OsMATE6 gene putatively involved in host defense response toward susceptibility against Rhizoctonia solani in rice

References

• Aggarwal S, Neelam K, Jain J, Kaur R, Pannu P, Lenka S, Lore JS, Singh K. 2019. Identification of promising resistance sources against sheath blight from the annual wild species of rice Oryza nivara (Sharma et Shastry). Plant Genet Resour Charact Util. 17(6):554–558. doi:10.1017/S1479262119000315.
   Google Scholar
• Anderson JP, Hane JK, Stoll T, Pain N, Hastie ML, Kaur P, Hoogland C, Gorman JJ, Singh KB. 2016. Proteomic analysis of Rhizoctonia solani identifies infection-specific, redox associated proteins and insight into adaptation to different plant hosts. Mol Cell Proteom. 15(4):1188–1203.
   PubMed Web of Science ®Google Scholar
• Borthakur BK, Addy SK. 1988. Anastomosis grouping in isolates of Rhizoctonia solani causing rice sheath blight disease. Indian Phytopath. 41:351–354.
   Google Scholar
• Carling DE, Pope EJ, Brainard KA, Carter DA. 1999. Characterization of mycorrhizal isolates of Rhizoctonia solani from an orchid, including AG-12, a new anastomosis group. Phyto Pathol. 89:942–946.
   PubMed Web of Science ®Google Scholar
• Channamallikarjuna V, Sonah H, Prasad M, Rao GJN, Chand S, Upreti HC, Singh NK, Sharma TR. 2010. Identification of major quantitative trait loci qSBR11-1 for sheath blight resistance in rice. Mol Breed. 25:155–166.
   Web of Science ®Google Scholar
• Das N, Bhattacharya S, Bhattacharyya S, Maiti MK. 2018. Expression of rice MATE family transporter OsMATE2 modulates arsenic accumulation in tobacco and rice. Plant Mol Biol. 98:101–120.
   PubMed Web of Science ®Google Scholar
• Fernandez F, Wright JD, Hartline D, Quispe CF, Madayiputhiya N, Wilson R, Hynes M. 2012. Principles of carbon catabolite repression in the rice blast fungus: Tps1, Nmr1-3, and a MATE-family pump regulate glucose metabolism during infection. PLoS Genet. 8:e1002673.
   PubMed Web of Science ®Google Scholar
• Freeman BC, Beattie GA. 2008. An overview of plant defenses against pathogens and herbivores. In: Plant Pathology and Microbiology Publications; p. 94; https://lib.dr.iastate.edu/plantpath_pubs/94.
   Google Scholar
• Ghosh S, Kanwar P, Jha G. 2017. Alternations in rice chloroplast integrity, photosynthesis and metabolome associated with pathogenesis of Rhizoctonia solani. Sci Rep. doi:10.1038/srep41610.
   Web of Science ®Google Scholar
• Guillemaut C, Hermann VE, Camporota P, Alabouvette C, Morald MR, Steinberg C. 2003. Typing of anastomosis groups of Rhizoctonia solani by restriction analysis of ribosomal DNA. Can J Microbiol. 49(9):556–568.
   PubMed Web of Science ®Google Scholar
• Gururani MA, Venkatesh J, Upadhyaya CP, Nookaraju A, Pandey SK, Park SW. 2012. Plant disease resistance genes: current status and future directions. Physiol Mol Plant Pathol. 78:51–65.
   Web of Science ®Google Scholar
• Huang Y, He G, Tian W, Li D, Meng L, Wu D, He T. 2021. Genome-wide identification of MATE gene family in potato (Solanum tuberosum L.) and expression analysis in heavy metal stress. Front Genet. 12:650500.
   PubMedGoogle Scholar
• Jia L, Yan W, Zhu C, Agrama HA, Jackson A, Yeater K, Li X, Huang B, Hu B, McClung A. 2012. Allelic analysis of sheath blight resistance with association mapping in rice. PLoS One. 7:e32703.
   PubMed Web of Science ®Google Scholar
• Juliao MH, Silva SR, Ferro JA, Varani AM. 2020. A genomic and transcriptomic overview of MATE, ABC, and MFS transporters in Citrus sinensis interaction with xanthomonas citri subsp. citri. Plants. 9(6):794.
