Transcriptome analyses revealed chilling response genes in mango (Mangifera indica L. cv. Keitt) leaf

References

• Abdelaal KA, EL-Maghraby LM, Elansary H, Hafez YM, Ibrahim EI, El-Banna M, El-Esawi M, Elkelish AJA. 2020. Treatment of sweet pepper with stress tolerance-inducing compounds alleviates salinity stress oxidative damage by mediating the physio-biochemical activities and antioxidant systems. Agronomy. 10:26.
   Google Scholar
• Bari R, Jones J. 2009. Role of plant hormones in plant defence responses. Plant Mol Biol. 69:473–488.
   PubMed Web of Science ®Google Scholar
• Bezvoda R. 2014. Function of phospholipases D and lipid phosphate phosphatases in the regulation of plant cell morphogenesis. Phys Rev Lett.
   Google Scholar
• Cardoso Filho JA, Sobrinho RR, Pascholati SF. 2017. Arbuscular mycorrhizal symbiosis and its role in plant nutrition in sustainable agriculture, Agriculturally important microbes for sustainable agriculture. Springer, pp. 129-164.
   Google Scholar
• Chaudhry S, Sidhu GPS. 2021. Climate change regulated abiotic stress mechanisms in plants: a comprehensive review. Plant Cell Rep. 41:1–31.
   PubMed Web of Science ®Google Scholar
• Chen L, Song Y, Li S, Zhang L, Zou C, Yu DJBeBA-GRM. 2012. The role of WRKY transcription factors in plant abiotic stresses. Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms. 1819:120–128.
   PubMed Web of Science ®Google Scholar
• Chen W, Li P, Chen TJP, Cell E. 2000. Glycinebetaine increases chilling tolerance and reduces chilling-induced lipid peroxidation in Zea mays L. Plant Cell Environ. 23:609–618.
   Web of Science ®Google Scholar
• Dautt-Castro M, Ochoa-Leyva A, Contreras-Vergara CA, Pacheco-Sanchez MA, Casas-Flores S, Sanchez-Flores A, Kuhn DN, Islas-Osuna M. 2015. Mango (Mangifera indica L.) cv. Kent fruit mesocarp de novo transcriptome assembly identifies gene families important for ripening. Front Plant Sci. 6:62.
   PubMed Web of Science ®Google Scholar
• Deng X, Wang J, Li Y, Wu S, Yang S, Chao J, Chen Y, Zhang S, Shi M, Tian WJSr. 2018. Comparative transcriptome analysis reveals phytohormone signalings, heat shock module and ROS scavenger mediate the cold-tolerance of rubber tree. Sci Rep. 8:1–16.
   PubMed Web of Science ®Google Scholar
• Di F, Jian H, Wang T, Chen X, Ding Y, Du H, Lu K, Li J, Liu LJG. 2018. Genome-wide analysis of the PYL gene family and identification of PYL genes that respond to abiotic stress in Brassica napus. Genes (Basel). 9:156.
   PubMed Web of Science ®Google Scholar
• Dinesh M, Reddy BJTFTS, Change C. 2012. Physiological basis of growth and fruit yield characteristics of tropical and sub-tropical fruits to temperature. In: Tropical Fruit Tree Species and Climate Change.45.
   Google Scholar
• Ding Y, Shi Y, Yang SJNP. 2019. Advances and challenges in uncovering cold tolerance regulatory mechanisms in plants. New Phytol. 222:1690–1704.
   PubMed Web of Science ®Google Scholar
• Divi UK, Rahman T, Krishna P. 2010. Brassinosteroid-mediated stress tolerance in Arabidopsis shows interactions with abscisic acid, ethylene and salicylic acid pathways. BMC Plant Biol. 10:1–14.
   PubMed Web of Science ®Google Scholar
• Ernst J, Bar-Joseph Z. 2006. STEM: a tool for the analysis of short time series gene expression data. BMC Bioinformatics. 7:1–11.
