Gut Microbes, Volume 13, Issue 1 (2021)

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Gut Microbes, Volume 13, Issue 1 (2021)

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Research Paper

Article
Antihypertensive effects of exercise involve reshaping of gut microbiota and improvement of gut-brain axis in spontaneously hypertensive rat
Wen-Jie Xia, Meng-Lu Xu, Xiao-Jing Yu, Meng-Meng Du, Xu-Hui Li, Tao Yang, Lu Li, Ying Li, Kai B. Kang, Qing Su, Jia-Xi Xu, Xiao-Lian Shi, Xiao-Min Wang, Hong-Bao Li & Yu-Ming Kang
Pages: 1-24
Published online: 31 Dec 2020
AbstractforAntihypertensive effects of exercise involve reshaping of gut microbiota and improvement of gut-brain axis in spontaneously hypertensive rat | Full Text | References | PDF (23.6 MB) | EPUB | Supplemental
  • 11155 Views
  • 47 CrossRef citations
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Open Access

Brief Report

Brief Report
Changes in IgA-targeted microbiota following fecal transplantation for recurrent Clostridioides difficile infection
Kelsey E Huus, Marcin Frankowski, Maja Pučić-Baković, Frano Vučković, Gordan Lauc, Benjamin H Mullish, Julian R Marchesi, Tanya M Monaghan, Dina Kao & B. Brett Finlay
Article: 1862027
Published online: 31 Dec 2020
AbstractforChanges in IgA-targeted microbiota following fecal transplantation for recurrent Clostridioides difficile infection | Full Text | References | PDF (3.3 MB) | EPUB | Supplemental
  • 4808 Views
  • 10 CrossRef citations
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Open Access
Brief Report
Immunostimulatory membrane proteins potentiate H. pylori-induced carcinogenesis by enabling CagA translocation
Matthew G. Varga, Cecily R. Wood, Julia Butt, Mackenzie E. Ryan, Wei-Cheng You, Kaifeng Pan, Tim Waterboer, Meira Epplein & Carrie L. Shaffer
Article: 1862613
Published online: 31 Dec 2020
AbstractforImmunostimulatory membrane proteins potentiate H. pylori-induced carcinogenesis by enabling CagA translocation | Full Text | References | PDF (3.9 MB) | EPUB
  • 3236 Views
  • 3 CrossRef citations
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Open Access

Research Paper

Article
The prebiotic effects of omega-3 fatty acid supplementation: A six-week randomised intervention trial
Amrita Vijay, Stuart Astbury, Caroline Le Roy, Tim D Spector & Ana M Valdes
Article: 1863133
Published online: 31 Dec 2020
AbstractforThe prebiotic effects of omega-3 fatty acid supplementation: A six-week randomised intervention trial | Full Text | References | PDF (1.4 MB) | EPUB | Supplemental
  • 11700 Views
  • 42 CrossRef citations
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Open Access

Review

Review
The Sporobiota of the Human Gut
Muireann Egan, Eugene Dempsey, C. Anthony Ryan, R. Paul Ross & Catherine Stanton
Article: 1863134
Published online: 07 Jan 2021
AbstractforThe Sporobiota of the Human Gut | Full Text | References | PDF (1.1 MB) | EPUB
  • 5804 Views
  • 23 CrossRef citations
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Open Access
Review
Serrated neoplasia in the colorectum: gut microbiota and molecular pathways
Xing Kang, Ru Zhang, Thomas Ny Kwong, Rashid Ns Lui, William Kk Wu, Joseph Jy Sung, Jun Yu & Sunny H Wong
Article: 1863135
Published online: 31 Dec 2020
AbstractforSerrated neoplasia in the colorectum: gut microbiota and molecular pathways | Full Text | References | PDF (3.3 MB) | EPUB
  • 6073 Views
  • 11 CrossRef citations
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Open Access

Brief Report

Brief Report
Immuno-modulatory effect of probiotic E. coli Nissle 1917 in polarized human colonic cells against Campylobacter jejuni infection
Yosra A. Helmy, Issmat I. Kassem & Gireesh Rajashekara
Article: 1857514
Published online: 31 Dec 2020
AbstractforImmuno-modulatory effect of probiotic E. coli Nissle 1917 in polarized human colonic cells against Campylobacter jejuni infection | Full Text | References | PDF (2.9 MB) | EPUB | Supplemental
  • 3922 Views
  • 14 CrossRef citations
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Open Access

Research Paper

Article
Exposure to soil environments during earlier life stages is distinguishable in the gut microbiome of adult mice
Wenjun Liu, Zheng Sun, Chen Ma, Jiachao Zhang, ChenChen Ma, Yinqi Zhao, Hong Wei, Shi Huang & Heping Zhang
Article: 1830699
Published online: 31 Dec 2020
AbstractforExposure to soil environments during earlier life stages is distinguishable in the gut microbiome of adult mice | Full Text | References | PDF (3.1 MB) | EPUB | Supplemental
  • 4705 Views
  • 3 CrossRef citations
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Open Access
Article
Enteral broad-spectrum antibiotics antagonize the effect of fecal microbiota transplantation in preterm pigs
Anders Brunse, Simone Margaard Offersen, Josefine Juliane Mosegaard, Ling Deng, Peter Damborg, Dennis Sandris Nielsen, Per Torp Sangild, Thomas Thymann & Duc Ninh Nguyen
Article: 1849997
Published online: 31 Dec 2020
AbstractforEnteral broad-spectrum antibiotics antagonize the effect of fecal microbiota transplantation in preterm pigs | Full Text | References | PDF (5.2 MB) | EPUB | Supplemental
  • 3886 Views
  • 11 CrossRef citations
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Open Access
Article
The gut bacterium Extibacter muris produces secondary bile acids and influences liver physiology in gnotobiotic mice
Theresa Streidl, Isabel Karkossa, Rafael R. Segura Muñoz, Claudia Eberl, Alex Zaufel, Johannes Plagge, Robert Schmaltz, Kristin Schubert, Marijana Basic, Kai Markus Schneider, Mamdouh Afify, Christian Trautwein, René Tolba, Bärbel Stecher, Heidi L. Doden, Jason M. Ridlon, Josef Ecker, Tarek Moustafa, Martin von Bergen, Amanda E. Ramer-Tait & Thomas Clavel
Article: 1854008
Published online: 31 Dec 2020
AbstractforThe gut bacterium Extibacter muris produces secondary bile acids and influences liver physiology in gnotobiotic mice | Full Text | References | PDF (4.3 MB) | EPUB | Supplemental
  • 6264 Views
  • 32 CrossRef citations
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Open Access
Article
Gene variations in Autism Spectrum Disorder are associated with alternation of gut microbiota, metabolites and cytokines
Zhi Liu, Xuhua Mao, Zhou Dan, Yang Pei, Rui Xu, Mengchen Guo, Kangjian Liu, Faming Zhang, Junyu Chen, Chuan Su, Yaoyao Zhuang, Junming Tang, Yankai Xia, Lianhong Qin, Zhibin Hu & Xingyin Liu
Article: 1854967
Published online: 08 Jan 2021
AbstractforGene variations in Autism Spectrum Disorder are associated with alternation of gut microbiota, metabolites and cytokines | Full Text | References | PDF (6.5 MB) | EPUB | Supplemental
  • 8196 Views
  • 17 CrossRef citations
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Open Access
Article
Maternal consumption of artificially sweetened beverages during pregnancy is associated with infant gut microbiota and metabolic modifications and increased infant body mass index
Isabelle Laforest-Lapointe, Allan B. Becker, Piushkumar J. Mandhane, Stuart E. Turvey, Theo J. Moraes, Malcolm R. Sears, Padmaja Subbarao, Laura K. Sycuro, Meghan B. Azad & Marie-Claire Arrieta
Article: 1857513
Published online: 31 Dec 2020
AbstractforMaternal consumption of artificially sweetened beverages during pregnancy is associated with infant gut microbiota and metabolic modifications and increased infant body mass index | Full Text | References | PDF (3.1 MB) | EPUB | Supplemental
  • 9715 Views
  • 30 CrossRef citations
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Open Access

