Advanced search
Publication Cover
Virulence Volume 3, 2012 - Issue 5
Submit an article Journal homepage
524
Views
6
CrossRef citations to date
0
Altmetric
Protocol

Applying modularity analysis of PPI networks to sequenced organisms

Xia Wang Beijing Institute of Biotechnology; Beijing, China
,
Xianwen Ren Beijing Institute of Biotechnology; Beijing, China
,
Beiping Li Beijing Institute of Biotechnology; Beijing, China
,
Junjie Yue Beijing Institute of Biotechnology; Beijing, ChinaCorrespondence[email protected] [email protected]
&
Long Liang Beijing Institute of Biotechnology; Beijing, ChinaCorrespondence[email protected] [email protected]
Pages 459-463 | Received 08 May 2012, Accepted 12 Jun 2012, Published online: 15 Aug 2012

References

  • Ravasz E, Somera AL, Mongru DA, Oltvai ZN, Barabási AL. Hierarchical organization of modularity in metabolic networks. Science 2002; 297:1551 - 5; http://dx.doi.org/10.1126/science.1073374; PMID: 12202830
  • Brohée S, van Helden J. Evaluation of clustering algorithms for protein-protein interaction networks. BMC Bioinformatics 2006; 7:488; http://dx.doi.org/10.1186/1471-2105-7-488; PMID: 17087821
  • Wang X, Yue J, Ren X, Wang Y, Tan M, Li B, et al. Modularity analysis based on predicted protein-protein interactions provides new insights into pathogenicity and cellular process of Escherichia coli O157:H7. Theor Biol Med Model 2011; 8:47; http://dx.doi.org/10.1186/1742-4682-8-47; PMID: 22188601
  • Hayashi T, Makino K, Ohnishi M, Kurokawa K, Ishii K, Yokoyama K, et al. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res 2001; 8:11 - 22; http://dx.doi.org/10.1093/dnares/8.1.11; PMID: 11258796
  • Deng M, Mehta S, Sun F, Chen T. Inferring domain-domain interactions from protein-protein interactions. Genome Res 2002; 12:1540 - 8; http://dx.doi.org/10.1101/gr.153002; PMID: 12368246
  • Huang CB, Morcos F, Kanaan SP, Wuchty S, Chen DZ, Izaguirre JA. Predicting protein-protein interactions from protein domains using a set cover approach. IEEE/ACM Trans Comput Biol Bioinform 2007; 4:78 - 87; http://dx.doi.org/10.1109/TCBB.2007.1001; PMID: 17277415
  • Gavin AC, Aloy P, Grandi P, Krause R, Boesche M, Marzioch M, et al. Proteome survey reveals modularity of the yeast cell machinery. Nature 2006; 440:631 - 6; http://dx.doi.org/10.1038/nature04532; PMID: 16429126
  • Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A, et al. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 2006; 440:637 - 43; http://dx.doi.org/10.1038/nature04670; PMID: 16554755
  • Yook SH, Oltvai ZN, Barabási AL. Functional and topological characterization of protein interaction networks. Proteomics 2004; 4:928 - 42; http://dx.doi.org/10.1002/pmic.200300636; PMID: 15048975
  • Li D, Li J, Ouyang S, Wang J, Wu S, Wan P, et al. Protein interaction networks of Saccharomyces cerevisiae, Caenorhabditis elegans and Drosophila melanogaster: large-scale organization and robustness. Proteomics 2006; 6:456 - 61; http://dx.doi.org/10.1002/pmic.200500228; PMID: 16317777

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Order Reprints Request Corporate Permissions

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

Request Academic Permissions

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.