric Ecosyst Environ. 129:253–260. doi: 10.1016/j.agee.2008.09.004
   Web of Science ®Google Scholar
• Boudrot A, Pico J, Merle I, et al. 2016. Shade effects on the dispersal of airborne Hemileia vastatrix Uredospores. Phytopathology. 106:572–580. doi: 10.1094/PHYTO-02-15-0058-R
   PubMed Web of Science ®Google Scholar
• Cerda R, Allinne C, Gary C, Philippe T, Harvey CA, Krolczyk L, Mathiot C, Clément E, Aubertot J-N, Avelino J. 2016. Effects of shade, altitude and management on multiple ecosystem services in coffee agroecosystems. Eur J Agron. 82:308–319. doi: 10.1016/j.eja.2016.09.019
   Web of Science ®Google Scholar
• Cerda R, Avelino J, Gary C, Tixier P, Lechevallier E, Allinne C. 2017. Primary and secondary yield Losses caused by pests and diseases: assessment and modeling in coffee. PLoS One. 12:1–17.
   Web of Science ®Google Scholar
• Dai A, Trenberth KE, Karl TR. 1999. Effects of clouds, soil moisture, precipitation, and water vapor on diurnal temperature range. J Clim. 12:2451–2473. doi: 10.1175/1520-0442(1999)012<2451:EOCSMP>2.0.CO;2
   Web of Science ®Google Scholar
• De Jong EJ, Eskes AB, Hoogstraten JGJ, Zadoks JC. 1987. Temperature requirements for germination, germ tube growth and appressorium formation of urediospores of Hemileia vastatrix. Neth J Plant Path. 93:61–71. doi: 10.1007/BF01998091
   Web of Science ®Google Scholar
• Eskes A. 1982. The use of leaf disk inoculations in assessing resistance to coffee leaf rust. Neth J Plant Path. 88:127–141. doi: 10.1007/BF01977270
   Web of Science ®Google Scholar
• Grace JB. 2006. Structural equation modeling and natural systems. Cambridge: Cambridge University Press.
   Google Scholar
• Holden ZA, Klene AE, Keefe R F, Moisen G G. 2013. Design and evaluation of an inexpensive radiation shield for monitoring surface air temperatures. Agric For Meteorol. 180:281–286. doi: 10.1016/j.agrformet.2013.06.011
   Web of Science ®Google Scholar
• Jha S, Bacon CM, Philpott SM, Rice RA, Méndez VE, Läderach P. 2011. A review of ecosystem services, farmer livelihoods, and value chains in shade coffee agroecosystems. In: Bruce Campbell W., Ortíz S López, editors. Integrating agriculture, conservation and ecotourism: examples from the field. Dordrecht: Springer Science & Business Media; p. 141–208.
   Google Scholar
• Kushalappa AC. 1982. Calculation of apparent infection rate in plant diseases: development of a method to correct for host growth. Phytopathology. 72:1373. doi: 10.1094/Phyto-72-1373
   Web of Science ®Google Scholar
• Kushalappa AC, Chaves GM. 1980. An analysis of the development of coffee rust in the field. Fitopatol Bras. 5:95–103.
   Google Scholar
• Lefcheck JS. 2016. piecewiseSEM: piecewise structural equation modelling in r for ecology, evolution, and systematics. Methods Ecol Evol. 7:573–579. doi: 10.1111/2041-210X.12512
   Web of Science ®Google Scholar
• Leguizamón J. 1983. Contribution à la connaissance de la résistance incomplète du caféier à Hemileia vastatrix Berk. et Br [PhD thesis]. Montpellier: ENSA.
   Google Scholar
• Lemmon PE. 1957. A new instrument for measuring forest overstory density. J For. 55:667–668.
   Google Scholar
• Lin BB. 2007. Agroforestry management as an adaptive strategy against potential microclimate extremes in coffee agriculture. Agric For Meteorol. 144:85–94. doi: 10.1016/j.agrformet.2006.12.009
   Web of Science ®Google Scholar
• Linacre E. 1982. The effect of altitude on the daily range of temperature. J Climatol. 2:375–382. doi: 10.1002/joc.3370020407
   Google Scholar
• López-Bravo DF, Virginio-Filho EDM, Avelino J. 2012. Shade is conducive to coffee rust as compared to full sun exposure under standardized fruit load conditions. Crop Prot. 38:21–29. doi: 10.1016/j.cropro.2012.03.011
   Web of Science ®Google Scholar
• Mani MS. 2013. Ecology and biogeography of high altitude insects. The Hague: Springer Science & Business Media.
   Google Scholar
• Matovu JR, Kangire A, Kabole C, et al. 2013. Resistance to coffee leaf rust (Hemileia vastatrix, Berk. and Broome) among Arabica coffee genotypes in Uganda. Afr Crop Sci Conf Proc. 11:221–226.