Commentary and Views

Article Commentary
Microbiome distinctions between the CRC carcinogenic pathways
Lauren DeDecker, Bretton Coppedge, Julio Avelar-Barragan, William Karnes & Katrine Whiteson
Pages: 1-12
Published online: 15 Jan 2021
AbstractforMicrobiome distinctions between the CRC carcinogenic pathways | Full Text | References | PDF (2.5 MB) | EPUB
  • 8001 Views
  • 30 CrossRef citations
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Open Access

Research Paper

Article
Investigation of a monoclonal antibody against enterotoxigenic Escherichia coli, expressed as secretory IgA1 and IgA2 in plants
Audrey Y-H Teh, Lisa Cavacini, Yue Hu, Ozan S. Kumru, Jian Xiong, David T. Bolick, Sangeeta B. Joshi, Clemens Grünwald-Gruber, Friedrich Altmann, Mark Klempner, Richard L. Guerrant, David B. Volkin, Yang Wang & Julian K-C. Ma
Article: 1859813
Published online: 13 Jan 2021
AbstractforInvestigation of a monoclonal antibody against enterotoxigenic Escherichia coli, expressed as secretory IgA1 and IgA2 in plants | Full Text | References | PDF (1.9 MB) | EPUB | Supplemental
  • 2873 Views
  • 9 CrossRef citations
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Open Access
Article
Noninvasive monitoring of fibre fermentation in healthy volunteers by analyzing breath volatile metabolites: lessons from the FiberTAG intervention study
Audrey M. Neyrinck, Julie Rodriguez, Zhengxiao Zhang, Benjamin Seethaler, Florence Mailleux, Joeri Vercammen, Laure B. Bindels, Patrice D. Cani, Julie-Anne Nazare, Véronique Maquet, Martine Laville, Stephan C. Bischoff, Jens Walter & Nathalie M. Delzenne
Article: 1862028
Published online: 18 Jan 2021
AbstractforNoninvasive monitoring of fibre fermentation in healthy volunteers by analyzing breath volatile metabolites: lessons from the FiberTAG intervention study | Full Text | References | PDF (2.8 MB) | EPUB | Supplemental
  • 3052 Views
  • 7 CrossRef citations
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Open Access
Article
Enriched metabolites that potentially promote age-associated diseases in subjects with an elderly-type gut microbiota
Shin Yoshimoto, Eri Mitsuyama, Keisuke Yoshida, Toshitaka Odamaki & Jin-zhong Xiao
Article: 1865705
Published online: 11 Jan 2021
AbstractforEnriched metabolites that potentially promote age-associated diseases in subjects with an elderly-type gut microbiota | Full Text | References | PDF (1.1 MB) | EPUB | Supplemental
  • 5365 Views
  • 15 CrossRef citations
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Open Access
Article
Bacteroides uniformis combined with fiber amplifies metabolic and immune benefits in obese mice
Inmaculada López-Almela, Marina Romaní-Pérez, Clara Bullich-Vilarrubias, Alfonso Benítez-Páez, Eva M. Gómez Del Pulgar, Rubén Francés, Gerhard Liebisch & Yolanda Sanz
Pages: 1-20
Published online: 26 Jan 2021
AbstractforBacteroides uniformis combined with fiber amplifies metabolic and immune benefits in obese mice | Full Text | References | PDF (7.8 MB) | EPUB | Supplemental
  • 7434 Views
  • 63 CrossRef citations
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Open Access
Article
Microbial and metabolic features associated with outcome of infliximab therapy in pediatric Crohn’s disease
Yizhong Wang, Xuefeng Gao, Xinyue Zhang, Fangfei Xiao, Hui Hu, Xiaolu Li, Fang Dong, Mingming Sun, Yongmei Xiao, Ting Ge, Dan Li, Guangjun Yu, Zhanju Liu & Ting Zhang
Article: 1865708
Published online: 11 Jan 2021
AbstractforMicrobial and metabolic features associated with outcome of infliximab therapy in pediatric Crohn’s disease | Full Text | References | PDF (9.7 MB) | EPUB | Supplemental
  • 7199 Views
  • 31 CrossRef citations
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Open Access

Review

Review Article
Carbohydrates great and small, from dietary fiber to sialic acids: How glycans influence the gut microbiome and affect human health
Joanna K Coker, Oriane Moyne, Dmitry A. Rodionov & Karsten Zengler
Article: 1869502
Published online: 21 Feb 2021
AbstractforCarbohydrates great and small, from dietary fiber to sialic acids: How glycans influence the gut microbiome and affect human health | Full Text | References | PDF (4.7 MB) | EPUB
  • 8014 Views
  • 26 CrossRef citations
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Open Access

Research Paper

Article
Characterization of fructooligosaccharide metabolism and fructooligosaccharide-degrading enzymes in human commensal butyrate producers
Hiroki Tanno, Tadashi Fujii, Katsuaki Hirano, Shintaro Maeno, Takashi Tonozuka, Mitsuo Sakamoto, Moriya Ohkuma, Takumi Tochio & Akihito Endo
Article: 1869503
Published online: 13 Jan 2021
AbstractforCharacterization of fructooligosaccharide metabolism and fructooligosaccharide-degrading enzymes in human commensal butyrate producers | Full Text | References | PDF (1.6 MB) | EPUB | Supplemental
  • 5336 Views
  • 12 CrossRef citations
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Open Access

Review

Review
Gut microbiota: impacts on gastrointestinal cancer immunotherapy
Harry Cheuk Hay Lau, Joseph Jao-Yiu Sung & Jun Yu
Article: 1869504
Published online: 12 Jan 2021
AbstractforGut microbiota: impacts on gastrointestinal cancer immunotherapy | Full Text | References | PDF (1.6 MB) | EPUB | Supplemental
  • 6796 Views
  • 25 CrossRef citations
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Open Access

Brief Report

Brief Report
Establishing a novel colorectal cancer predictive model based on unique gut microbial single nucleotide variant markers
Chenchen Ma, Kaining Chen, Yuanyuan Wang, Chaoping Cen, Qixiao Zhai & Jiachao Zhang
Article: 1869505
Published online: 11 Jan 2021
AbstractforEstablishing a novel colorectal cancer predictive model based on unique gut microbial single nucleotide variant markers | Full Text | References | PDF (1.1 MB) | EPUB | Supplemental
  • 4680 Views
  • 12 CrossRef citations
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Open Access

Research Paper

Article
Salmonella effector SpvB aggravates dysregulation of systemic iron metabolism via modulating the hepcidin−ferroportin axis
Qifeng Deng, Sidi Yang, Lanqing Sun, Kedi Dong, Yuanyuan Li, Shuyan Wu & Rui Huang
Article: 1849996
Published online: 21 Jan 2021
AbstractforSalmonella effector SpvB aggravates dysregulation of systemic iron metabolism via modulating the hepcidin−ferroportin axis | Full Text | References | PDF (4.2 MB) | EPUB | Supplemental
  • 2975 Views
  • 9 CrossRef citations
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Open Access
Article
Dietary betaine prevents obesity through gut microbiota-drived microRNA-378a family
Jingjing Du, Peiwen Zhang, Jiang Luo, Linyuan Shen, Shunhua Zhang, Hao Gu, Jin He, Linghui Wang, Xue Zhao, Mailing Gan, Liu Yang, Lili Niu, Ye Zhao, Qianzi Tang, Guoqing Tang, Dongmei Jiang, Yanzhi Jiang, Mingzhou Li, Anan Jiang, Long Jin, Jideng Ma, Surong Shuai, Lin Bai, Jinyong Wang, Bo Zeng, De Wu, Xuewei Li & Li Zhu
Article: 1862612
Published online: 08 Feb 2021
AbstractforDietary betaine prevents obesity through gut microbiota-drived microRNA-378a family | Full Text | References | PDF (12.8 MB) | EPUB | Supplemental
  • 10045 Views
  • 33 CrossRef citations
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Open Access

