Multiple retrograde tracing methods compatible with 3DISCO clearing

References

• Sherrington CS. Notes on the arrangement of some motor fibres in the lumbo-sacral plexus. J Physiol. 1892;13(6):621–772.17.
   PubMedGoogle Scholar
• Romanes GJ. The development and significance of the cell columns in the ventral horn of the cervical and upper thoracic spinal cord of the rabbit. J Anat. 1941;76(Pt 1):112–130.5.
   PubMedGoogle Scholar
• Romanes GJ. Motor localization and the effects of nerve injury on the ventral horn cells of the spinal cord. J Anat. 1946;80:117–131.
   Web of Science ®Google Scholar
• Romanes GJ. The motor cell columns of the lumbo-sacral spinal cord of the cat. J Comp Neurol. 1951;94(2):313–363.
   PubMed Web of Science ®Google Scholar
• Rexed B. A cytoarchitectonic atlas of the spinal cord in the cat. J Comp Neurol. 1954;100(2):297–379.
   PubMed Web of Science ®Google Scholar
• Kristensson K, Olsson Y. Retrograde axonal transport of protein. Brain Res. 1971;29(2):363–365.
   PubMed Web of Science ®Google Scholar
• Kristensson K, Olsson Y. Uptake and retrograde axonal transport of peroxidase in hypoglossal neurons. Electron microscopical localization in the neuronal perikaryon. Acta Neuropathol. 1971;19(1):1–9.
   PubMed Web of Science ®Google Scholar
• McHanwell S, Biscoe TJ. The localization of motoneurons supplying the hindlimb muscles of the mouse. Philos Trans R Soc Lond B Biol Sci. 1981;293(1069):477–508.
   PubMed Web of Science ®Google Scholar
• Jenny AB, Inukai J. Principles of motor organization of the monkey cervical spinal cord. J Neurosci. 1983;3(3):567–575.
   PubMed Web of Science ®Google Scholar
• Nicolopoulos-Stournaras S, Iles JF. Motor neuron columns in the lumbar spinal cord of the rat. J Comp Neurol. 1983;217(1):75–85.
   PubMed Web of Science ®Google Scholar
• Brichta AM, Callister RJ, Peterson EH. Quantitative analysis of cervical musculature in rats: histochemical composition and motor pool organization. I. Muscles of the spinal accessory complex. J Comp Neurol. 1987;255(3):351–368.
   PubMed Web of Science ®Google Scholar
• Callister RJ, Brichta AM, Peterson EH. Quantitative analysis of cervical musculature in rats: histochemical composition and motor pool organization. II. Deep dorsal muscles. J Comp Neurol. 1987;255(3):369–385.
   PubMed Web of Science ®Google Scholar
• Horner M, Kummel H. Topographical representation of shoulder motor nuclei in the cat spinal cord as revealed by retrograde fluorochrome tracers. J Comp Neurol. 1993;335(3):309–319.
   PubMed Web of Science ®Google Scholar
• Novikova L, Novikov L, Kellerth JO. Persistent neuronal labeling by retrograde fluorescent tracers: a comparison between Fast Blue, Fluoro-Gold and various dextran conjugates. J Neurosci Methods. 1997;74(1):9–15.
   PubMed Web of Science ®Google Scholar
• Vanderhorst VG, Holstege G. Organization of lumbosacral motoneuronal cell groups innervating hindlimb, pelvic floor, and axial muscles in the cat. J Comp Neurol. 1997;382(1):46–76.
   PubMed Web of Science ®Google Scholar
• McKenna JE, Prusky GT, Whishaw IQ. Cervical motoneuron topography reflects the proximodistal organization of muscles and movements of the rat forelimb: a retrograde carbocyanine dye analysis. J Comp Neurol. 2000;419(3):286–296.
   PubMed Web of Science ®Google Scholar
• Choi D, Li D, Raisman G. Fluorescent retrograde neuronal tracers that label the rat facial nucleus: a comparison of Fast Blue, Fluoro-ruby, Fluoro-emerald, Fluoro-Gold and DiI. J Neurosci Methods. 2002;117(2):167–172.
   PubMed Web of Science ®Google Scholar
• Tosolini AP, Morris R. Spatial characterization of the motor neuron columns supplying the rat forelimb. Neuroscience. 2012;200:19–30.
   PubMed Web of Science ®Google Scholar
• Bacskai T, Fu Y, Sengul G, et al. Musculotopic organization of the motor neurons supplying forelimb and shoulder girdle muscles in the mouse. Brain Struct Funct. 2013;218(1):221–238.
