MALDI-TOF MS for rapid detection and differentiation between Tet(X)-producers and non-Tet(X)-producing tetracycline-resistant Gram-negative bacteria

References

• Fang LX, Chen C, Cui CY, et al. Emerging High-Level Tigecycline Resistance: novel Tetracycline Destructases Spread via the Mobile Tet(X). Bioessays. 2020;42(8):e2000014.
   PubMed Web of Science ®Google Scholar
• Chopra I, Roberts M. Tetracycline antibiotics: mode of action, applications, molecular biology, and epidemiology of bacterial resistance. Microbiol Mol Biol Rev. 2001;65(2):232–260. second page, table of contents.
   PubMed Web of Science ®Google Scholar
• Thaker M, Spanogiannopoulos P, Wright GD. The tetracycline resistome. Cell Mol Life Sci. 2010;67(3):419–431.
   PubMed Web of Science ®Google Scholar
• Hou J, Wang C, Mao D, et al. The occurrence and fate of tetracyclines in two pharmaceutical wastewater treatment plants of Northern China. Environ Sci Pollut Res Int. 2016;23(2):1722–1731.
   PubMed Web of Science ®Google Scholar
• Jiang X, Shi L. Distribution of tetracycline and trimethoprim/sulfamethoxazole resistance genes in aerobic bacteria isolated from cooked meat products in Guangzhou, China. Food Control. 2013;30(1):30–34.
   Web of Science ®Google Scholar
• Li Y, Cao W, Liang S, et al. Metagenomic characterization of bacterial community and antibiotic resistance genes in representative ready-to-eat food in southern China. Sci Rep. 2020;10(1):15175.
   PubMed Web of Science ®Google Scholar
• Makowska N, Koczura R, Mokracka J. Class 1 integrase, sulfonamide and tetracycline resistance genes in wastewater treatment plant and surface water. Chemosphere. 2016;144:1665–1673.
   PubMed Web of Science ®Google Scholar
• Naquin A, Shrestha A, Sherpa M, et al. Presence of antibiotic resistance genes in a sewage treatment plant in Thibodaux. Vol. 188. Louisiana US: Bioresour Technol; 2015. p. 79–83.
   Google Scholar
• Li W, Atkinson GC, Thakor NS, et al. Mechanism of tetracycline resistance by ribosomal protection protein Tet(O). Nat Commun. 2013;4(1):1477.
   PubMedGoogle Scholar
• Linkevicius M, Sandegren L, Andersson DI. Potential of Tetracycline Resistance Proteins To Evolve Tigecycline Resistance. Antimicrob Agents Chemother. 2016;60(2):789–796.
   PubMed Web of Science ®Google Scholar
• Tuckman M, Petersen PJ, Howe AY, et al. Occurrence of tetracycline resistance genes among Escherichia coli isolates from the phase 3 clinical trials for tigecycline. Antimicrob Agents Chemother. 2007;51(9):3205–3211.
   PubMed Web of Science ®Google Scholar
• Tyson GH, McDermott PF, Li C, et al. WGS accurately predicts antimicrobial resistance in Escherichia coli. J Antimicrob Chemother. 2015;70(10):2763–2769.
   PubMed Web of Science ®Google Scholar
• Shin SW, Shin MK, Jung M, et al. Prevalence of Antimicrobial Resistance and Transfer of Tetracycline Resistance Genes in Escherichia coli Isolates from Beef Cattle. Appl Environ Microbiol. 2015;81(16):5560–5566.
   PubMed Web of Science ®Google Scholar
• Cui CY, Chen C, Liu BT, et al. Co-occurrence of Plasmid-Mediated Tigecycline and Carbapenem Resistance in Acinetobacter spp. from Waterfowls and Their Neighboring Environment. Antimicrob Agents Chemother. 2020a;64(5). DOI:10.1128/AAC.02502-19
   Web of Science ®Google Scholar
• Cui ZH, Ni WN, Tang T, et al. Rapid detection of plasmid-mediated high-level tigecycline resistance in Escherichia coli and Acinetobacter spp. J Antimicrob Chemother. 2020b;75(6):1479–1483.
   PubMed Web of Science ®Google Scholar
• Cui Z-H, Zheng Z-J, Tang T, et al. Rapid Detection of High-Level Tigecycline Resistance in Tet(X)-Producing Escherichia coli and Acinetobacter spp. Based on MALDI-TOF MS. Front Cell Infect Microbiol. 2020a;10:583341.
   PubMedGoogle Scholar
• Sun J, Chen C, Cui CY, et al. Plasmid-encoded tet(X) genes that confer high-level tigecycline resistance in Escherichia coli. Nat Microbiol. 2019;4(9):1457–1464.
   PubMed Web of Science ®Google Scholar
• CLSI. Performance Standards for Antimicrobial Susceptibility Testing, M100. 28th Edn ed. Wayne PA: CLSI; 2018.
   Google Scholar
• Chen C, Chen L, Zhang Y, et al. Detection of chromosome-mediated tet(X4)-carrying Aeromonas caviae in a sewage sample from a chicken farm. J Antimicrob Chemother. 2019;74(12):3628–3630.
   PubMed Web of Science ®Google Scholar
• He T, Wang R, Liu D, et al. Emergence of plasmid-mediated high-level tigecycline resistance genes in animals and humans. Nat Microbiol. 2019;4(9):1450–1456.