Brief Report

Brief Report
Role of gut microbiota in regulating gastrointestinal dysfunction and motor symptoms in a mouse model of Parkinson’s disease
Yogesh Bhattarai, Jie Si, Meng Pu, Owen A. Ross, Pamela J. McLean, Lisa Till, William Moor, Madhusudan Grover, Karunya K. Kandimalla, Kara G. Margolis, Gianrico Farrugia & Purna C. Kashyap
Article: 1866974
Published online: 18 Jan 2021
AbstractforRole of gut microbiota in regulating gastrointestinal dysfunction and motor symptoms in a mouse model of Parkinson’s disease | Full Text | References | PDF (1.2 MB) | EPUB
  • 7629 Views
  • 38 CrossRef citations
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Open Access

Research Paper

Article
Compensatory intestinal immunoglobulin response after vancomycin treatment in humans
Torsten P. M. Scheithauer, Guido J. Bakker, Maaike Winkelmeijer, Mark Davids, Max Nieuwdorp, Daniël H. van Raalte & Hilde Herrema
Article: 1875109
Published online: 21 Jan 2021
AbstractforCompensatory intestinal immunoglobulin response after vancomycin treatment in humans | Full Text | References | PDF (661.2 KB) | EPUB | Supplemental
  • 2625 Views
  • 6 CrossRef citations
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Open Access

Review

Review
Gut Bacteroides species in health and disease
Hassan Zafar & Milton H. Saier Jr
Article: 1848158
Published online: 03 Feb 2021
AbstractforGut Bacteroides species in health and disease | Full Text | References | PDF (3.7 MB) | EPUB
  • 26636 Views
  • 173 CrossRef citations
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Open Access

Research Paper

Article
Involvement of the microbiota-gut-brain axis in chronic restraint stress: disturbances of the kynurenine metabolic pathway in both the gut and brain
Yuanyuan Deng, Manfei Zhou, Junfeng Wang, Jiaxi Yao, Jing Yu, Wenwei Liu, Linlin Wu, Jun Wang & Rong Gao
Article: 1869501
Published online: 03 Feb 2021
AbstractforInvolvement of the microbiota-gut-brain axis in chronic restraint stress: disturbances of the kynurenine metabolic pathway in both the gut and brain | Full Text | References | PDF (2.2 MB) | EPUB | Supplemental
  • 13381 Views
  • 70 CrossRef citations
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Open Access

Review

Review
Harnessing machine learning for development of microbiome therapeutics
Laura E. McCoubrey, Moe Elbadawi, Mine Orlu, Simon Gaisford & Abdul W. Basit
Article: 1872323
Published online: 30 Jan 2021
AbstractforHarnessing machine learning for development of microbiome therapeutics | Full Text | References | PDF (2.6 MB) | EPUB
  • 9845 Views
  • 36 CrossRef citations
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Open Access

Brief Report

Brief Report
Microbiota-derived short-chain fatty acids do not interfere with SARS-CoV-2 infection of human colonic samples
Lívia Bitencourt Pascoal, Patrícia Brito Rodrigues, Lívia Moreira Genaro, Arilson Bernardo dos Santos Pereira Gomes, Daniel Augusto Toledo-Teixeira, Pierina Lorencini Parise, Karina Bispo-Dos-Santos, Camila Lopes Simeoni, Paula Veri Guimarães, Lucas Ildefonso Buscaratti, João Gabriel De Angeli Elston, Henrique Marques-Souza, Daniel Martins-de-Souza, Maria De Lourdes Setsuko Ayrizono, Lício Augusto Velloso, José Luiz Proenca-Modena, Pedro Manoel Mendes Moraes-Vieira, Marcelo Alves Silva Mori, Alessandro Santos Farias, Marco Aurélio Ramirez Vinolo & Raquel Franco Leal
Pages: 1-9
Published online: 08 Feb 2021
AbstractforMicrobiota-derived short-chain fatty acids do not interfere with SARS-CoV-2 infection of human colonic samples | Full Text | References | PDF (3.8 MB) | EPUB
  • 7885 Views
  • 31 CrossRef citations
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Open Access

Research Paper

Article
Spatial analysis of gut microbiome reveals a distinct ecological niche associated with the mucus layer
Kellyanne Duncan, Kelly Carey-Ewend & Shipra Vaishnava
Article: 1874815
Published online: 11 Feb 2021
AbstractforSpatial analysis of gut microbiome reveals a distinct ecological niche associated with the mucus layer | Full Text | References | PDF (12.4 MB) | EPUB | Supplemental
  • 6521 Views
  • 19 CrossRef citations
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Open Access

Review

Review
Iron homeostasis in host and gut bacteria – a complex interrelationship
Yohannes Seyoum, Kaleab Baye & Christèle Humblot
Article: 1874855
Published online: 04 Feb 2021
AbstractforIron homeostasis in host and gut bacteria – a complex interrelationship | Full Text | References | PDF (6.7 MB) | EPUB
  • 10683 Views
  • 39 CrossRef citations
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Open Access

Research Paper

Article
Roux-en-Y gastric bypass surgery in Zucker rats induces bacterial and systemic metabolic changes independent of caloric restriction-induced weight loss
Florian Seyfried, Jutarop Phetcharaburanin, Maria Glymenaki, Arno Nordbeck, Mohammed Hankir, Jeremy K Nicholson, Elaine Holmes, Julian R. Marchesi & Jia V. Li
Article: 1875108
Published online: 04 Feb 2021
AbstractforRoux-en-Y gastric bypass surgery in Zucker rats induces bacterial and systemic metabolic changes independent of caloric restriction-induced weight loss | Full Text | References | PDF (8.3 MB) | EPUB | Supplemental
  • 3404 Views
  • 16 CrossRef citations
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Open Access
Article
Effects of colon-targeted vitamins on the composition and metabolic activity of the human gut microbiome– a pilot study
Van T. Pham, Sophie Fehlbaum, Nicole Seifert, Nathalie Richard, Maaike J. Bruins, Wilbert Sybesma, Ateequr Rehman & Robert E. Steinert
Article: 1875774
Published online: 21 Feb 2021
AbstractforEffects of colon-targeted vitamins on the composition and metabolic activity of the human gut microbiome– a pilot study | Full Text | References | PDF (2.5 MB) | EPUB | Supplemental
  • 11606 Views
  • 33 CrossRef citations
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Open Access

Review

Review
Blautia—a new functional genus with potential probiotic properties?
Xuemei Liu, Bingyong Mao, Jiayu Gu, Jiaying Wu, Shumao Cui, Gang Wang, Jianxin Zhao, Hao Zhang & Wei Chen
Article: 1875796
Published online: 01 Feb 2021
AbstractforBlautia—a new functional genus with potential probiotic properties? | Full Text | References | PDF (6.3 MB) | EPUB | Supplemental
  • 27158 Views
  • 286 CrossRef citations
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Open Access

Research Paper

Article
Early life environmental exposures have a minor impact on the gut ecosystem following a natural birth
Nishat Tasnim, Candice Quin, Sandeep Gill, Chuanbin Dai, Miranda Hart & Deanna L. Gibson
Article: 1875797
Published online: 02 Feb 2021
AbstractforEarly life environmental exposures have a minor impact on the gut ecosystem following a natural birth | Full Text | References | PDF (9.1 MB) | EPUB | Supplemental
  • 2398 Views
  • 6 CrossRef citations
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Open Access
Article
The rectal mucosal but not fecal microbiota detects subclinical ulcerative colitis
Yu-Fei Lin, Chang Mu Sung, Huei-Mien Ke, Chia-Jung Kuo, Wei-an Liu, Wen-Sy Tsai, Cheng-Yu Lin, Hao-Tsai Cheng, Meiyeh J Lu, Isheng. J. Tsai & Sen-Yung Hsieh
Article: 1832856
Published online: 01 Feb 2021
AbstractforThe rectal mucosal but not fecal microbiota detects subclinical ulcerative colitis | Full Text | References | PDF (1.9 MB) | EPUB | Supplemental
  • 4331 Views
  • 4 CrossRef citations
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Open Access
Article
B. adolescentis ameliorates chronic colitis by regulating Treg/Th2 response and gut microbiota remodeling
Lina Fan, Yadong Qi, Siwen Qu, Xueqin Chen, Aiqing Li, Maher Hendi, Chaochao Xu, Lan Wang, Tongyao Hou, Jianmin Si & Shujie Chen
Article: 1826746
Published online: 09 Feb 2021
AbstractforB. adolescentis ameliorates chronic colitis by regulating Treg/Th2 response and gut microbiota remodeling | Full Text | References | PDF (6.8 MB) | EPUB | Supplemental
  • 11099 Views
  • 55 CrossRef citations
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Open Access
Article
Elevated gut microbiome abundance of Christensenellaceae, Porphyromonadaceae and Rikenellaceae is associated with reduced visceral adipose tissue and healthier metabolic profile in Italian elderly
Teresa Tavella, Simone Rampelli, Giulia Guidarelli, Alberto Bazzocchi, Chiara Gasperini, Estelle Pujos-Guillot, Blandine Comte, Monica Barone, Elena Biagi, Marco Candela, Claudio Nicoletti, Fawzi Kadi, Giuseppe Battista, Stefano Salvioli, Paul W. O’Toole, Claudio Franceschi, Patrizia Brigidi, Silvia Turroni & Aurelia Santoro
Article: 1880221
Published online: 09 Feb 2021
AbstractforElevated gut microbiome abundance of Christensenellaceae, Porphyromonadaceae and Rikenellaceae is associated with reduced visceral adipose tissue and healthier metabolic profile in Italian elderly | Full Text | References | PDF (1.5 MB) | EPUB | Supplemental
  • 9019 Views
  • 77 CrossRef citations
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Open Access