   Google Scholar
• Karmakar S, Datta K, Molla KA, Gayen D, Das K, Sarkar SN, Datta SK. 2019. Proteo-metabolomic investigation of transgenic rice unravels metabolic alterations and accumulation of novel proteins potentially involved in defence against Rhizoctonia solani. Sci Rep. 9:10461.
   PubMed Web of Science ®Google Scholar
• Khush GS. 2005. What it will take to feed 5.0 billion rice consumers in 2030. Plant Mol Bol. 59:1–6.
   PubMed Web of Science ®Google Scholar
• Kumar G, Kumar P, Kapoor R, Lore JS, Bhatia D, Kumar A. 2021a. Characterization of evolutionarily distinct rice BAHD-acyltransferases provides insight into their plausible role in rice susceptibility to Rhizoctonia solani. Plant Genome. 14:e20140.
   PubMed Web of Science ®Google Scholar
• Kumar P, Parveen A, Sharma H, Rahim MS, Mishra A, Kumar P, Shah K, Rishi V, Roy J. 2021b. Understanding the regulatory relationship of abscisic acid and bZIP transcription factors towards amylose biosynthesis in wheat. Mol Biol Rep. 48(3):2473–2483.
   PubMed Web of Science ®Google Scholar
• Law CJ, Maloney PC, Wang DN. 2008. Ins and outs of major facilitator superfamily antiporters. Annu Rev Microbiol. 62:289–305.
   PubMed Web of Science ®Google Scholar
• Liu G, Jia Y, Correa-Victoria FJ, Prado G, Yeater K, McClung A, Correll J. 2009. Mapping quantitative trait loci responsible for resistance to sheath blight in rice. Phytopathology. 99:1078–1084.
   PubMed Web of Science ®Google Scholar
• Liu J, Li Y, Wang W, Gai J, Li Y. 2016. Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean. BMC Genom. 17(1):1–15.
   PubMedGoogle Scholar
• Liu L, Chen T, Wang Z, Zhang H, Yang J, Zhang B. 2013. Combination of site-specific nitrogen management and alternate wetting and drying irrigation increases grain yield and nitrogen and water use efficiency in super rice. Field Crop Res. 154:226–235.
   Web of Science ®Google Scholar
• Livak JK, Schmittgen TD. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2-CT method. Method. 25:402–408.
   PubMed Web of Science ®Google Scholar
• Lore JS, Hunjan MS, Singh P, Willocquet L, Sri S, Savary S. 2013. Phenotyping of partial physiological resistance to rice sheath blight. J Phytopathol. 161:224–229.
   Web of Science ®Google Scholar
• Lu M, Radchenko M, Symersky J, Nie R, Guo Y. 2013. Structural insights into H+-coupled multidrug extrusion by a MATE transporter. Nat Struct Mol Biol. 20(11):1310–1317.
   PubMed Web of Science ®Google Scholar
• Mackon E, Ma Y, JeazetDonghoEpseMackon GC, Usman B, Zhao Y, Li Q, Liu P. 2021. Computational and transcriptomic analysis unraveled OsMATE34 as a putative anthocyanin transporter in black rice (Oryza sativa L.) caryopsis. Genes. 12(4):583.
   PubMed Web of Science ®Google Scholar
• Magalhaes JV, Liu J, Gurimaraes CT, Lana UGP, Alves VMC, Wang YH, Schaffert RE, Hoekenga OA, Piñeros MA, Shaff JE, et al. 2007. A gene in the multidrug and toxic compound extrusion (MATE) family confers aluminum tolerance in sorghum. Nat Genet. 39:1156–1161.
   PubMed Web of Science ®Google Scholar
• Marshall DS, Rush MC. 1980. Relationship between infection by Rhizoctonia solani and R. oryzae and disease severity in rice. Phytopathology. 70:941–946.
   Web of Science ®Google Scholar
• Molla KA, Karmakar S, Molla J, Bajaj P, Varshney RK, Datta SK, Datta K. 2020. Understanding sheath blight resistance in rice: the road behind and the road ahead. Plant Biotechnol J. 18:895–915.
   PubMed Web of Science ®Google Scholar
• Nimmy MS, Kumar V, Singh AK, Jain PK, Srinivasan R. 2015. Expression analysis of a MATE-type transporter gene of Arabidopsis and its orthologues in rice and chickpea under salt stress. Indian J Genet. 75(4):478–485.
