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Research Article

CRISPR-cas system in the acquisition of virulence genes in dental-root canal and hospital-acquired isolates of Enterococcus faecalis

, , , , , , , & ORCID Icon show all
Pages 1257-1267 | Received 06 Jun 2020, Accepted 08 Aug 2020, Published online: 15 Sep 2020

References

  • Tannock GW, Cook G. Enterococci as members of the intestinal microflora of humans. In: Gilmore MS, Clewell DB, Courvalin P, et al., editors. The enterococci.
  • Baldassarri L, Creti R, Recchia S, et al. Virulence factors in enterococcal infections of orthopedic devices. Int J Artif Organs. 2006;29:402–406.
  • Mohamed JA, Huang W, Nallapareddy SR, et al. Influence of origin of isolates, especially endocarditis isolates, and various genes on biofilm formation by Enterococcus faecalis. Infect Immun. 2004;72:3658–3663.
  • Gomes BPFA, Pinheiro ET, Sousa ELR, et al. Enterococcus faecalis in dental root canals detected by culture and by polymerase chain reaction analysis. Oral Sur Oral Med Oral Pathol Oral Radiol Endodontol. 2006;102:247–253.
  • Hidron AI, Edwards JR, Patel J, et al. NHSN annual update: antimicrobial-resistant pathogens associated with healthcare-associated infections: annual summary of data reported to the National Healthcare Safety Network at the Centers for Disease Control and Prevention, 2006-2007. Infect Control Hosp Epidemiol. 2008;29:996–1011.
  • Gilmore MS, Segarra RA, Booth MC, et al. Genetic structure of the Enterococcus faecalis plasmid pAD1-encoded cytolytic toxin system and its relationship to lantibiotic determinants. J Bacteriol. 1994;176:7335–7344.
  • Jett BD, Huycke MM, Gilmore MS. Virulence of enterococci. Clin Microbiol Rev. 1994;7:462–478.
  • Su Y, Sulavik M, He P, et al. Nucleotide sequence of the gelatinase gene (gelE) from Enterococcus faecalis subsp. liquefaciens. Infect Immun. 1991;59:415–420.
  • Eaton TJ, Gasson MJ. Molecular screening of Enterococcus virulence determinants and potential for genetic exchange between food and medical isolates. Appl Environ Microbiol. 2001;67:1628–1635.
  • Galli D, Lottspeich F, Wirth R. Sequence analysis of Enterococcus faecalis aggregation substance encoded by the sex pheromone plasmid pAD1. Mol Microbiol. 1990;4:895–904.
  • Bourgogne A, Singh KV, Fox KA, et al. EbpR is important for biofilm formation by activating expression of the endocarditis and biofilm-associated pilus operon (ebpABC) of Enterococcus faecalis OG1RF. J Bacteriol. 2007;189:6490–6493.
  • Nallapareddy SR, Qin X, Weinstock GM, et al. Enterococcus faecalis adhesin, ace, mediates attachment to extracellular matrix proteins collagen type IV and laminin as well as collagen type I. Infect Immun. 2000;68:5218–5224.
  • Brouns SJ, Jore MM, Lundgren M, et al. Small CRISPR RNAs guide antiviral defense in prokaryotes. Science. 2008;321:960–964.
  • Grissa I, Vergnaud G, Pourcel C. The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinformatics. 2007;8:172.
  • Makarova KS, Haft DH, Barrangou R, et al. Evolution and classification of the CRISPR–Cas systems. Nature Rev Microbiol. 2011;9:467–477.
  • Bourgogne A, Garsin DA, Qin X, et al. Large scale variation in Enterococcus faecalis illustrated by the genome analysis of strain OG1RF. Genome Biol. 2008;9:R110.
  • Haft DH, Selengut J, Mongodin EF, et al. A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput Biol. 2005;1:e60.
  • Palmer KL, Gilmore MS. Multidrug-resistant enterococci lack CRISPR-cas. MBio. 2010;1:e00227–10.
  • Gholizadeh P, Aghazadeh M, Asgharzadeh M, et al. Suppressing the CRISPR/Cas adaptive immune system in bacterial infections. Eur J Clin Microbiol Infect Dis. 2017;36:2043–2051.
  • Marraffini LA, Sontheimer EJ. CRISPR Interference Limits Horizontal Gene Transfer in Staphylococci by Targeting DNA. Science. 2008;322:1843–1845.
  • Pourcel C, Salvignol G, Vergnaud G. CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology. 2005;151:653–663.
  • Mojica FJM, Díez-Villaseñor C, García-Martínez J, et al. Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic Elements. J Mol Evol. 2005;60:174–182.
  • Facklam R, Collins M. Identification of Enterococcus species isolated from human infections by a conventional test scheme. J Clin Microbiol. 1989;27:731–734.
  • Kafil HS, Mobarez AM, Moghadam MF, et al. Gentamicin induces efaA expression and biofilm formation in Enterococcus faecalis. Microb Pathog. 2016;92:30–35.
