RNA Destabilization by the Granulocyte Colony-Stimulating Factor Stem-Loop Destabilizing Element Involves a Single Stem-Loop That Promotes Deadenylation

REFERENCES

• Binder, R., J. A. Horowitz, J. P. Basilion, D. M. Koeller, R. D. Klausner, and J. B. Harford. 1994. Evidence that the pathway of transferrin receptor mRNA degradation involves an endonucleolytic cleavage within the 3′ UTR and does not involve poly(A) tail shortening. EMBO J. 13: 1969–1980.
   PubMed Web of Science ®Google Scholar
• Binder, R., S.-P. L. Hwang, R. Ratnasabapathy, and D. L. Williams. 1989. Degradation of apolipoprotein II mRNA occurs via endonucleolytic cleavage at 5′-AAU-3′/5/-UAA-3′ elements in single-stranded loop domains of the 3′-noncoding region. J. Biol. Chem. 264: 16910–16918.
   PubMed Web of Science ®Google Scholar
• Brewer, G., and J. Ross. 1988. Poly(A) shortening and degradation of the 3′ A+U-rich sequences of human c -myc mRNA in a cell-free system. Mol. Cell. Biol. 8: 1697–1708.
   PubMed Web of Science ®Google Scholar
• Brown, B. D., I. D. Zipkin, and R. M. Harland. 1993. Sequence-specific endonucleolytic cleavage and protection of mRNA in Xenopus and Drosophila. Genes Dev. 7: 1620–1631.
   PubMedGoogle Scholar
• Brown, C. Y., C. A. Lagnado, and G. J. Goodall. 1996. A cytokine mRNA-destabilizing element that is structurally and functionally distinct from A+U-rich elements. Proc. Natl. Acad. Sci. USA 93: 13721–13725.
   PubMedGoogle Scholar
• Brown, C. Y., C. A. Lagnado, M. A. Vadas, and G. J. Goodall. 1996. Differential regulation of the stability of cytokine mRNAs in lipopolysaccharide-activated blood monocytes in response to interleukin-10. J. Biol. Chem. 271: 20108–20112.
   PubMedGoogle Scholar
• Chen, C. Y., F. Del Gatto-Konczak, Z. Wu, and M. Karin. 1998. Stabilization of interleukin-2 mRNA by the c-Jun NH2-terminal kinase pathway. Science 280: 1945–1949.
   PubMed Web of Science ®Google Scholar
• Chen, C. Y., N. Xu, and A. B. Shyu. 1995. mRNA decay mediated by two distinct AU-rich elements from c-fos and granulocyte-macrophage colony-stimulating factor transcripts: different deadenylation kinetics and uncoupling from translation. Mol. Cell. Biol. 15: 5777–5788.
   PubMed Web of Science ®Google Scholar
• Chomczynski, P., and N. Sacchi. 1987. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162: 156–159.
   PubMed Web of Science ®Google Scholar
• Dibbens, J. A., D. L. Miller, A. Damert, W. Risau, M. A. Vadas, and G. J. Goodall. 1999. Hypoxic regulation of vascular endothelial growth factor mRNA stability requires the cooperation of multiple RNA elements. Mol. Biol. Cell 10: 907–919.
   PubMed Web of Science ®Google Scholar
• Ernst, T. J., A. R. Ritchie, G. D. Demetri, and J. D. Griffin. 1989. Regulation of granulocyte- and monocyte-colony stimulating factor mRNA levels in human blood monocytes is mediated primarily at a post-transcriptional level. J. Biol. Chem. 264: 5700–5703.
   PubMed Web of Science ®Google Scholar
• Grosset, C., C. Y. Chen, N. Xu, N. Sonenberg, H. Jacquemin-Sablon, and A. B. Shyu. 2000. A mechanism for translationally coupled mRNA turnover: interaction between the poly(A) tail and a c-fos RNA coding determinant via a protein complex. Cell 103: 29–40.
   PubMed Web of Science ®Google Scholar
• Han, S. W., N. Ramesh, and W. R. Osborne. 1996. Cloning and expression of the cDNA encoding rat granulocyte colony-stimulating factor. Gene 175: 101–104.