Review

Review
Intestinal Inflammation as a Dysbiosis of Energy Procurement: New Insights into an Old Topic
J. Scott Lee, Ruth X. Wang, Erica E. Alexeev & Sean P. Colgan
Article: 1880241
Published online: 15 Feb 2021
AbstractforIntestinal Inflammation as a Dysbiosis of Energy Procurement: New Insights into an Old Topic | Full Text | References | PDF (1.5 MB) | EPUB
  • 3256 Views
  • 11 CrossRef citations
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Open Access

Research Paper

Article
Helicobacter hepaticus is required for immune targeting of bacterial heat shock protein 60 and fatal colitis in mice
Verena Friedrich, Ignasi Forné, Dana Matzek, Diana Ring, Bastian Popper, Lara Jochum, Stefanie Spriewald, Tobias Straub, Axel Imhof, Anne Krug, Bärbel Stecher & Thomas Brocker
Article: 1882928
Published online: 08 Feb 2021
AbstractforHelicobacter hepaticus is required for immune targeting of bacterial heat shock protein 60 and fatal colitis in mice | Full Text | References | PDF (2 MB) | EPUB | Supplemental
  • 2889 Views
  • 7 CrossRef citations
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Open Access
Article
YjbH mediates the oxidative stress response and infection by regulating SpxA1 and the phosphoenolpyruvate-carbohydrate phosphotransferase system (PTS) in Listeria monocytogenes
Changyong Cheng, Xiao Han, Jiali Xu, Jing Sun, Kang Li, Yue Han, Mianmian Chen & Houhui Song
Article: 1884517
Published online: 12 Feb 2021
AbstractforYjbH mediates the oxidative stress response and infection by regulating SpxA1 and the phosphoenolpyruvate-carbohydrate phosphotransferase system (PTS) in Listeria monocytogenes | Full Text | References | PDF (6.4 MB) | EPUB | Supplemental
  • 2790 Views
  • 1 CrossRef citations
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Open Access
Article
Ethnic variability associating gut and oral microbiome with obesity in children
Baskar Balakrishnan, Vaithinathan Selvaraju, Jun Chen, Priscilla Ayine, Lu Yang, Jeganathan Ramesh Babu, Thangiah Geetha & Veena Taneja
Article: 1882926
Published online: 17 Feb 2021
AbstractforEthnic variability associating gut and oral microbiome with obesity in children | Full Text | References | PDF (2.7 MB) | EPUB | Supplemental
  • 3987 Views
  • 14 CrossRef citations
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Open Access

Review

Review
The contribution of gut bacterial metabolites in the human immune signaling pathway of non-communicable diseases
F. Hosseinkhani, A. Heinken, I. Thiele, P. W. Lindenburg, A. C. Harms & T. Hankemeier
Article: 1882927
Published online: 16 Feb 2021
AbstractforThe contribution of gut bacterial metabolites in the human immune signaling pathway of non-communicable diseases | Full Text | References | PDF (1.3 MB) | EPUB
  • 16292 Views
  • 61 CrossRef citations
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Open Access

Research Paper

Article
Human galectin-1 and galectin-3 promote Tropheryma whipplei infection
Diyoly Ayona, Sandra Madariaga Zarza, Ludovic Landemarre, Benoît Roubinet, Philippe Decloquement, Didier Raoult, Pierre-Edouard Fournier & Benoit Desnues
Article: 1884515
Published online: 12 Feb 2021
AbstractforHuman galectin-1 and galectin-3 promote Tropheryma whipplei infection | Full Text | References | PDF (1.2 MB) | EPUB | Supplemental
  • 2543 Views
  • 5 CrossRef citations
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Open Access
Article
Akkermansia muciniphila and environmental enrichment reverse cognitive impairment associated with high-fat high-cholesterol consumption in rats
Sara G. Higarza, Silvia Arboleya, Jorge L. Arias, Miguel Gueimonde & Natalia Arias
Article: 1880240
Published online: 08 Mar 2021
AbstractforAkkermansia muciniphila and environmental enrichment reverse cognitive impairment associated with high-fat high-cholesterol consumption in rats | Full Text | References | PDF (1.9 MB) | EPUB | Supplemental
  • 6115 Views
  • 33 CrossRef citations
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Open Access

Review

Review
The prognostic value of toxin B and binary toxin in Clostridioides difficile infection
Salvador López-Cárdenas, Eva Torres-Martos, Juan Mora-Delgado, Juan Manuel Sánchez-Calvo, Marta Santos-Peña, Ángel Zapata López, María Dolores López-Prieto, Salvador Pérez-Cortés & Juan Carlos Alados
Article: 1884516
Published online: 04 Mar 2021
AbstractforThe prognostic value of toxin B and binary toxin in Clostridioides difficile infection | Full Text | References | PDF (471.4 KB) | EPUB
  • 2447 Views
  • 6 CrossRef citations
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Open Access

Research Paper

Article
Dietary vitamin K is remodeled by gut microbiota and influences community composition
Jessie L. Ellis, J. Philip Karl, Angela M. Oliverio, Xueyan Fu, Jason W. Soares, Benjamin E. Wolfe, Christopher J. Hernandez, Joel B. Mason & Sarah L. Booth
Article: 1887721
Published online: 02 Mar 2021
AbstractforDietary vitamin K is remodeled by gut microbiota and influences community composition | Full Text | References | PDF (1.4 MB) | EPUB | Supplemental
  • 8206 Views
  • 37 CrossRef citations
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Open Access

Review

Review
Modulation of the PI3K/Akt/mTOR signaling pathway by probiotics as a fruitful target for orchestrating the immune response
Amir Hossein Mohseni, Vincenzo Casolaro, Luis G. Bermúdez-Humarán, Hossein Keyvani & Sedigheh Taghinezhad-S
Article: 1886844
Published online: 21 Feb 2021
AbstractforModulation of the PI3K/Akt/mTOR signaling pathway by probiotics as a fruitful target for orchestrating the immune response | Full Text | References | PDF (839.2 KB) | EPUB
  • 7059 Views
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Research Paper