   Web of Science ®Google Scholar
• Norton GJ, Lou-Hing DE, Meharg AA, Price AH. 2008. Rice–arsenate interactions in hydroponics: whole genome transcriptional analysis. J Exp Bot. 59(8):2267–2222.
   PubMed Web of Science ®Google Scholar
• Qiao C, Yang J, Wan Y, Xiang S, Guan M, Du H, Tang Z, Lu K, Li J, Qu C. 2020. A genome-wide survey of MATE transporters in Brassicaceae and unveiling their expression profiles under abiotic stress in rapeseed. Plants. 9(9):1072.
   Google Scholar
• Richa K, Tiwari IM, Kumari M, Devanna BN, Sonah H, Kumari A, Nagar R, Sharma V, Botella JR, Sharma TR. 2016. Functional characterization of novel chitinase genes present in the sheath blight resistance QTL: qSBR11-1 in rice line Tetep. Plant Sci. 7:244.
   Web of Science ®Google Scholar
• Ryan PR, Raman H, Gupta S, Horst WJ, Delhaize E. 2009. A second mechanism for aluminium resistance in wheat relies on the constitutive efflux of citrate from roots. Plant Physiol. 149:340–351.
   PubMed Web of Science ®Google Scholar
• Santos DAL, Chaves-Silva S, Yang L, Maia LGS, Chalfun-Junior A, Sinharoy S, Benedito VA. 2017. Global analysis of the MATE gene family of metabolite transporters in tomato. BMC Plant Biol. 17(1):1–13.
   PubMedGoogle Scholar
• Shitan N, Kato K, Shoji T. 2014. Alkaloid transporters in plants. Plant Biotechnol J. 31:453–463.
   Google Scholar
• Singh A, Singh VK, Singh S, Pandian R, Ellur RK, Singh D, Bhowmick PK, et al. 2012. Molecular breeding for the development of multiple disease resistance in Basmati rice. AoB Plants. pls029. doi:10.1093/aobpla/pls029.
   PubMed Web of Science ®Google Scholar
• Singh P, Mazumdar P, Harikrishna JA, Babu S. 2019. Sheath blight of rice: a review and identification of priorities for future research. Planta. 250:1387–1407.
   PubMed Web of Science ®Google Scholar
• Singh R, Sundar S, Kumar P. 2016. Sheath blight of rice: current status and perspectives. Indian Phytopathol. 69(4):340–351.
   Google Scholar
• Singh R, Verma S, Mohanpuria P, Yadav IS, Sarao NK. 2021. Comprehensive characterization of Allium cepa leaf lectin (ACAL1) for its potential use against sap-sucking plant pests: in silico study. J Protein Proteom. 12(3):185–199.
   Google Scholar
• Takanashi K, Shitan N, Yazaki K. 2014. The multidrug and toxic compound extrusion (MATE) family in plants. Plant Biotechnol. 31:417–430.
   Web of Science ®Google Scholar
• Tanaka Y, Hipolito CJ, Maturana AD, Ito K, Kuroda T, Higuchi T, Katoh T HE, Hattori M, Kumazaki K, et al. 2013. Structural basis for the drug extrusion mechanism by a MATE multidrug transporter. Nature. 496:247–251.
   PubMed Web of Science ®Google Scholar
• Tiwari M, Sharma D, Singh M, Tripathi RD, Trivedi PK. 2014. Expression of OsMATE1 and OsMATE2 alters development, stress responses and pathogen susceptibility in Arabidopsis. Sci Rep. 4(1):1–12.
   Google Scholar
• Wang A, Shu X, Jing X, Jiao C, Chen L, Zhang J, Li M, Jiang Y, Yamamoto N, Li S, et al. 2021. Identification of rice (Oryza sativa L.) genes involved in sheath blight resistance via a genome-wide association study. Plant Biotechnol J. 19(8):1553–1566.
   PubMed Web of Science ®Google Scholar
• Wang L, Bei X, Gao J, Li Y, Yan Y, Hu Y. 2016. The similar and different evolutionary trends of MATE family occurred between rice and Arabidopsis thaliana. BMC Plant Biol. 16(1):1–19.