   PubMed Web of Science ®Google Scholar
• Tosolini AP, Mohan R, Morris R. Targeting the full length of the motor end plate regions in the mouse forelimb increases the uptake of fluoro-gold into corresponding spinal cord motor neurons. Front Neurol. 2013;4:58.
   PubMed Web of Science ®Google Scholar
• Bacskai T, Rusznak Z, Paxinos G, et al. Musculotopic organization of the motor neurons supplying the mouse hindlimb muscles: a quantitative study using Fluoro-Gold retrograde tracing. Brain Struct Funct. 2014;219(1):303–321.
   PubMed Web of Science ®Google Scholar
• Mohan R, Tosolini AP, Morris R. Targeting the motor end plates in the mouse hindlimb gives access to a greater number of spinal cord motor neurons: an approach to maximize retrograde transport. Neuroscience. 2014;274:318–330.
   PubMed Web of Science ®Google Scholar
• Mohan R, Tosolini AP, Morris R. Segmental distribution of the motor neuron columns that supply the rat hindlimb: a muscle/motor neuron tract-tracing analysis targeting the motor end plates. Neuroscience. 2015;307:98–108.
   PubMed Web of Science ®Google Scholar
• Erturk A, Mauch CP, Hellal F, et al. Three-dimensional imaging of the unsectioned adult spinal cord to assess axon regeneration and glial responses after injury. Nat Med. 2011;18(1):166–171.
   PubMed Web of Science ®Google Scholar
• Erturk A, Becker K, Jahrling N, et al. Three-dimensional imaging of solvent-cleared organs using 3DISCO. Nat Protoc. 2012;7(11):1983–1995.
   PubMed Web of Science ®Google Scholar
• Chung K, Wallace J, Kim SY, et al. Structural and molecular interrogation of intact biological systems. Nature. 2013;497(7449):332–337.
   PubMed Web of Science ®Google Scholar
• Ke MT, Fujimoto S, Imai T. SeeDB: a simple and morphology-preserving optical clearing agent for neuronal circuit reconstruction. Nat Neurosci. 2013;16(8):1154–1161.
   PubMed Web of Science ®Google Scholar
• Kuwajima T, Sitko AA, Bhansali P, et al. ClearT: a detergent- and solvent-free clearing method for neuronal and non-neuronal tissue. Development (Cambridge, England). 2013;140(6):1364–1368.
   PubMed Web of Science ®Google Scholar
• Susaki EA, Tainaka K, Perrin D, et al. Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis. Cell. 2014;157(3):726–739.
   PubMed Web of Science ®Google Scholar
• Tainaka K, Kubota SI, Suyama TQ, et al. Whole-body imaging with single-cell resolution by tissue decolorization. Cell. 2014;159(4):911–924.
   PubMed Web of Science ®Google Scholar
• Yang B, Treweek JB, Kulkarni RP, et al. Single-cell phenotyping within transparent intact tissue through whole-body clearing. Cell. 2014;158(4):945–958.
   PubMed Web of Science ®Google Scholar
• Hama H, Hioki H, Namiki K, et al. ScaleS: an optical clearing palette for biological imaging. Nat Neurosci. 2015;18(10):1518–1529.
   PubMed Web of Science ®Google Scholar
• Susaki EA, Tainaka K, Perrin D, et al. Advanced CUBIC protocols for whole-brain and whole-body clearing and imaging. Nat Protoc. 2015;10(11):1709–1727.
   PubMed Web of Science ®Google Scholar
• Pan C, Cai R, Quacquarelli FP, et al. Shrinkage-mediated imaging of entire organs and organisms using uDISCO. Nat Methods. 2016;13(10):859–867.
   PubMed Web of Science ®Google Scholar
• Yin X, Yu T, Chen B, et al. Spatial distribution of motor endplates and its adaptive change in skeletal muscle. Theranostics. 2019;9(3):734–746.
   PubMed Web of Science ®Google Scholar
• Orlich M, Kiefer F. A qualitative comparison of ten tissue clearing techniques. Histol Histopathol. 2017;33(2):181–199.
   PubMed Web of Science ®Google Scholar
• Zygelyte E, Bernard ME, Tomlinson JE, et al. RetroDISCO: clearing technique to improve quantification of retrograde labeled motor neurons of intact mouse spinal cords. J Neurosci Methods. 2016;271:34–42.
   PubMed Web of Science ®Google Scholar
• Launay PS, Godefroy D, Khabou H, et al. Combined 3DISCO clearing method, retrograde tracer and ultramicroscopy to map corneal neurons in a whole adult mouse trigeminal ganglion. Exp Eye Res. 2015;139:136–143.
   PubMed Web of Science ®Google Scholar