Identification of mRNAs Associated with αCP2-Containing RNP Complexes

REFERENCES

• Aasheim, H. C., T. Loukianova, A. Deggerdal, and E. B. Smeland. 1994. Tissue specific expression and cDNA structure of a human transcript encoding a nucleic acid binding [oligo(dC)] protein related to the pre-mRNA binding protein K. Nucleic Acids Res. 22: 959–964.
   PubMedGoogle Scholar
• Andino, R., G. Rieckhof, P. L. Achacose, and D. Baltimore. 1993. Poliovirus RNA synthesis utilizes an RNP complex formed around the 5′ end of viral RNA. EMBO J. 12: 3587–3598.
   PubMed Web of Science ®Google Scholar
• Blyn, L. B., K. M. Swiderek, O. Richards, D. C. Stahl, B. L. Semler, and E. Ehrenfeld. 1996. Poly(rC) binding protein 2 binds to stem-loop IV of the poliovirus RNA 5′ noncoding region: identification by automated liquid chromatography-tandem mass spectrometry. Proc. Natl. Acad. Sci. USA 93: 11115–11120.
   PubMed Web of Science ®Google Scholar
• Blyn, L. B., J. S. Towner, B. L. Semler, and E. Ehrenfeld. 1997. Requirement of poly(rC) binding protein 2 for translation of poliovirus RNA. J. Virol. 8: 6243–6246.
   Google Scholar
• Brown, V., P. Jin, S. Ceman, J. C. Darnell, W. T. O'Donnell, S. A. Tenenbaum, X. Jin, Y. Feng, K. D. Wilkinson, J. D. Keene, R. B. Darnell, and S. T. Warren. 2001. Microarray identification of FMRP-associated brain mRNAs and altered mRNA translational profiles in fragile X syndrome. Cell 107: 477–487.
   PubMed Web of Science ®Google Scholar
• Chkheidze, A. N., D. L. Lyakhov, A. V. Makeyev, J. Morales, J. Kong, and S. A. Liebhaber. 1999. Assembly of the α-globin mRNA stability complex reflects binary interaction between the pyrimidine-rich 3′ untranslated region determinant and poly(C) binding protein αCP. Mol. Cell. Biol. 19: 4572–4581.
   PubMed Web of Science ®Google Scholar
• Collier, B., L. Goobar-Larsson, M. Sokolowski, and S. Schwartz. 1998. Translational inhibition in vitro of human papillomavirus type 16 L2 mRNA mediated through interaction with heterogenous ribonucleoprotein K and poly(rC)-binding proteins 1 and 2. J. Biol. Chem. 273: 22648–22656.
   Google Scholar
• Crichton, R. R., S. Wilmet, R. Legssyer, and R. J. Ward. 2002. Molecular and cellular mechanisms of iron homeostasis and toxicity in mammalian cells. J. Inorg. Biochem. 91: 9–18.
   PubMed Web of Science ®Google Scholar
• Czyzyk-Krzeska, M. F., and A. C. Bendixen. 1999. Identification of the poly(C) binding protein in the complex associated with the 3′ untranslated region of erythropoietin messenger RNA. Blood 6: 2111–2120.
   Google Scholar
• Funke, B., R. Zuleger, R. Benavente, T. Schuster, M. Goller, J. Stevenin, and I. Horak. 1996. The mouse poly(C)-binding protein exists in multiple isoforms and interacts with several RNA-binding proteins. Nucleic Acids Res. 24: 3821–3828.
   PubMedGoogle Scholar
• Gamarnik, A. V., and R. Andino. 1997. Two functional complexes formed by KH domain containing proteins with the 5′ noncoding region of poliovirus RNA. RNA 3: 882–892.
   PubMed Web of Science ®Google Scholar
• Gamarnik, A. V., and R. Andino. 2000. Interactions of viral protein 3CD and poly(rC) binding protein with the 5′ untranslated region of the poliovirus genome. J. Virol. 74: 2219–2226.
   PubMed Web of Science ®Google Scholar
• Gibson, T. J., J. T. Thompson, and J. Heringa. 1993. The KH domain occurs in a diverse set of RNA-binding proteins that include the antiterminator NusA and is probably involved in binding to nucleic acid. FEBS Lett. 324: 361–366.