   Google Scholar
• McCook S. 2006. Global rust belt: Hemileia vastatrix and the ecological integration of world coffee production since 1850. J Global Hist. 1:177–195. doi: 10.1017/S174002280600012X
   Web of Science ®Google Scholar
• Morais H, Caramori PH, De Arruda Ribeiro AM, Gomes JC, Koguishi MS. 2006. Microclimatic characterization and productivity of coffee plants grown under shade of pigeon pea in Southern Brazil. Pesqu Agropecu Bras. 41:763–770. doi: 10.1590/S0100-204X2006000500007
   Web of Science ®Google Scholar
• Muschler RG. 2004. Shade management and its effect on coffee growth and quality. In: Wintgens J, editor. Coffee: growing, processing, sustainable production: a guidebook for growers, processors, traders, and researchers. Weinheim: Wiley-VCH; p. 391–418.
   Google Scholar
• Nutman FJ, Roberts FM, Clarke RT. 1963. Studies on the biology of Hemileia vastatrix Berk. & Br. Trans Br Mycol Soc. 46:27–44. doi: 10.1016/S0007-1536(63)80005-4
   Google Scholar
• Potter KA, Arthur Woods H, Pincebourde S. 2013. Microclimatic challenges in global change biology. Glob Change Biol. 19:2932–2939. doi: 10.1111/gcb.12257
   PubMed Web of Science ®Google Scholar
• Pumariño L, Sileshi GW, Gripenberg S, et al. 2015. Effects of agroforestry on pest, disease and weed control: A meta-analysis. Basic Appl Ecol. 16:573–582. doi: 10.1016/j.baae.2015.08.006
   Web of Science ®Google Scholar
• Rabbinge R, De Wit C. 1989. Systems, models and simulation. In: Van Laar HH, editor. Simulation and systems management in crop protection. Wageningen: Pudoc; p. 3–15.
   Google Scholar
• Rahn E, Liebig T, Ghazoul J, van Asten P, Läderach P, Vaast P, Sarmiento A, Garcia C, Jassogne L. 2018. Opportunities for sustainable intensification of coffee agro-ecosystems along an altitudinal gradient on Mt. Elgon, Uganda. Agric Ecosyst Environ. 263:31–40. doi: 10.1016/j.agee.2018.04.019
   Web of Science ®Google Scholar
• Rayner RW. 1961. Germination and penetration studies on coffee rust (Hemileia vastatrix B. & Br.). Ann Appl Biol. 49:497–505. doi: 10.1111/j.1744-7348.1961.tb03641.x
   Web of Science ®Google Scholar
• Rowlandson T, Gleason M, Sentelhas P, Gillespie T, Thomas C, Hornbuckle B. 2015. Reconsidering leaf wetness duration determination for plant disease management. Plant Dis. 99:310–319. doi: 10.1094/PDIS-05-14-0529-FE
   PubMed Web of Science ®Google Scholar
• Savary S, McRoberts N, Esker PD, Willocquet L, Teng PS. 2017. Production situations as drivers of crop health: evidence and implications. Plant Pathol. 66(6):867–876. doi: 10.1111/ppa.12659
   Web of Science ®Google Scholar
• Shipley B. 2000. A new inferential test for path models based on directed acyclic graphs. Struct Equ Model. 7:206–218. doi: 10.1207/S15328007SEM0702_4
   Web of Science ®Google Scholar
• Shuttleworth WJ. 2012. Surface energy fluxes. In: Terrestrial hydrometeorology. Chichester: Wiley; p. 36–47.
   Google Scholar
• Silva-Acuña R, Zambolim L. 1999. Incidence-severity relationships in the pathosystem Coffea arabica-Hemileia vastatrix. Plant Dis. 83:186–188. doi: 10.1094/PDIS.1999.83.2.186
   PubMed Web of Science ®Google Scholar
• Staver C, Guharay F, Monterroso D, Muschler RG. 2001. Designing pest-suppressive multistrata perennial crop systems: shade-grown coffee in Central America. Agrofor Syst. 53:151–170. doi: 10.1023/A:1013372403359
   Web of Science ®Google Scholar
• Stigter KCJ. 2015. Agroforestry and (micro) climate change. In: Ong CK, editor. Tree-crop interactions: agroforestry in a changing climate. Wallingford: CABI; p. 119–145. University of Nottingham, Malaysia.
   Google Scholar
• Teodoro AV, Sousa-Souto L, Klein A-M, Tscharntke T. 2010. Seasonal contrasts in the response of coffee ants to agroforestry shade-tree management. Environ Entomol. 39:1744–1750. doi: 10.1603/EN10092
   PubMed Web of Science ®Google Scholar
• Vaast P, Bertrand B, Perriot J-J, Guyot B, Génard M. 2006. Fruit thinning and shade improve bean characteristics and beverage quality of coffee (Coffea arabica L.) under optimal conditions. J Sci Food Agric. 86:197–204. doi: 10.1002/jsfa.2338
   Web of Science ®Google Scholar
• Wagenet RJ. 1998. Scale issues in agroecological research chains. Nutr Cycl Agroecosyst. 50:23–34. doi: 10.1023/A:1009770312707
   Web of Science ®Google Scholar
• Waller JM. 1982. Coffee rust-epidemiology and control. Crop Prot. 1:385–404. doi: 10.1016/0261-2194(82)90022-9
   Google Scholar
• Xiao H, Meissner R, Seeger J, Rupp H, Borg H, Zhang Y. 2013. Analysis of the effect of meteorological factors on dewfall. Sci Total Environ. 452–453:384–393. doi: 10.1016/j.scitotenv.2013.03.007
   PubMed Web of Science ®Google Scholar