   PubMed Web of Science ®Google Scholar
• Gao Z, Meng C, Zhang X, Xu D, Zhao Y, Wang Y, Lv H, Yang L, Chen L, Ye NJPO. 2012. Differential expression of carotenogenic genes, associated changes on astaxanthin production and photosynthesis features induced by JA in H. pluvialis. Plos One. 7:e42243.
   PubMed Web of Science ®Google Scholar
• Giné-Bordonaba J, Busatto N, Larrigaudière C, Lindo-García V, Echeverria G, Vrhovsek U, Farneti B, Biasioli F, De Quattro C, Rossato M. 2020. Investigation of the transcriptomic and metabolic changes associated with superficial scald physiology impaired by lovastatin and 1-methylcyclopropene in pear fruit (cv.“Blanquilla”). Hortic Res. 7:1–17.
   PubMed Web of Science ®Google Scholar
• Jagarlamudi S, Rosaiah G, Kurapati RK, Pinnamaneni RJB. 2011. Molecular identification of mango, mangifera indica L. var. totupura. Bioinformation. 5:405.
   PubMedGoogle Scholar
• Kim H, Lee K, Hwang H, Bhatnagar N, Kim D-Y, Yoon IS, Byun M-O, Kim ST, Jung K-H, Kim B-G. 2014. Overexpression of PYL5 in rice enhances drought tolerance, inhibits growth, and modulates gene expression. J Exp Bot. 65:453–464.
   PubMed Web of Science ®Google Scholar
• Kiran A, Kumar S, Nayyar H, Sharma KDJP, cell, environment 2019. Low temperature-induced aberrations in male and female reproductive organ development cause flower abortion in chickpea. Plant Cell Environ. 42:2075–2089.
   PubMed Web of Science ®Google Scholar
• Li J, Besseau S, Törönen P, Sipari N, Kollist H, Holm L, Palva ETJNP. 2013. Defense-related transcription factors WRKY 70 and WRKY 54 modulate osmotic stress tolerance by regulating stomatal aperture in Arabidopsis. New Phytol. 200:457–472.
   PubMed Web of Science ®Google Scholar
• Li L, Ma X-W, Zhan R-L, Wu H-X, Yao Q-S, Xu W-T, Luo C, Zhou Y-G, Liang Q-Z, Wang S-B. 2017. Profiling of volatile fragrant components in a mini-core collection of mango germplasms from seven countries. Plos One. 12:e0187487.
   PubMed Web of Science ®Google Scholar
• Li X, Jia J, Zhao P, Guo X, Chen S, Qi D, Cheng L, Liu GJBPB. 2020. LcMYB4, an unknown function transcription factor gene from sheepgrass, as a positive regulator of chilling and freezing tolerance in transgenic Arabidopsis. BMC Plant Biol. 20:1–15.
   PubMed Web of Science ®Google Scholar
• Liu L, Guo G, Wang Z, Ji H, Mu F, Li X. 2014. Auxin in plant growth and stress responses, Phytohormones: A window to metabolism, signaling and biotechnological applications. Springer, pp. 1–35.
   Google Scholar
• López-Martínez LM, Santacruz-Ortega H, Navarro R-E, Sotelo-Mundo RR, González-Aguilar GA. 2015. A 1H NMR investigation of the interaction between phenolic acids found in mango (Manguifera indica cv Ataulfo) and papaya (Carica papaya cv Maradol) and 1, 1-diphenyl-2-picrylhydrazyl (DPPH) free radicals. Plos one. 10:e0140242.
   PubMed Web of Science ®Google Scholar
• Luo F, Cai J-H, Kong X-M, Zhou Q, Zhou X, Zhao Y-B, Ji S-J. 2019. Transcriptome profiling reveals the roles of pigment mechanisms in postharvest broccoli yellowing. Hortic Res. 6:1–14.
   PubMed Web of Science ®Google Scholar
• Luo W, Li Y, Sun Y, Lu L, Zhao Z, Zhou J, Li XJSH. 2021. Comparative RNA-seq analysis reveals candidate genes associated with fruit set in pumpkin. Sci Hortic. 288:110255.