Article
The gut virome in Irritable Bowel Syndrome differs from that of controls
S. Coughlan, A. Das, E. O’Herlihy, F. Shanahan, P.W. O’Toole & I.B. Jeffery
Article: 1887719
Published online: 19 Feb 2021
AbstractforThe gut virome in Irritable Bowel Syndrome differs from that of controls | Full Text | References | PDF (1.5 MB) | EPUB | Supplemental
  • 4796 Views
  • 25 CrossRef citations
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Article
Gut microbiota shape the inflammatory response in mice with an epithelial defect
Ran Wang, Md Moniruzzaman, Kuan Yau Wong, Percival Wiid, Alexa Harding, Rabina Giri, Wendy (Hui) Tong, Jackie Creagh, Jakob Begun, Michael A. McGuckin & Sumaira Z. Hasnain
Article: 1887720
Published online: 28 Feb 2021
AbstractforGut microbiota shape the inflammatory response in mice with an epithelial defect | Full Text | References | PDF (3.4 MB) | EPUB | Supplemental
  • 5381 Views
  • 5 CrossRef citations
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Article
Links between gut microbiome composition and fatty liver disease in a large population sample
Matti O. Ruuskanen, Fredrik Åberg, Ville Männistö, Aki S. Havulinna, Guillaume Méric, Yang Liu, Rohit Loomba, Yoshiki Vázquez-Baeza, Anupriya Tripathi, Liisa M. Valsta, Michael Inouye, Pekka Jousilahti, Veikko Salomaa, Mohit Jain, Rob Knight, Leo Lahti & Teemu J. Niiranen
Article: 1888673
Published online: 02 Mar 2021
AbstractforLinks between gut microbiome composition and fatty liver disease in a large population sample | Full Text | References | PDF (1.1 MB) | EPUB | Supplemental
  • 7440 Views
  • 26 CrossRef citations
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Article
Association between antibiotics and gut microbiome dysbiosis in children: systematic review and meta-analysis
Lucy McDonnell, Alexander Gilkes, Mark Ashworth, Victoria Rowland, Timothy Hugh Harries, David Armstrong & Patrick White
Article: 1870402
Published online: 02 Mar 2021
AbstractforAssociation between antibiotics and gut microbiome dysbiosis in children: systematic review and meta-analysis | Full Text | References | PDF (1.3 MB) | EPUB | Supplemental
  • 14474 Views
  • 50 CrossRef citations
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Article
Intestinal and systemic inflammation induced by symptomatic and asymptomatic enterotoxigenic E. coli infection and impact on intestinal colonization and ETEC specific immune responses in an experimental human challenge model
Jessica Brubaker, Xueyan Zhang, A. Louis Bourgeois, Clayton Harro, David A Sack & Subhra Chakraborty
Article: 1891852
Published online: 27 Feb 2021
AbstractforIntestinal and systemic inflammation induced by symptomatic and asymptomatic enterotoxigenic E. coli infection and impact on intestinal colonization and ETEC specific immune responses in an experimental human challenge model | Full Text | References | PDF (981.2 KB) | EPUB | Supplemental
  • 3290 Views
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Article
The gut microbiota during the progression of atherosclerosis in the perimenopausal period shows specific compositional changes and significant correlations with circulating lipid metabolites
Qinghai Meng, Menghua Ma, Weiwei Zhang, Yunhui Bi, Peng Cheng, Xichao Yu, Yu Fu, Ying Chao, Tingting Ji, Jun Li, Qi Chen, Qichun Zhang, Yu Li, Jinjun Shan & Huimin Bian
Article: 1880220
Published online: 11 Mar 2021
AbstractforThe gut microbiota during the progression of atherosclerosis in the perimenopausal period shows specific compositional changes and significant correlations with circulating lipid metabolites | Full Text | References | PDF (11.1 MB) | EPUB | Supplemental
  • 4079 Views
  • 13 CrossRef citations
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Article
Integrated gut virome and bacteriome dynamics in COVID-19 patients
Jiabao Cao, Cheng Wang, Yuqing Zhang, Guanglin Lei, Kun Xu, Na Zhao, Jingjing Lu, Fanping Meng, Linxiang Yu, Jin Yan, Changqing Bai, Shaogeng Zhang, Ning Zhang, Yuhuan Gong, Yuhai Bi, Yi Shi, Zhu Chen, Lianpan Dai, Jun Wang & Penghui Yang
Article: 1887722
Published online: 08 Mar 2021
AbstractforIntegrated gut virome and bacteriome dynamics in COVID-19 patients | Full Text | References | PDF (5 MB) | EPUB | Supplemental
  • 7660 Views
  • 56 CrossRef citations
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Article
Mucin degrader Akkermansia muciniphila accelerates intestinal stem cell-mediated epithelial development
Seungil Kim, Yun-Chan Shin, Tae-Young Kim, Yeji Kim, Yong-Soo Lee, Su-Hyun Lee, Mi-Na Kim, Eunju O, Kwang Soon Kim & Mi-Na Kweon
Article: 1892441
Published online: 08 Mar 2021
AbstractforMucin degrader Akkermansia muciniphila accelerates intestinal stem cell-mediated epithelial development | Full Text | References | PDF (5.4 MB) | EPUB | Supplemental
  • 10642 Views
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Article
SARS-CoV-2 infection in nonhuman primates alters the composition and functional activity of the gut microbiota
Harry Sokol, Vanessa Contreras, Pauline Maisonnasse, Aurore Desmons, Benoit Delache, Valentin Sencio, Arnaud Machelart, Angela Brisebarre, Lydie Humbert, Lucie Deryuter, Emilie Gauliard, Severine Heumel, Dominique Rainteau, Nathalie Dereuddre-Bosquet, Elisabeth Menu, Raphael Ho Tsong Fang, Antonin Lamaziere, Loic Brot, Celine Wahl, Cyriane Oeuvray, Nathalie Rolhion, Sylvie Van Der Werf, Stéphanie Ferreira, Roger Le Grand & François Trottein
Article: 1893113
Published online: 08 Mar 2021
AbstractforSARS-CoV-2 infection in nonhuman primates alters the composition and functional activity of the gut microbiota | Full Text | References | PDF (1.6 MB) | EPUB | Supplemental
  • 6242 Views
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Review

Review
The impact of the gut microbiota on the reproductive and metabolic endocrine system
Xinyu Qi, Chuyu Yun, Yanli Pang & Jie Qiao
Article: 1894070
Published online: 15 Mar 2021
AbstractforThe impact of the gut microbiota on the reproductive and metabolic endocrine system | Full Text | References | PDF (3.2 MB) | EPUB
  • 20594 Views
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Research Paper

Article
Propionate catabolism by CD-associated adherent-invasive E. coli counteracts its anti-inflammatory effect
Allison Agus, Damien Richard, Tiphanie Faïs, Emilie Vazeille, Mélissa Chervy, Virginie Bonnin, Guillaume Dalmasso, Jérémy Denizot, Elisabeth Billard, Richard Bonnet, Anthony Buisson, Nicolas Barnich & Julien Delmas
Article: 1839318
Published online: 26 Mar 2021
AbstractforPropionate catabolism by CD-associated adherent-invasive E. coli counteracts its anti-inflammatory effect | Full Text | References | PDF (2.2 MB) | EPUB | Supplemental
  • 3677 Views
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Article
Persistence and dynamics of fluorescent Lactobacillus plantarum in the healthy versus inflamed gut
Sophie Salomé-Desnoulez, Sabine Poiret, Benoit Foligné, Ghaffar Muharram, Véronique Peucelle, Frank Lafont & Catherine Daniel
Article: 1897374
Published online: 28 Mar 2021
AbstractforPersistence and dynamics of fluorescent Lactobacillus plantarum in the healthy versus inflamed gut | Full Text | References | PDF (3.2 MB) | EPUB | Supplemental
  • 2703 Views
  • 6 CrossRef citations
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Article
Running after ghosts: are dead bacteria the dark matter of the human gut microbiota?
Sara Bellali, Jean-Christophe Lagier, Matthieu Million, Hussein Anani, Gabriel Haddad, Rania Francis, Edmond Kuete Yimagou, Saber Khelaifia, Anthony Levasseur, Didier Raoult & Jacques Bou Khalil
Article: 1897208
Published online: 23 Mar 2021
AbstractforRunning after ghosts: are dead bacteria the dark matter of the human gut microbiota? | Full Text | References | PDF (2.1 MB) | EPUB | Supplemental
  • 4294 Views
  • 8 CrossRef citations
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Article
The high prevalence of Clostridioides difficile among nursing home elders associates with a dysbiotic microbiome
John P. Haran, Doyle V. Ward, Shakti K. Bhattarai, Ethan Loew, Protiva Dutta, Amanda Higgins, Beth A. McCormick & Vanni Bucci
Article: 1897209
Published online: 25 Mar 2021
AbstractforThe high prevalence of Clostridioides difficile among nursing home elders associates with a dysbiotic microbiome | Full Text | References | PDF (1.6 MB) | EPUB | Supplemental
  • 2988 Views
  • 6 CrossRef citations
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Article
Limosilactobacillus fermentum JL-3 isolated from “Jiangshui” ameliorates hyperuricemia by degrading uric acid
Ying Wu, Ze Ye, Pengya Feng, Rong Li, Xiao Chen, Xiaozhu Tian, Rong Han, Apurva Kakade, Pu Liu & Xiangkai Li
Article: 1897211
Published online: 25 Mar 2021
AbstractforLimosilactobacillus fermentum JL-3 isolated from “Jiangshui” ameliorates hyperuricemia by degrading uric acid | Full Text | References | PDF (2.9 MB) | EPUB | Supplemental
  • 20032 Views
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Review

