9
Views
18
CrossRef citations to date
0
Altmetric
Article

GATA-1 Modulates the Chromatin Structure and Activity of the Chicken α-Globin 3′ Enhancer

&
Pages 575-586 | Received 28 May 2007, Accepted 23 Oct 2007, Published online: 27 Mar 2023

REFERENCES

  • Almer, A., H. Rudolph, A. Hinnen, and W. Horz. 1986. Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activity DNA elements. EMBO J. 5:2689–2696.
  • Anguita, E., J. Hughes, C. Heyworth, G. A. Blobel, W. G. Wood, and D. R. Higgs. 2004. Globin gene activation during haemapoiesis is driven by complexes nucleated by GATA-1 and GATA-2. EMBO J. 23:2841–2852.
  • Beug, H., A. von Kirchbach, G. Doderlein, J. F. Conscience, and T. Graf. 1979. Chicken hematopoietic cells transformed by seven strains of defective avian leukemia viruses display three distinct phenotypes of differentiation. Cell 18:375–390.
  • Beug, H., S. Palmieri, C. Freudenstein, H. Zentgraf, and T. Graf. 1982. Hormone-dependent terminal differentiation in vitro of chicken erythroleukemia cells transformed by ts mutants of avian erythroblastosis virus. Cell 28:907–919.
  • Blackwood, E. M., and J. T. Kadonaga. 1998. Going the distance: a current view of enhancer action. Science 281:60–63.
  • Boyes, J., and G. Felsenfeld. 1996. Tissue-specific factors additively increase the probability of the all-or-none formation of a hypersensitive site. EMBO J. 15:2496–2507.
  • Boyes, J., J. Omichinski, D. Clark, M. Pikaart, and G. Felsenfeld. 1998. Perturbation of nucleosome structure by the erythroid transition factor GATA-1. J. Mol. Biol. 279:529–544.
  • Bresnick, E. H., M. L. Matowicz, S. Pal, and K. D. Johnson. 2005. Developmental control via GATA factor interplay at chromatin domains. J. Cell. Physiol. 205:1–9.
  • Bulger, M., and M. Groudine. 1999. Looping versus linking: towards a model for long distance gene activation. Genes Dev. 13:2465–2477.
  • Chakalova, L., E. Debrand, J. A. Mitchell, C. S. Osborne, and P. Fraser. 2005. Replication and transcription: shaping the landscape of the genome. Nat. Rev. Genet. 6:669–677.
  • Chen, E. S., M. Yanagida, and K. Takahashi. 2003. Does a GATA factor make the bed for centromeric nucleosomes? Cell Cycle 2:277–278.
  • Cirillo, L. A., F. R. Lin, I. Cuesta, D. Friedman, M. Jarnik, and K. S. Zaret. 2002. Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4. Mol. Cell 9:279–289.
  • Dieken, E. S., E. M. Epner, S. Fiering, R. E. Fournier, and M. Groudine. 1996. Efficient modification of human chromosomal alleles using recombination-proficient chicken/human microcell hybrids. Nat. Genet. 12:174–182.
  • Feng, Y. Q., J. Seibler, R. Alani, A. Eisen, K. A. Westerman, P. Leboulch, S. Fiering, and E. E. Bouhassira. 1999. Site-specific chromosomal integration in mammalian cells: highly efficient CRE recombinase-mediated cassette exchange. J. Mol. Biol. 292:779–785.
  • Gal-Yam, E. N., S. Jeong, A. Tamay, G. Egger, A. S. Lee, and P. A. Jones. 2006. Constitutive nucleosome depletion and ordered factor assembly at the GRP78 promoter revealed by single molecule footprinting. PLoS Genet. 2:1451–1463.
  • Guerrero, G., P. Delgado-Olguín, M. Escamilla-Del-Arenal, M. Furlan-Magaril, E. Rebollar, I. A. De La Rosa-Velázquez, E. Soto-Reyes, H. Rincón-Arano, C. Valdes-Quezada, V. Valadez-Graham, and F. Recillas-Targa. 2006. Globin genes transcriptional switching, chromatin structure and linked lessons to epigenetics in cancer: a comparative overview. Comp. Biochem. Physiol. A 147:750–760.
  • Hahn, S. 2004. Structure and mechanism of the RNA polymerase II transcription machinery. Nat. Struct. Mol. Biol. 11:394–402.
  • Hebbes, T. R., A. L. Clayton, A. W. Thorne, and C. Crane-Robinson. 1994. Core histone hyperacetylation co-maps with generalized DNase I sensitivity in the chicken β-globin chromosomal domain. EMBO J. 13:1823–1830.
  • Heintzman, N., R. K. Stuart, G. Hon, Y. Fu, C. W. Ching, R. B. Hawkins, L. O. Barrera, S. V. Calcar, C. Qu, K. A. Ching, W. Wang, Z. Weng, R. D. Green, G. E. Crawford, and B. Ren. 2007. Distinct and predictive chromatin signature of transcriptional promoters and enhancers in the human genome. Nat. Genet. 39:311–318.
  • Im, H., J. A. Grass, K. D. Johnson, S. Kim, M. E. Bayer, A. N. Imbalzano, J. J. Bieker, and E. H. Bresnick. 2005. Chromatin domain activation via GATA-1 utilization of a small subset of dispersed GATA motifs within a broad chromosoma region. Proc. Natl. Acad. Sci. USA 102:17065–17070.