   PubMed Web of Science ®Google Scholar
• Graff, J., J. Cha, L. B. Blyn, and E. Ehrenfeld. 1998. Interaction of poly(rC) binding protein 2 with the 5′ noncoding region of hepatitis A virus RNA and its effects on translation. J. Virol. 1998. 72: 9668–9675.
   Google Scholar
• Gupta, P., A. A. Soyombo, A. Atashband, K. E. Wisniewski, J. M. Shelton, J. A. Richardson, R. E. Hammer, and S. L. Hofmann. 2001. Disruption of PPT1 or PPT2 causes neuronal ceroid lipofuscinosis in knockout mice. Proc. Natl. Acad. Sci. USA 98: 13566–13571.
   PubMed Web of Science ®Google Scholar
• Gutierrez-Escolano, A. L., Z. U. Brito, R. M. delAngel, and X. Jiang. 2000. Interaction of cellular proteins with the 5′ end of Norwalk virus genomic RNA. J. Virol. 74: 8558–8562.
   PubMedGoogle Scholar
• Hieronymus, H., and P. A. Silver. 2003. Genome-wide analysis of RNA-protein interactions illustrates specificity of the mRNA export machinery. Nat. Genet. 33: 155–161.
   PubMed Web of Science ®Google Scholar
• Holcik, M., and S. A. Liebhaber. 1997. Four highly stable eukaryotic mRNAs assemble 3′ untranslated region RNA-protein complexes sharing cis and trans components. Proc. Natl. Acad. Sci. USA 94: 2410–2414.
   PubMed Web of Science ®Google Scholar
• Ji, X., J. Kong, and S. A. Liebhaber. 2003. In vivo association of the stability control protein αCP with actively translating mRNAs. Mol. Cell. Biol. 23: 899–907.
   PubMed Web of Science ®Google Scholar
• Johannes, G., and P. Sarnow. 1998. Cap-independent polysomal association of natural mRNAs encoding c-myc, BiP, and eIF4G conferred by internal ribosome entry sites. RNA 4: 1500–1513.
   PubMedGoogle Scholar
• Keene, J. D., and S. A. Tenenbaum. 2002. Eukaryotic mRNPs may represent posttranscriptional operons. Mol. Cell 9: 1161–1167.
   PubMed Web of Science ®Google Scholar
• Kiledjian, M., C. T. DeMaria, G. Brewer, and K. Novick. 1997. Identification of AUF1 (heterogeneous nuclear ribonucleoprotein D) as a component of the α-globin mRNA stability complex. Mol. Cell. Biol. 17: 4870–4876.
   PubMedGoogle Scholar
• Kiledjian, M., X. Wang, and S. A. Liebhaber. 1995. Identification of two KH domain proteins in the α-globin mRNP stability complex. EMBO J. 14: 4357–4364.
   PubMed Web of Science ®Google Scholar
• Leffers, H., K. Dejgaard, and J. E. Celis. 1995. Characterization of two major cellular poly(rC)-binding human proteins, each containing three K-homologous (KH) domains. Eur. J. Biochem. 230: 447–453.
   PubMedGoogle Scholar
• Lewis, H. A., H. Chen, C. Edo, R. J. Buckanovich, Y. Y. L. Yang, K. Musunuru, R. Zhong, R. B. Darnell, and S. K. Burley. 1999. Crystal structures of Nova-1 and Nova-2-homology RNA-binding domains. Structure 7: 191–203.
   PubMed Web of Science ®Google Scholar
• Lewis, H. A., K. Musunuru, K. B. Jensen, C. Edo, H. Chen, R. B. Darnell, and S. K. Burley. 2000. Sequence-specific RNA binding by a Nova KH-domain: implications for paraneoplastic disease and the fragile X syndrome. Cell 100: 323–332.
   PubMedGoogle Scholar
• Li, L., L. Liu, J. N. Rao, A. Esmaili, E. D. Strauch, B. L. Bass, and J. Y. Wang. 2002. JunD stabilization results in inhibition of normal intestinal epithelial cell growth through P21 after polyamine depletion. Gastroenterology 123: 764–769.
   PubMed Web of Science ®Google Scholar
• Makalowski, W. 2001. The human genome structure and organization. Acta Biochim. Pol. 48: 587–598.