Review
The role of short-chain fatty acids in the interplay between gut microbiota and diet in cardio-metabolic health
Ana Nogal, Ana M. Valdes & Cristina Menni
Article: 1897212
Published online: 25 Mar 2021
AbstractforThe role of short-chain fatty acids in the interplay between gut microbiota and diet in cardio-metabolic health | Full Text | References | PDF (1.7 MB) | EPUB
  • 17155 Views
  • 112 CrossRef citations
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Research Paper

Article
Gut microbial communities from patients with anorexia nervosa do not influence body weight in recipient germ-free mice
Elaine M. Glenny, Farnaz Fouladi, Stephanie A. Thomas, Emily C. Bulik-Sullivan, Quyen Tang, Zorka Djukic, Yesel S. Trillo-Ordonez, Anthony A. Fodor, Lisa M. Tarantino, Cynthia M. Bulik & Ian M. Carroll
Article: 1897216
Published online: 26 Mar 2021
AbstractforGut microbial communities from patients with anorexia nervosa do not influence body weight in recipient germ-free mice | Full Text | References | PDF (3.9 MB) | EPUB | Supplemental
  • 2834 Views
  • 11 CrossRef citations
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Article
Gut bacteriophage dynamics during fecal microbial transplantation in subjects with metabolic syndrome
Pilar Manrique, Yifan Zhu, John van der Oost, Hilde Herrema, Max Nieuwdorp, Willem M. de Vos & Mark Young
Article: 1897217
Published online: 01 Apr 2021
AbstractforGut bacteriophage dynamics during fecal microbial transplantation in subjects with metabolic syndrome | Full Text | References | PDF (2.6 MB) | EPUB | Supplemental
  • 4467 Views
  • 13 CrossRef citations
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Review

Article
Understanding the relationship between norovirus diversity and immunity
Lauren A. Ford-Siltz, Kentaro Tohma & Gabriel I. Parra
Article: 1900994
Published online: 30 Mar 2021
AbstractforUnderstanding the relationship between norovirus diversity and immunity | Full Text | References | PDF (1,000.9 KB) | EPUB
  • 5088 Views
  • 13 CrossRef citations
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Addendum

Article
Probiotics reduce self-reported symptoms of upper respiratory tract infection in overweight and obese adults: should we be considering probiotics during viral pandemics?
Benjamin H. Mullish, Julian R. Marchesi, Julie A.K. McDonald, Daniel A. Pass, Giulia Masetti, Daryn R. Michael, Sue Plummer, Alison A. Jack, Thomas S. Davies, Timothy R. Hughes & Duolao Wang
Article: 1900997
Published online: 25 Mar 2021
AbstractforProbiotics reduce self-reported symptoms of upper respiratory tract infection in overweight and obese adults: should we be considering probiotics during viral pandemics? | Full Text | References | PDF (543.5 KB) | EPUB | Supplemental
  • 8281 Views
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Research Paper

Article
Extracellular vesicles of Fusobacterium nucleatum compromise intestinal barrier through targeting RIPK1-mediated cell death pathway
Le Liu, Liping Liang, Chenghai Yang, Youlian Zhou & Ye Chen
Article: 1902718
Published online: 26 Mar 2021
AbstractforExtracellular vesicles of Fusobacterium nucleatum compromise intestinal barrier through targeting RIPK1-mediated cell death pathway | Full Text | References | PDF (5.9 MB) | EPUB | Supplemental
  • 6434 Views
  • 28 CrossRef citations
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Article
Expansion and persistence of antibiotic-specific resistance genes following antibiotic treatment
Kang Kang, Lejla Imamovic, Maria-Anna Misiakou, Maria Bornakke Sørensen, Yoshitaro Heshiki, Yueqiong Ni, Tingting Zheng, Jun Li, Mostafa M. H. Ellabaan, Marta Colomer-Lluch, Anne A. Rode, Peter Bytzer, Gianni Panagiotou & Morten O.A. Sommer
Article: 1900995
Published online: 28 Mar 2021
AbstractforExpansion and persistence of antibiotic-specific resistance genes following antibiotic treatment | Full Text | References | PDF (1.8 MB) | EPUB | Supplemental
  • 4728 Views
  • 17 CrossRef citations
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Article
The gut microbiota metabolite capsiate promotes Gpx4 expression by activating TRPV1 to inhibit intestinal ischemia reperfusion-induced ferroptosis
Fan Deng, Bing-Cheng Zhao, Xiao Yang, Ze-Bin Lin, Qi-Shun Sun, Yi-Fan Wang, Zheng-Zheng Yan, Wei-Feng Liu, Cai Li, Jing-Juan Hu & Ke-Xuan Liu
Article: 1902719
Published online: 28 Mar 2021
AbstractforThe gut microbiota metabolite capsiate promotes Gpx4 expression by activating TRPV1 to inhibit intestinal ischemia reperfusion-induced ferroptosis | Full Text | References | PDF (7.1 MB) | EPUB | Supplemental
  • 12234 Views
  • 56 CrossRef citations
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Article
The intestinal microbiota and metabolites in patients with anorexia nervosa
Petra Prochazkova, Radka Roubalova, Jiri Dvorak, Jakub Kreisinger, Martin Hill, Helena Tlaskalova-Hogenova, Petra Tomasova, Helena Pelantova, Martina Cermakova, Marek Kuzma, Josef Bulant, Martin Bilej, Kvido Smitka, Alena Lambertova, Petra Holanova & Hana Papezova
Article: 1902771
Published online: 28 Mar 2021
AbstractforThe intestinal microbiota and metabolites in patients with anorexia nervosa | Full Text | References | PDF (3.2 MB) | EPUB | Supplemental
  • 7722 Views
  • 31 CrossRef citations
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Article
Translational activity is uncoupled from nucleic acid content in bacterial cells of the human gut microbiota
Mariia Taguer, B. Jesse Shapiro & Corinne F. Maurice
Article: 1903289
Published online: 28 Mar 2021
AbstractforTranslational activity is uncoupled from nucleic acid content in bacterial cells of the human gut microbiota | Full Text | References | PDF (1.3 MB) | EPUB | Supplemental
  • 3537 Views
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Review

Review
A systematic review of the factors influencing microbial colonization of the preterm infant gut
Miriam Aguilar-Lopez, Andrew M. Dinsmoor, Thao T. B. Ho & Sharon M. Donovan
Article: 1884514
Published online: 04 Apr 2021
AbstractforA systematic review of the factors influencing microbial colonization of the preterm infant gut | Full Text | References | PDF (1.4 MB) | EPUB | Supplemental
  • 4978 Views
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Research Paper