  • Ioshikhes, I. P., I. Albert, S. J. Zanton, and B. F. Pugh. 2006. Nucleosome positions predicted through comparative genomics. Nat. Genet. 10:1210–1214.
  • Johnson, K. D., J. A. Grass, M. E. Boyer, C. M. Kiekhaefer, G. A. Blobel, M. J. Weiss, and E. H. Bresnick. 2002. Cooperative activities of hematopoietic regulators recruit RNA polymerase II to a tissue-specific chromatin domain. Proc. Natl. Acad. Sci. USA 99:11760–11765.
  • Kim, A., S. H. Song, M. Brand, and A. Dean. 2007. Nucleosome and transcription activator antagonism at human β-globin locus control region DNase I hypersensitive sites. Nucleic Acids Res. 35:5831–5838.
  • Kutney, S. N., R. Hong, T. Macfarlan, and D. Chakravarti. 2004. A signaling role of histone-binding proteins and INHAT subunits pp32 and set/TAF-Iβ in intergenic chromatin hypoacetylation and transcriptional repression. J. Biol. Chem. 279:30850–30855.
  • Layon, M. E., C. J. Ackley, R. J. West, and C. H. Lowrey. 2007. Expression of GATA-1 in a non-hematopoietic cell line induces β-globin locus control region chromatin structure remodeling and an erythroid pattern of gene expression. J. Mol. Biol. 366:737–744.
  • Ling, J. Q., T. Li, J. F. Hu, T. H. Va, H. L. Chen, X. W. Qiu, A. M. Cherry, and A. R. Hoffman. 2006. CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1. Science 312:269–272.
  • Litt, M. D., M. Simpson, F. Recillas-Targa, M. N. Prioleau, and G. Felsenfeld. 2001. Transitions in histone acetylation reveal boundaries of three separately regulated neighboring loci. EMBO J. 20:2224–2235.
  • Mellorm, J. 2005. The dynamics of chromatin remodeling at promoters. Mol. Cell 19:147–157.
  • Morceau, F., M. Schnekenburger, M. Dicato, and M. Diederich. 2004. GATA-1: friends, brothers and coworkers. Ann. N. Y. Acad. Sci. 1030:537–554.
  • Prioleau, M. N., P. Nony, M. Simpson, and G. Felsenfeld. 1999. An insulator element and condensed chromatin region separate the chicken β-globin locus from an independently regulated erythroid-specific folate receptor gene. EMBO J. 18:4035–4048.
  • Recillas-Targa, F., C. V. de Moura Gallo, M. Huesca, K. Scherrer, and L. Marcaud. 1993. Silencer and enhancer elements located at the 3′-side of the chicken and duck α-globin-encoding gene domains. Gene 129:229–237.
  • Recillas-Targa, F. 2000. The chicken α- and β-globin domains and their chromatin organization. Cell. Mol. Biol. Lett. 5:451–467.
  • Rincón-Arano, H., V. Valadez-Graham, G. Guerrero, M. Escamilla-Del-Arenal, and F. Recillas-Targa. 2005. YY1 and GATA-1 interaction modulate the chicken 3′-side α-globin enhancer activity. J. Mol. Biol. 349:961–975.
  • Rodríguez, P., E. Bonte, J. Krijgsveld, K. E. Kolodzeij, B. Guyot, A. J. R. Heck, P. Vyas, E. deBoer, F. Grosveld, and J. Strouboulis. 2005. GATA-1 forms distinct activating and repressive complexes in erythroid cells. EMBO J. 24:2354–2366.
  • Sawado, T., K. Igarashi, and M. Groudine. 2001. Activation of β-major globin gene transcription is associated with recruitment of NF-E2 to the β-globin LCR and gene promoter. Proc. Natl. Acad. Sci. USA 98:10226–10231.
  • Segal, E., Y. Fondufe-Mittendorf, L. Chen, A. Thastrom, Y. Field, I. K. Moore, J.-P. Z. Wang, and J. Widom. 2006. A genomic code for nucleosome positioning. Nature 442:772–778.
  • Vakoc, C. R., D. L. Letting, N. Gheldof, T. Sawado, M. A. Bender, M. Groudine, M. J. Weiss, J. Dekker, and G. A. Blobel. 2005. Proximity among distant regulatory elements at the β-globin locus requires GATA-1 and FOG-1. Mol. Cell 17:453–462.
  • Vernimmen, D., M. De Gobbi, J. A., Sloane-Stanley, W. G. Wood, and D. R. Higgs. 2007. Long-range chromosomal interactions regulate the timing of the transition between paused and active gene expression. EMBO J. 26:2041–2051.
  • West, A. G., and P. Fraser. 2005. Remote control of gene transcription. Hum. Mol. Genet. 14:R101–R111.
  • Zhao, H., and A. Dean. 2004. An insulator block spreading of histone acetylation and interferes with RNA polymerase II transfer between an enhancer and gene. Nucleic Acids Res. 32:4903–4919.
  • Zhou, J., C. M. Chau, Z. Deng, R. Shiekhattar, M.-P. Spindler, A. Schepers, and P. M. Lieberan. 2005. Cell cycle regulation of chromatin at an origin of DNA replication. EMBO J. 24:1406–1417.
  • Zou, Y., Q. Yu, and X. Bi. 2006. Asymmetric positioning of nucleosomes and directional establishment of transcriptionally silent chromatin by Saccharomyces cerevisiae silencers. Mol. Cell. Biol. 26:7806–7819.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.