   PubMedGoogle Scholar
• Makeyev, A. V., A. N. Chkheidze, and S. A. Liebhaber. 1999. A set of highly conserved RNA-binding proteins, alphaCP-1 and alphaCP-2, implicated in mRNA stabilization, are coexpressed from an intronless gene and its intron-containing paralog. J. Biol. Chem. 35: 24849–24857.
   Google Scholar
• Makeyev, A. V., D. Eastmond, and S. A. Liebhaber. 2002. Targeting a KH-domain protein with RNA decoys. RNA 8: 1160–1173.
   PubMed Web of Science ®Google Scholar
• Makeyev, A. V., and S. A. Liebhaber. 2000. Identification of two novel mammalian genes establishes a subfamily of KH-domain RNA-binding proteins. Genomics 67: 301–316.
   PubMed Web of Science ®Google Scholar
• Makeyev, A. V., and S. A. Liebhaber. 2002. The poly(C)-binding proteins: a multiplicity of functions and a search for mechanisms. RNA 8: 265–278.
   PubMed Web of Science ®Google Scholar
• Murray, K. E., A. W. Roberts, and D. J. Barton. 2001. Poly(rC) binding proteins mediate poliovirus mRNA stability. RNA 7: 1126–1141.
   PubMed Web of Science ®Google Scholar
• Ostareck-Lederer, A., D. H. Ostareck, and M. W. Hentze. 1998. Cytoplasmic regulatory functions of the KH-domain proteins hnRNPs K and E1/E2. Trends Biochem. Sci. 23: 409–411.
   PubMed Web of Science ®Google Scholar
• Ostareck, D. H., A. Ostareck-Lederer, M. Wilm, B. J. Thiele, M. Mann, and M. W. Hentze. 1997. mRNA silencing in erythroid differentiation: hnRNP K and hnRNP E1 regulate 15-Lipoxygenase translation from the 3′ end. Cell 89: 597–606.
   PubMed Web of Science ®Google Scholar
• Paillard, L., D. Maniey, P. Lachaume, V. H. Legagneux, and B. Osborne. 2000. Identification of a C-rich element as a novel cytoplasmic polyadenylation element in Xenopus embryos. Mech. Dev. 93: 117–125.
   PubMedGoogle Scholar
• Parsley, T. B., J. S. Towner, L. B. Blyn, E. Ehrenfeld, and B. L. Semler. 1997. Poly (rC) binding protein 2 forms a ternary complex with the 5′-terminal sequences of poliovirus RNA and the viral 3CD proteinase. RNA 3: 1124–1134.
   PubMed Web of Science ®Google Scholar
• Paulding, W. R., and M. F. Czyzyk-Krzeska. 1999. Regulation of tyrosine hydroxylase mRNA stability by protein-binding, pyrimidine-rich sequence in the 3′-untranslated region. J. Biol. Chem. 274: 2532–2538.
   PubMed Web of Science ®Google Scholar
• Perrotti, D., V. Cesi, R. Trotta, C. Guerzoni, G. Santilli, K. Campbell, A. Iervolino, F. Condorelli, C. Gambacorti-Passerini, M. A. Caligiuri, and B. Calabretta. 2002. BCR-ABL suppresses C/EBPalpha expression through inhibitory action of hnRNP E2. Nat. Genet. 30: 48–58.
   PubMed Web of Science ®Google Scholar
• Phillips, J., and J. H. Eberwine. 1996. Antisense RNA amplification: a linear amplification method for analyzing the mRNA population from single living cells. Methods 10: 283–288.
   PubMedGoogle Scholar
• Radomska, H. S., C. S. Huettner, P. Zhang, T. Cheng, D. T. Scadden, and D. G. Tenen. 1998. CCAAT/enhancer binding protein α is a regulatory switch sufficient for induction of granulocytic development from bipotential myeloid progenitors. Mol. Cell. Biol. 18: 4301–4314.
   PubMed Web of Science ®Google Scholar
• Scully, K. M., E. M. Jacobson, K. Jepsen, V. Lunyak, H. Viadiu, C. Carriere, D. W. Rose, F. Hooshmand, A. K. Aggarwal, and M. G. Rosenfeld. 2000. Allosteric effects of Pit-1 DNA sites on long-term repression in cell type specification. Science 290: 1127–1131.