   PubMed Web of Science ®Google Scholar
• Liu D, Zhai W, Song H, et al. Identification of the novel tigecycline resistance gene tet(X6) and its variants in Myroides, Acinetobacter and Proteus of food animal origin. J Antimicrob Chemother. 2020;75(6):1428–1431.
   PubMed Web of Science ®Google Scholar
• Wang L, Liu D, Lv Y, et al. Novel Plasmid-Mediated tet(X5) Gene Conferring Resistance to Tigecycline, Eravacycline, and Omadacycline in a Clinical Acinetobacter baumannii Isolate. Antimicrob Agents Chemother. 2019;64(1). DOI:10.1128/AAC.01326-19
   Web of Science ®Google Scholar
• Hanley JA,MB, McNeil BJ. The Meaning and Use of the Area under a Receiver Operating Characteristic (Roc) Curve. Curve. Radiology. 1982;143(1):29–36.
   PubMed Web of Science ®Google Scholar
• Y WJ. Index for rating diagnostic tests. Cancer. 1950 Jan;31: 32–5 .
   PubMed Web of Science ®Google Scholar
• Pan C, Xu S, Zhou H, et al. Recent developments in methods and technology for analysis of biological samples by MALDI-TOF-MS. Anal Bioanal Chem. 2007;387(1):193–204.
   PubMed Web of Science ®Google Scholar
• Weis C, Horn M, Rieck B, et al. Topological and kernel-based microbial phenotype prediction from MALDI-TOF mass spectra. Bioinformatics. 2020;36(Supplement_1):i30–i38.
   PubMedGoogle Scholar
• Cavanaugh SE, Bathrick AS. Direct PCR amplification of forensic touch and other challenging DNA samples: a review. Forensic Sci Int Genet. 2018;32:40–49.
   PubMed Web of Science ®Google Scholar
• Hawkins SF, Guest PC. Multiplex Analyses Using Real-Time Quantitative PCR. Methods Mol Biol. 2017; 1546:125–133.
   PubMedGoogle Scholar
• Cornejo J, Pokrant E, Araya D, et al. Residue depletion of oxytetracycline (OTC) and 4-epi-oxytetracycline (4-epi-OTC) in broiler chicken’s claws by liquid chromatography-tandem mass spectrometry (LC-MS/MS). Food Addit Contam Part A Chem Anal Control Expo Risk Assess. 2017;34(4):494–500.
   PubMed Web of Science ®Google Scholar
• Lawton SJ, Weis AM, Byrne BA, et al. Comparative analysis of Campylobacter isolates from wild birds and chickens using MALDI-TOF MS, biochemical testing, and DNA sequencing. J Vet Diagn Invest. 2018;30(3):354–361.
   PubMed Web of Science ®Google Scholar
• Macone AB, Caruso BK, Leahy RG, et al. In vitro and in vivo antibacterial activities of omadacycline, a novel aminomethylcycline. Antimicrob Agents Chemother. 2014;58(2):1127–1135.
   PubMed Web of Science ®Google Scholar
• Park J, Gasparrini AJ, Reck MR, et al. Plasticity, dynamics, and inhibition of emerging tetracycline resistance enzymes. Nat Chem Biol. 2017;13(7):730–736.
   PubMed Web of Science ®Google Scholar
• Ji Y, Shi Y, Dong W, et al. Thermo-activated persulfate oxidation system for tetracycline antibiotics degradation in aqueous solution. Chem Eng J. 2016;298:225–233.
   Web of Science ®Google Scholar
• Lv L, Wan M, Wang C, et al. Emergence of a Plasmid-Encoded Resistance-Nodulation-Division Efflux Pump Conferring Resistance to Multiple Drugs, Including Tigecycline, in Klebsiella pneumoniae. mBio. 2020;11(2). DOI:10.1128/mBio.02930-19
   Web of Science ®Google Scholar
• Akimowicz M, Bucka-Kolendo J. MALDI-TOF MS – application in food microbiology. Acta Biochim Pol. 2020. DOI:10.18388/abp.2020_5380
   PubMed Web of Science ®Google Scholar
• Welker M, Van Belkum A, Girard V, et al. An update on the routine application of MALDI-TOF MS in clinical microbiology. Expert Rev Proteomics. 2019;16(8):695–710.
   PubMed Web of Science ®Google Scholar
• Gomes MP, Moreira Brito JC, Cristina Rocha D, et al. Individual and combined effects of amoxicillin, enrofloxacin, and oxytetracycline on Lemna minor physiology. Ecotoxicol Environ Saf. 2020;203:111025.
   PubMed Web of Science ®Google Scholar
• Xiao Y, Xiong T, Meng X, et al. Different influences on mitochondrial function, oxidative stress and cytotoxicity of antibiotics on primary human neuron and cell lines. J Biochem Mol Toxicol. 2019;33(4):e22277.
   PubMed Web of Science ®Google Scholar
• Han CH, Park HD, Kim SB, et al. Oxidation of tetracycline and oxytetracycline for the photo-Fenton process: their transformation products and toxicity assessment. Water Res. 2020;172:115514.
   PubMed Web of Science ®Google Scholar
• Yin Z, Xia D, Shen M, et al. Tetracycline degradation by Klebsiella sp. strain TR5: proposed degradation pathway and possible genes involved. Chemosphere. 2020;253:126729.
   PubMed Web of Science ®Google Scholar