Article
Intestinal Cetobacterium and acetate modify glucose homeostasis via parasympathetic activation in zebrafish
Anran Wang, Zhen Zhang, Qianwen Ding, Yalin Yang, Jérôme Bindelle, Chao Ran & Zhigang Zhou
Pages: 1-15
Published online: 12 Apr 2021
AbstractforIntestinal Cetobacterium and acetate modify glucose homeostasis via parasympathetic activation in zebrafish | Full Text | References | PDF (2.2 MB) | EPUB | Supplemental
  • 6454 Views
  • 98 CrossRef citations
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Article
The Impact of Migration on the Gut Metagenome of South Asian Canadians
Julia K. Copeland, Gary Chao, Shelley Vanderhout, Erica Acton, Pauline W. Wang, Eric I. Benchimol, Ahmed El-Sohemy, Ken Croitoru, Jennifer L. Gommerman, David S. Guttman & the GEMINI Research Team
Article: 1902705
Published online: 02 Apr 2021
AbstractforThe Impact of Migration on the Gut Metagenome of South Asian Canadians | Full Text | References | PDF (2.6 MB) | EPUB | Supplemental
  • 3333 Views
  • 9 CrossRef citations
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Article
Cohousing-mediated microbiota transfer from milk bioactive components-dosed mice ameliorate colitis by remodeling colonic mucus barrier and lamina propria macrophages
Cong Liu, Shimeng Huang, Zhenhua Wu, Tiantian Li, Na Li, Bing Zhang, Dandan Han, Shilan Wang, Jiangchao Zhao & Junjun Wang
Article: 1903826
Published online: 31 Mar 2021
AbstractforCohousing-mediated microbiota transfer from milk bioactive components-dosed mice ameliorate colitis by remodeling colonic mucus barrier and lamina propria macrophages | Full Text | References | PDF (7.8 MB) | EPUB | Supplemental
  • 6235 Views
  • 13 CrossRef citations
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Review

Review
Maternal exposures and the infant gut microbiome: a systematic review with meta-analysis
Allison Grech, Clare E Collins, Andrew Holmes, Ravin Lal, Kerith Duncanson, Rachael Taylor & Adrienne Gordon
Article: 1897210
Published online: 12 May 2021
AbstractforMaternal exposures and the infant gut microbiome: a systematic review with meta-analysis | Full Text | References | PDF (1.9 MB) | EPUB | Supplemental
  • 12892 Views
  • 41 CrossRef citations
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Research Paper

Article
Completion of the gut microbial epi-bile acid pathway
Heidi L. Doden, Patricia G. Wolf, H. Rex Gaskins, Karthik Anantharaman, João M. P. Alves & Jason M. Ridlon
Article: 1907271
Published online: 03 May 2021
AbstractforCompletion of the gut microbial epi-bile acid pathway | Full Text | References | PDF (2 MB) | EPUB | Supplemental
  • 5492 Views
  • 22 CrossRef citations
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Review

Review
Butyrate-producing human gut symbiont, Clostridium butyricum, and its role in health and disease
Magdalena K. Stoeva, Jeewon Garcia-So, Nicholas Justice, Julia Myers, Surabhi Tyagi, Madeleine Nemchek, Paul J. McMurdie, Orville Kolterman & John Eid
Article: 1907272
Published online: 20 Apr 2021
AbstractforButyrate-producing human gut symbiont, Clostridium butyricum, and its role in health and disease | Full Text | References | PDF (2.1 MB) | EPUB
  • 17910 Views
  • 82 CrossRef citations
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Research Paper

Article
Development of gut microbiota and bifidobacterial communities of neonates in the first 6 weeks and their inheritance from mother
Bo Yang, Mengfan Ding, Yingqi Chen, Fengzhen Han, Chunyan Yang, Jianxin Zhao, Patrice Malard, Catherine Stanton, R. Paul Ross, Hao Zhang & Wei Chen
Article: 1908100
Published online: 13 Apr 2021
AbstractforDevelopment of gut microbiota and bifidobacterial communities of neonates in the first 6 weeks and their inheritance from mother | Full Text | References | PDF (1.4 MB) | EPUB | Supplemental
  • 3679 Views
  • 6 CrossRef citations
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Review

Review
Role of IgA in the early-life establishment of the gut microbiota and immunity: Implications for constructing a healthy start
Jielong Guo, Chenglong Ren, Xue Han, Weidong Huang, Yilin You & Jicheng Zhan
Article: 1908101
Published online: 18 Apr 2021
AbstractforRole of IgA in the early-life establishment of the gut microbiota and immunity: Implications for constructing a healthy start | Full Text | References | PDF (1.3 MB) | EPUB
  • 4824 Views
  • 13 CrossRef citations
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Review
The role of the human gut microbiota in colonization and infection with multidrug-resistant bacteria
Irene Wuethrich, Benedikt W. Pelzer, Yascha Khodamoradi & Maria J. G. T. Vehreschild
Article: 1911279
Published online: 18 Apr 2021
AbstractforThe role of the human gut microbiota in colonization and infection with multidrug-resistant bacteria | Full Text | References | PDF (751 KB) | EPUB
  • 4514 Views
  • 9 CrossRef citations
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Research Paper

Article
Intestinal microbiota drives cholestasis-induced specific hepatic gene expression patterns
Oriol Juanola, Mohsin Hassan, Pavitra Kumar, Bahtiyar Yilmaz, Irene Keller, Cédric Simillion, Cornelius Engelmann, Frank Tacke, Jean-François Dufour, Andrea De Gottardi & Sheida Moghadamrad
Article: 1911534
Published online: 13 Apr 2021
AbstractforIntestinal microbiota drives cholestasis-induced specific hepatic gene expression patterns | Full Text | References | PDF (4.6 MB) | EPUB | Supplemental
  • 4113 Views
  • 11 CrossRef citations
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Article
Association of Pre-diagnostic Antibody Responses to Escherichia coli and Bacteroides fragilis Toxin Proteins with Colorectal Cancer in a European Cohort
Julia Butt, Mazda Jenab, Jill Werner, Veronika Fedirko, Elisabete Weiderpass, Christina C. Dahm, Anne Tjønneland, Anja Olsen, Marie-Christine Boutron-Ruault, Joseph A. Rothwell, Gianluca Severi, Rudolf Kaaks, Renée Turzanski-Fortner, Krasimira Aleksandrova, Matthias Schulze, Domenico Palli, Valeria Pala, Salvatore Panico, Rosario Tumino, Carlotta Sacerdote, Bas Bueno-de-Mesquita, Carla H. Van Gils, Inger Torhild Gram, Marko Lukic, Núria Sala, María José Sánchez Pérez, Eva Ardanaz, María-Dolores Chirlaque, Richard Palmquist, Thyra Löwenmark, Ruth C Travis, Alicia Heath, Amanda J Cross, Heinz Freisling, Semi Zouiouich, Elom Aglago, Tim Waterboer & David J. Hughes
Article: 1903825
Published online: 20 Apr 2021
AbstractforAssociation of Pre-diagnostic Antibody Responses to Escherichia coli and Bacteroides fragilis Toxin Proteins with Colorectal Cancer in a European Cohort | Full Text | References | PDF (730.2 KB) | EPUB | Supplemental
  • 3418 Views
  • 13 CrossRef citations
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Review

Review
The interplay between Helicobacter pylori and gastrointestinal microbiota
Chieh-Chang Chen, Jyh-Ming Liou, Yi-Chia Lee, Tzu-Chan Hong, Emad M El-Omar & Ming-Shiang Wu
Article: 1909459
Published online: 03 May 2021
AbstractforThe interplay between Helicobacter pylori and gastrointestinal microbiota | Full Text | References | PDF (1.5 MB) | EPUB | Supplemental
  • 10332 Views
  • 43 CrossRef citations
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Review
From taxonomy to metabolic output: what factors define gut microbiome health?
Tomasz Wilmanski, Noa Rappaport, Christian Diener, Sean M. Gibbons & Nathan D. Price
Article: 1907270
Published online: 23 Apr 2021
AbstractforFrom taxonomy to metabolic output: what factors define gut microbiome health? | Full Text | References | PDF (4.8 MB) | EPUB
  • 7234 Views
  • 11 CrossRef citations
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Research Paper

Article
Metagenomic analysis of mother-infant gut microbiome reveals global distinct and shared microbial signatures
Shaopu Wang, Shuqin Zeng, Muireann Egan, Paul Cherry, Conall Strain, Emilene Morais, Patrick Boyaval, C. Anthony Ryan, Eugene Dempsey, R. Paul Ross & Catherine Stanton
Article: 1911571
Published online: 07 May 2021
AbstractforMetagenomic analysis of mother-infant gut microbiome reveals global distinct and shared microbial signatures | Full Text | References | PDF (5.6 MB) | EPUB | Supplemental
  • 6316 Views
  • 10 CrossRef citations
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Review