   PubMed Web of Science ®Google Scholar
• Hanson, M. N., and D. R. Schoenberg. 2001. Identification of in vivo mRNA decay intermediates corresponding to sites of in vitro cleavage by polysomal ribonuclease 1. J. Biol. Chem. 276: 12331–12337.
   Google Scholar
• Heidari, M., and M. E. Kehrli, Jr. 2000. Cloning, sequencing, and analysis of cDNA encoding bovine granulocyte-colony stimulating factor. Vet. Immunol. Immunopathol. 73: 183–191.
   PubMedGoogle Scholar
• Koeffler, H. P., J. Gasson, and A. Tobler. 1988. Transcriptional and posttranscriptional modulation of myeloid colony-stimulating factor expression by tumor necrosis factor and other agents. Mol. Cell. Biol. 8: 3432–3438.
   PubMed Web of Science ®Google Scholar
• Kulmburg, P., M. Radke, B. Mezes, R. Mertelsmann, and F. M. Rosenthal. 1997. Cloning and sequence analysis of the immediate promoter region and cDNA of porcine granulocyte colony-stimulating factor. Gene 197: 361–365.
   PubMedGoogle Scholar
• Lagnado, C. A., C. Y. Brown, and G. J. Goodall. 1994. AUUUA is not sufficient to promote poly(A) shortening and degradation of an mRNA: the functional sequence within AU-rich elements may be UUAUUUA(U/A)(U/A). Mol. Cell. Biol. 14: 7984–7995.
   PubMed Web of Science ®Google Scholar
• Leutz, A., K. Damm, E. Sterneck, E. Kowenz, S. Ness, R. Frank, H. Gausepohl, Y. C. Pan, J. Smart, M. Hayman, et al. 1989. Molecular cloning of the chicken myelomonocytic growth factor (cMGF) reveals relationship to interleukin 6 and granulocyte colony stimulating factor. EMBO J. 8: 175–181.
   PubMed Web of Science ®Google Scholar
• Levy, A. P., N. S. Levy, and M. A. Goldberg. 1996. Post-transcriptional regulation of vascular endothelial growth factor by hypoxia. J. Biol. Chem. 271: 2746–2753.
   PubMed Web of Science ®Google Scholar
• Mathews, D. H., J. Sabina, M. Zuker, and D. H. Turner. 1999. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288: 911–940.
   PubMed Web of Science ®Google Scholar
• Ming, X. F., M. Kaiser, and C. Moroni. 1998. c-jun N-terminal kinase is involved in AUUUA-mediated interleukin-3 mRNA turnover in mast cells. EMBO J. 17: 6039–6048.
   PubMed Web of Science ®Google Scholar
• Nagata, S., M. Tsuchiya, S. Asano, Y. Kaziro, T. Yamazaki, O. Yamamoto, Y. Hirata, N. Kubota, M. Oheda, H. Nomura, et al. 1986. Molecular cloning and expression of cDNA for human granulocyte colony-stimulating factor. Nature 319: 415–418.
   PubMed Web of Science ®Google Scholar
• Scheper, W., D. Meinsma, P. E. Holthuizen, and J. S. Sussenbach. 1995. Long-range RNA interaction of two sequence elements required for endonucleolytic cleavage of human insulin-like growth factor II mRNAs. Mol. Cell. Biol. 15: 235–245.
   PubMedGoogle Scholar
• Tsuchiya, M., S. Asano, Y. Kaziro, and S. Nagata. 1986. Isolation and characterization of the cDNA for murine granulocyte colony-stimulating factor. Proc. Natl. Acad. Sci. USA 83: 7633–7637.
   PubMed Web of Science ®Google Scholar
• White, F. C., S. M. Carrol, and M. P. Kamps. 1995. VEGF mRNA is reversibly stabilized by hypoxia and persistently stabilised in VEGF-overexpressing human tumor cell lines. Growth Factors 12: 289–301.
   PubMed Web of Science ®Google Scholar
• Yamamoto, A., A. Iwata, K. Tuchiya, A. Katsumata, K. Oishi, T. Saito, H. Tsujimoto, A. Hasegawa, and S. Ueda. 2001. Molecular cloning and expression of the cDNA encoding feline granulocyte colony-stimulating factor. Gene 274: 263–269.
   PubMedGoogle Scholar