  • Kafil HS, Mobarez AM, Moghadam MF. Adhesion and virulence factor properties of Enterococci isolated from clinical samples in Iran. Indian J Pathol Microbiol. 2013;56:238.
  • Kariyama R, Mitsuhata R, Chow JW, et al. Simple and reliable multiplex PCR assay for surveillance isolates of vancomycin-resistant enterococci. J Clin Microbiol. 2000;38:3092–3095.
  • Aghazadeh M, Zahedi Bialvaei A, Kabiri F, et al. Survey of the antibiofilm and antimicrobial effects of zingiber officinale (in Vitro Study). Jundishapur J Microbiol. 2016;9:e30167.
  • Kafil HS, Mobarez AM. Assessment of biofilm formation by enterococci isolates from urinary tract infections with different virulence profiles. J King Saud Univ Sci. 2015;27:312–317.
  • Gaspar F, Crespo M, Lopes MS. Proposal for a reliable enterococcal cytolysin production assay avoiding apparent incongruence between phenotype and genotype. J Med Microbiol. 2009;58:1122–1124.
  • Pickett M, Greenwood J, Harvey S. Tests for detecting degradation of gelatin: comparison of five methods. J Clin Microbiol. 1991;29:2322–2325.
  • Burley KM, Sedgley CM. CRISPR-Cas, a prokaryotic adaptive immune system, in endodontic, oral, and multidrug-resistant hospital-acquired enterococcus faecalis. J Endod. 2012;38:1511–1515.
  • Hullahalli K, Rodrigues M, Palmer KL. Exploiting CRISPR-Cas to manipulate Enterococcus faecalis populations. eLife. 2017;6:e26664.
  • Hew CM, Korakli M, Vogel RF. Expression of virulence-related genes by Enterococcus faecalis in response to different environments. Syst Appl Microbiol. 2007;30:257–267.
  • Martin B, Garriga M, Hugas M, et al. Genetic diversity and safety aspects of enterococci from slightly fermented sausages. J Appl Microbiol. 2005;98:1177–1190.
  • Shankar N, Coburn P, Pillar C, et al. Enterococcal cytolysin: activities and association with other virulence traits in a pathogenicity island. Int J Med Microbiol. 2004;293:609–618.
  • Shankar N, Lockatell CV, Baghdayan AS, et al. Role of Enterococcus faecalissurface protein ESP in the pathogenesis of ascending urinary tract infection. Infect Immun. 2001;69:4366–4372.
  • Duggan JM, Sedgley CM. Biofilm formation of oral and endodontic enterococcus faecalis. J Endod. 2007;33:815–818.
  • Sun J, Sundsfjord A, Song X. Enterococcus faecalis from patients with chronic periodontitis: virulence and antimicrobial resistance traits and determinants. Eur J Clin Microbiol Infect Dis. 2012;31:267–272.
  • Sedgley CM, Molander A, Flannagan SE, et al. Virulence, phenotype and genotype characteristics of endodontic Enterococcus spp. Oral Microbiol Immunol. 2005;20:10–19.
  • Lindenstrauß AG, Pavlovic M, Bringmann A, et al. Comparison of genotypic and phenotypic cluster analyses of virulence determinants and possible role of CRISPR elements towards their incidence in Enterococcus faecalis and Enterococcus faecium. Syst Appl Microbiol. 2011;34:553–560.
  • Finlay BB, Falkow S. Common themes in microbial pathogenicity revisited. Microbiol Mol Biol Rev. 1997;61:136–169.
  • Palmer KL, Carniol K, Manson JM, et al. High-quality draft genome sequences of 28 Enterococcus sp. isolates. J Bacteriol. 2010;192:2469–2470.
  • Toro M, Cao G, Ju W, et al. Association of clustered regularly interspaced short palindromic repeat (CRISPR) elements with specific serotypes and virulence potential of Shiga toxin-producing Escherichia coli. Appl Environ Microbiol. 2014;80:1411–1420.
  • Touchon M, Charpentier S, Pognard D, et al. Antibiotic resistance plasmids spread among natural isolates of Escherichia coli in spite of CRISPR elements. Microbiology. 2012;158:2997–3004.
  • Godde JS, Bickerton A. The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes. J Mol Evol. 2006;62:718–729.
  • Shankar V, Baghdayan AS, Huycke MM, et al. Infection-derived Enterococcus faecal strains are enriched in esp, a gene encoding a novel surface protein. Infect Immun. 1999;67:193–200.
  • Vankerckhoven V, Van Autgaerden T, Vael C, et al. Development of a multiplex PCR for the detection of asa1, gelE, cylA, esp, and hyl genes in enterococci and survey for virulence determinants among European hospital isolates of Enterococcus faecium. J Clin Microbiol. 2004;42:4473–4479.
  • Lowe A, Lambert P, Smith A. Cloning of an Enterococcus faecalis endocarditis antigen: homology with adhesins from some oral streptococci. Infect Immun. 1995;63:703–706.
  • Nallapareddy SR, Murray BE. Ligand-signaled upregulation of Enterococcus faecalis ace transcription, a mechanism for modulating host-E. faecalis interaction. Infect Immun. 2006;74:4982–4989.