   Web of Science ®Google Scholar
• Mahato AK, Sharma N, Singh A, Srivastav M, Singh SK, Singh AK, Sharma TR, Singh NK. 2016. Leaf transcriptome sequencing for identifying genic-SSR markers and SNP heterozygosity in crossbred mango variety ‘Amrapali’ (Mangifera indica L.). Plos one. 11:e0164325.
   PubMed Web of Science ®Google Scholar
• Martínez MT, San-José M, Arrillaga I, Cano V, Morcillo M, Cernadas MJ, Corredoira E. 2019. Holm oak somatic embryogenesis: current status and future perspectives. Front Plant Sci. 10:239.
   PubMed Web of Science ®Google Scholar
• Meier S, Tzfadia O, Vallabhaneni R, Gehring C, Wurtzel ETJBSB. 2011. A transcriptional analysis of carotenoid, chlorophyll and plastidial isoprenoid biosynthesis genes during development and osmotic stress responses in Arabidopsis thaliana. BMC Syst Biol. 5:1–19.
   PubMed Web of Science ®Google Scholar
• Müller M, Munné-Bosch S. 2015. Ethylene response factors: a key regulatory hub in hormone and stress signaling. Plant Physiol. 169:32–41.
   PubMed Web of Science ®Google Scholar
• Nordey T, Léchaudel M, Saudreau M, Joas J, Génard M. 2014. Model-assisted analysis of spatial and temporal variations in fruit temperature and transpiration highlighting the role of fruit development. Plos One. 9:e92532.
   PubMed Web of Science ®Google Scholar
• Robinson SA, Wasley J, Tobin AKJGCB. 2003. Living on the edge–plants and global change in continental and maritime Antarctica. Glb Chg Bio. 9:1681–1717.
   Web of Science ®Google Scholar
• Rodríguez VM, Velasco P, Garrido JL, Revilla P, Ordás A, Butrón A. 2013. Genetic regulation of cold-induced albinism in the maize inbred line A661. J Exp Bot. 64:3657–3667.
   PubMed Web of Science ®Google Scholar
• Saibo NJ, Lourenço T, Oliveira M. 2009. Transcription factors and regulation of photosynthetic and related metabolism under environmental stresses. Ann Bot. 103:609–623.
   PubMed Web of Science ®Google Scholar
• Sakuma Y, Liu Q, Dubouzet JG, Abe H, Shinozaki K, Yamaguchi-Shinozaki KJB, communications b. 2002. DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration-and cold-inducible gene expression. Biochem Biophys Res Commun. 290:998–1009.
   PubMed Web of Science ®Google Scholar
• Shinozaki K, Yamaguchi-Shinozaki K. 2000. Molecular responses to dehydration and low temperature: differences and cross-talk between two stress signaling pathways. Curr Opin Plant Biol. 3:217–223.
   PubMed Web of Science ®Google Scholar
• Solovchenko A, Neverov K. 2017. Carotenogenic response in photosynthetic organisms: a colorful story. Photosynth Res. 133:31–47.
   PubMed Web of Science ®Google Scholar
• Tsai W-A, Weng S-H, Chen M-C, Lin J-S, Tsai W-S. 2019. Priming of plant resistance to heat stress and tomato yellow leaf curl Thailand virus with plant-derived materials. Front Plant Sci. 10:906.
   PubMed Web of Science ®Google Scholar
• Verma RK, Santosh Kumar VV, Yadav SK, Pushkar S, Rao MV, Chinnusamy V. 2019. Overexpression of ABA receptor PYL10 gene confers drought and cold tolerance to indica rice. Front Plant Sci. 10:1488.
   PubMed Web of Science ®Google Scholar
• Wang L, Chen W, Wang Q, Eneji A, Li Z, Duan L, Science C. 2009. Coronatine enhances chilling tolerance in cucumber (Cucumis sativus L.) seedlings by improving the antioxidative defence system. J Agron Crop Sci. 195:377–383.