   PubMedGoogle Scholar
• Wang Y, Pinson S, Fjellstrom R, Tabien R. 2012. Phenotypic gain from introgression of two QTL, qSB9-2 and qSB12-1, for rice sheath blight resistance. Mol Breed. 30:293–303.
   Web of Science ®Google Scholar
• Xu L, Shen ZL, Chen W, Si GY, Meng Y, Guo N, Sun X, Cai Y-P, Lin Y, Gao JS. 2019. Phylogenetic analysis of upland cotton MATE gene family reveals a conserved subfamily involved in transport of proanthocyanidins. Mol Biol Rep. 46(1):161–175.
   PubMed Web of Science ®Google Scholar
• Yadav S, Anuradha G, Kumar RR, Vemireddy LR, Sudhakar R, Donempudi K, Venkata D, Jabeen F, Narasimhan YK, Marathi B, Siddiq EA. 2015. Identification of QTLs and possible candidate genes conferring sheath blight resistance in rice (Oryza sativa L). SpringerPlus. 4:175.
   PubMedGoogle Scholar
• Yamanaka S, Nakamura I, Nakai H, Sato YI. 2003. Dual origin of the cultivated rice based on molecular markers of newly collected annual and perennial strains of wild rice species, Oryza nivara and O. rufipogon. Genet Resour Crop Evol. 50(5):529–538.
   Web of Science ®Google Scholar
• Yokosho K, Yamaji N, Ma JF. 2011. An Al-inducible MATE gene is involved in external detoxification of AL in rice. Plant J. 68:1061–1069.
   PubMed Web of Science ®Google Scholar
• Zeng Y, Xia L, Wen Z, Ji Z, Zeng D, Qian Q, Yang C. 2015. Mapping resistant QTLs for rice sheath blight disease with a doubled haploid population. J Integr Agric. 14:801–810.
   Web of Science ®Google Scholar
• Zhang J, Chen L, Fu C, Wang L, Liu H, Cheng Y, Li S, Deng Q, Wang S, Zhu J, et al. 2017. Comparative transcriptome analyses of gene expression changes triggered by Rhizoctonia solani AG1 IA infection in resistant and susceptible rice varieties. Front. Plant Sci. 8:1422.
   PubMed Web of Science ®Google Scholar
• Zhang W, Liao L, Xu J, Han Y, Li L. 2021. Genome-wide identification, characterization and expression analysis of MATE family genes in apple (Malus× domestica Borkh). BMC Genom. 22(1):1–14.
   PubMed Web of Science ®Google Scholar
• Zheng A, Lin R, Zhang D, Qin P, Xu L, Ai P, Ding L, Wang Y, Chen Y, Liu Y, et al. 2013. The evolution and pathogenic mechanisms of the rice sheath blight pathogen. Nat Commun. 4:1–10.
   Web of Science ®Google Scholar
• Zhu H, Wu J, Jiang Y, Jin J, Zhou W, Wang Y, Han G, Zhao Y, Cheng B. 2016. Genome wide analysis of MATE-type gene family in maize reveals microsynteny and their expression patterns under aluminum treatment. J Genet. 95(3):691–704.
   PubMed Web of Science ®Google Scholar
• Zuo J, Pan X, Chen Z, Xu J, Lu J, Zhai W, Zhu L. 2000. Mapping quantitative trait loci controlling sheath blight resistance in two rice cultivars (Oryza sativa L). Theor Appl Genet. 101:569–573.
   Web of Science ®Google Scholar
• Zuo S, Yin Y, Pan C, Chen Z, Zhang Y, Gu S, Zhu L, et al. 2013. Fine mapping of qSB-11 LE, the QTL that confers partial resistance to rice sheath blight. Theor Appl Genet. 126:1257–1272.
   PubMedGoogle Scholar
• Zuo S, Zhang Y, Yin Y, Li G, Zhang G, Wang H, Chen Z, Pan X. 2014a. Fine-mapping of qSB-9 TQ, a gene conferring major quantitative resistance to rice sheath blight. Mol Breed. 34:2191–2203.
   Web of Science ®Google Scholar
• Zuo S, Zhu Y, Yin Y, Wang H, Zhang Y, Chen Z, Gu S, Pan XB. 2014b. Comparison and confirmation of quantitative trait loci conferring partial resistance to rice sheath blight on chromosome 9. Plant Dis. 98:957–964.
   PubMed Web of Science ®Google Scholar