   PubMed Web of Science ®Google Scholar
• Sleat, D. E., R. J. Donnelly, H. Lackland, C. G. Liu, I. Sohar, R. K. Pullarkat, and P. Lobel. 1997. Association of mutations in a lysosomal protein with classical late-infantile neuronal ceroid lipofuscinosis. Science 277: 1802–1805.
   PubMed Web of Science ®Google Scholar
• Spangberg, K., and S. Schwartz. 1999. Poly(C)-binding protein interacts with the hepatitis C virus 5′ untranslated region. J. Gen. Virol. 80: 1371–1376.
   PubMed Web of Science ®Google Scholar
• Stefanovic, B., C. Hellerbrand, M. Holcik, M. Briendl, S. A. Liebhaber, and D. A. Brenner. 1997. Posttranscriptional regulation of collagen α1(I) mRNA in hepatic stellate cells. Mol. Cell. Biol. 17: 5201–5209.
   PubMed Web of Science ®Google Scholar
• Tenenbaum, S. A., P. J. Lager, C. C. Carson, and J. D. Keene. 2002. Ribonomics: identifying mRNA subsets in mRNP complexes using antibodies to RNA-binding proteins and genomic arrays. Methods 26: 191–198.
   PubMed Web of Science ®Google Scholar
• Tomilin, A., A. Remenyi, K. Lins, H. Bak, S. Leidel, G. Vriend, M. Wilmanns, and H. R. Scholer. 2000. Synergism with the coactivator OBF-1 (OCA-B, BOB-1) is mediated by a specific POU dimer configuration. Cell 103: 853–864.
   PubMed Web of Science ®Google Scholar
• Tommerup, N., and H. Leffers. 1996. Assignment of human KH-box-containing genes by in situ hybridization: HNRNPK maps to 9q21.32-q21.33, PCBP1 to 2p12-p13, and PCBP2 to 12q13.12-q13.13, distal to FRA12A. Genomics 32: 297–298.
   PubMedGoogle Scholar
• Trifillis, P., N. Day, and M. Kiledjian. 1999. Finding the right RNA: identification of cellular mRNA substrates for RNA-binding proteins. RNA 5: 1071–1082.
   PubMedGoogle Scholar
• Waggoner, S., and P. Sarnow. 1998. Viral ribonucleoprotein complex formation and nucleolar-cytoplasmic relocalization of nucleolin in poliovirus-infected cells. J. Virol. 72: 6699–6709.
   PubMed Web of Science ®Google Scholar
• Walter, B. L., J. H. C. Nguyen, E. Ehrenfeld, and B. Semler. 1999. Differential utilization of poly(rC) binding protein 2 in translation directed by picornavirus IRES elements. RNA 5: 1570–1585.
   PubMedGoogle Scholar
• Wang, X., M. Kiledjian, I. M. Weiss, and S. A. Liebhaber. 1995. Detection and characterization of a 3′ untranslated region ribonucleoprotein complex associated with human α-globin mRNA stability. Mol. Cell. Biol. 15: 1769–1777.
   PubMedGoogle Scholar
• Weiss, I. M., and S. A. Liebhaber. 1995. Erythroid cell-specific mRNA stability elements in the α2-globin 3′ nontranslated region. Mol. Cell. Biol. 15: 2457–2465.
   PubMed Web of Science ®Google Scholar
• Xiao, X., Y. S. Tang, J. Y. Mackins, X. L. Sun, H. N. Jayaram, D. K. Hansen, and A. C. Antony. 2001. Isolation and characterization of a folate receptor mRNA-binding trans-factor from human placenta. Evidence favoring identity with heterogeneous nuclear ribonucleoprotein E1. J. Biol. Chem. 276: 41510–41517.
   PubMed Web of Science ®Google Scholar
• Yeap, B. B., D. C. Voon, J. P. Vivian, R. K. McCulloch, A. M. Thomson, K. M. Giles, M. F. Czyzyk-Krzeska, H. Fuurneaux, M. C. J. Wilce, J. A. Wilce, and P. J. Leedman. 2002. Novel binding of HuR and poly(C)-binding protein to a conserved UC-rich motif within the 3′-untranslated region of the androgen receptor messenger RNA. J. Biol. Chem. 277: 27183–27192.
   PubMed Web of Science ®Google Scholar