   Web of Science ®Google Scholar
• Wang M-q, Huang Q-x, Lin P, Zeng Q-h, Li Y, Liu Q, Zhang L, Pan Y, Jiang B, Zhang F. 2020. The overexpression of a transcription factor gene VbWRKY32 enhances the cold tolerance in Verbena bonariensis. Front Plant Sci. 10:1746.
   PubMed Web of Science ®Google Scholar
• Wei J, Liu G, Liu D, Chen Y. 2017. Influence of irrigation during the growth stage on yield and quality in mango (Mangifera indica L). Plos one. 12:e0174498.
   PubMed Web of Science ®Google Scholar
• Wojcikowska B, Gaj MD, Bionanotechnology, 2013. High activity of auxin response factors (ARF5, ARF6, ARF10 and ARF16) in somatic embryogenesis of Arabidopsis. J Biotechnol Comput Biol Bionanotechnol. 94(3).
   Google Scholar
• Wongkaew M, Sangta J, Chansakaow S, Jantanasakulwong K, Rachtanapun P, Sommano SR. 2021. Volatile profiles from over-ripe purée of Thai mango varieties and their physiochemical properties during heat processing. Plos one. 16:e0248657.
   PubMed Web of Science ®Google Scholar
• Xie X, He Z, Chen N, Tang Z, Wang Q, Cai Y. 2019. The roles of environmental factors in regulation of oxidative stress in plant. BioMed Res Int. 2019:11. Article ID 9732325.
   Web of Science ®Google Scholar
• Xu S-C, Li Y-P, Jin H, Guan Y-J, Zheng Y-y, Zhu S-j. 2010. Responses of antioxidant enzymes to chilling stress in tobacco seedlings. BioMed Res Int. 9:1594–1601.
   Google Scholar
• Xu Y, Harvey PJJA. 2019. Carotenoid production by Dunaliella salina under red light. Antioxidants. 8:123.
   Web of Science ®Google Scholar
• Yu D, Chen C, Chen ZJTPC. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527–1540.
   PubMed Web of Science ®Google Scholar
• Zhang C-Y, Liu H-C, Zhang X-S, Guo Q-X, Bian S-M, Wang J-Y, Zhai L-LJG. 2020. VcMYB4a, an R2R3-MYB transcription factor from Vaccinium corymbosum, negatively regulates salt, drought, and temperature stress. Gene. 757:144935.
   PubMed Web of Science ®Google Scholar
• Zhang L, Zhao T, Sun X, Wang Y, Du C, Zhu Z, Gichuki DK, Wang Q, Li S, Xin H. 2019a. Overexpression of VaWRKY12, a transcription factor from Vitis amurensis with increased nuclear localization under low temperature, enhances cold tolerance of plants. Plant Mol Biol. 100:95–110.
   PubMed Web of Science ®Google Scholar
• Zhang Y, Zhang Y, Lin Y, Luo Y, Wang X, Chen Q, Sun B, Wang Y, Li M, Tang H. 2019b. A transcriptomic analysis reveals diverse regulatory networks that respond to cold stress in strawberry (Fragaria× ananassa). Int J Genomics. 2019:13. Article ID 7106092.
   Web of Science ®Google Scholar
• Zhao M, Liu Q, Zhang Y, Yang N, Wu G, Li Q, Wang W. 2020. Alleviation of osmotic stress by H2S is related to regulated PLDα1 and suppressed ROS in Arabidopsis thaliana. J Plant Res. 133:393–407.
   PubMed Web of Science ®Google Scholar
• Zhao Q, Xiang X, Liu D, Yang A, Wang Y. 2018. Tobacco transcription factor NtbHLH123 confers tolerance to cold stress by regulating the NtCBF pathway and reactive oxygen species homeostasis. Front Plant Sci. 9:381.
   PubMed Web of Science ®Google Scholar
• Zheng C, Wang Y, Ding Z, Zhao L. 2016. Global transcriptional analysis reveals the complex relationship between tea quality, leaf senescence and the responses to cold-drought combined stress in Camellia sinensis. Front Plant Sci. 7:1858.
   PubMed Web of Science ®Google Scholar