Review
At the heart of microbial conversations: endocannabinoids and the microbiome in cardiometabolic risk
Ramsha Nabihah Khan, Kristal Maner-Smith, Joshua A. Owens, Maria Estefania Barbian, Rheinallt M. Jones & Crystal R. Naudin
Article: 1911572
Published online: 25 Apr 2021
AbstractforAt the heart of microbial conversations: endocannabinoids and the microbiome in cardiometabolic risk | Full Text | References | PDF (1.4 MB) | EPUB
  • 3412 Views
  • 8 CrossRef citations
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Commentary and Views

Article Commentary
COVID-19 and the neonatal microbiome: will the pandemic cost infants their microbes?
Joann Romano-Keeler, Jilei Zhang & Jun Sun
Article: 1912562
Published online: 07 May 2021
AbstractforCOVID-19 and the neonatal microbiome: will the pandemic cost infants their microbes? | Full Text | References | PDF (751.5 KB) | EPUB
  • 4410 Views
  • 12 CrossRef citations
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Research Paper

Article
Infant gut microbiota modulation by human milk disaccharides in humanized microbiome mice
Antonio Rubio-Del-Campo, Roberto Gozalbo-Rovira, Eva M. Moya-Gonzálvez, Juan Alberola, Jesús Rodríguez-Díaz & María J. Yebra
Article: 1914377
Published online: 03 May 2021
AbstractforInfant gut microbiota modulation by human milk disaccharides in humanized microbiome mice | Full Text | References | PDF (4 MB) | EPUB | Supplemental
  • 3602 Views
  • 10 CrossRef citations
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Review

Review
Alcohol as friend or foe in autoimmune diseases: a role for gut microbiome?
Blaine Caslin, Kailey Mohler, Shreya Thiagarajan & Esther Melamed
Article: 1916278
Published online: 05 Jul 2021
AbstractforAlcohol as friend or foe in autoimmune diseases: a role for gut microbiome? | Full Text | References | PDF (1.1 MB) | EPUB
  • 8003 Views
  • 12 CrossRef citations
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Review
Healthy Intestinal Function Relies on Coordinated Enteric Nervous System, Immune System, and Epithelium Responses
Fatima B. Saldana-Morales, Dasom V. Kim, Ming-Ting Tsai & Gretchen E. Diehl
Article: 1916376
Published online: 30 Apr 2021
AbstractforHealthy Intestinal Function Relies on Coordinated Enteric Nervous System, Immune System, and Epithelium Responses | Full Text | References | PDF (1.6 MB) | EPUB
  • 3343 Views
  • 7 CrossRef citations
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Research Paper

Article
Bioactive small molecules produced by the human gut microbiome modulate Vibrio cholerae sessile and planktonic lifestyles
Heidi Pauer, Felipe Lopes Teixeira, Avery V. Robinson, Thiago E. Parente, Marília A. F. De Melo, Leandro A. Lobo, Regina M. C. P. Domingues, Emma Allen-Vercoe, Rosana B. R. Ferreira & Luis Caetano M. Antunes
Article: 1918993
Published online: 19 May 2021
AbstractforBioactive small molecules produced by the human gut microbiome modulate Vibrio cholerae sessile and planktonic lifestyles | Full Text | References | PDF (1.9 MB) | EPUB | Supplemental
  • 2843 Views
  • 3 CrossRef citations
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Research Paper/Report

Article
A synthetic consortium of 100 gut commensals modulates the composition and function in a colon model of the microbiome of elderly subjects
Marta Perez, Alexandra Ntemiri, Huizi Tan, Hugh M. B. Harris, Henrik M. Roager, Céline Ribière & Paul W. O’Toole
Article: 1919464
Published online: 16 May 2021
AbstractforA synthetic consortium of 100 gut commensals modulates the composition and function in a colon model of the microbiome of elderly subjects | Full Text | References | PDF (1.4 MB) | EPUB | Supplemental
  • 4544 Views
  • 4 CrossRef citations
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Open Access

Brief Report

Brief Report
Cruciferous vegetables (Brassica oleracea) confer cytoprotective effects in Drosophila intestines
James T. Lyles, Liping Luo, Ken Liu, Dean P. Jones, Rheinallt M. Jones & Cassandra L. Quave
Article: 1921926
Published online: 08 May 2021
AbstractforCruciferous vegetables (Brassica oleracea) confer cytoprotective effects in Drosophila intestines | Full Text | References | PDF (2.1 MB) | EPUB
  • 2400 Views
  • 3 CrossRef citations
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Research Paper

Article
Helicobacter pylori PqqE is a new virulence factor that cleaves junctional adhesion molecule A and disrupts gastric epithelial integrity
Miguel S. Marques, Ana C. Costa, Hugo Osório, Marta L. Pinto, Sandra Relvas, Mário Dinis-Ribeiro, Fátima Carneiro, Marina Leite & Ceu Figueiredo
Article: 1921928
Published online: 10 May 2021
AbstractforHelicobacter pylori PqqE is a new virulence factor that cleaves junctional adhesion molecule A and disrupts gastric epithelial integrity | Full Text | References | PDF (3.6 MB) | EPUB | Supplemental
  • 2947 Views
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Article
ZFP90 drives the initiation of colitis-associated colorectal cancer via a microbiota-dependent strategy
Ji-Xuan Han, Zhi-Hang Tao, Yun Qian, Chen-Yang Yu, Jialu Li, Zi-Ran Kang, Shiyuan Lu, Yuanhong Xie, Jie Hong, Haoyan Chen, Ying-Xuan Chen & Jing-Yuan Fang
Article: 1917269
Published online: 05 May 2021
AbstractforZFP90 drives the initiation of colitis-associated colorectal cancer via a microbiota-dependent strategy | Full Text | References | PDF (4.1 MB) | EPUB | Supplemental
  • 3886 Views
  • 5 CrossRef citations
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Article
Bifidobacterium dentium-derived y-glutamylcysteine suppresses ER-mediated goblet cell stress and reduces TNBS-driven colonic inflammation
Melinda A. Engevik, Beatrice Herrmann, Wenly Ruan, Amy C. Engevik, Kristen A. Engevik, Faith Ihekweazu, Zhongcheng Shi, Berkley Luck, Alexandra L. Chang-Graham, Magdalena Esparza, Susan Venable, Thomas D. Horvath, Sigmund J. Haidacher, Kathleen M. Hoch, Anthony M. Haag, Deborah A. Schady, Joseph M. Hyser, Jennifer K. Spinler & James Versalovic
Article: 1902717
Published online: 14 May 2021
AbstractforBifidobacterium dentium-derived y-glutamylcysteine suppresses ER-mediated goblet cell stress and reduces TNBS-driven colonic inflammation | Full Text | References | PDF (5 MB) | EPUB | Supplemental
  • 6230 Views
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Article
The microbiome of deep-sea fish reveals new microbial species and a sparsity of antibiotic resistance genes
Fergus W. J. Collins, Calum J. Walsh, Beatriz Gomez-Sala, Elena Guijarro-García, David Stokes, Klara B. Jakobsdóttir, Kristján Kristjánsson, Finlay Burns, Paul D. Cotter, Mary C. Rea, Colin Hill & R. Paul Ross
Article: 1921924
Published online: 10 May 2021
AbstractforThe microbiome of deep-sea fish reveals new microbial species and a sparsity of antibiotic resistance genes | Full Text | References | PDF (2.4 MB) | EPUB | Supplemental
  • 4655 Views
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Article
Fecal microbiota composition associates with the capacity of human peripheral blood monocytes to differentiate into immunogenic dendritic cells in vitro
Dušan Radojević, Sergej Tomić, Dušan Mihajlović, Maja Tolinački, Bojan Pavlović, Dragana Vučević, Svetlana Bojić, Nataša Golić, Miodrag Čolić & Jelena Đokić
Article: 1921927
Published online: 10 May 2021
AbstractforFecal microbiota composition associates with the capacity of human peripheral blood monocytes to differentiate into immunogenic dendritic cells in vitro | Full Text | References | PDF (2.5 MB) | EPUB | Supplemental
  • 3151 Views
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Review

Review
Parabacteroides distasonis: intriguing aerotolerant gut anaerobe with emerging antimicrobial resistance and pathogenic and probiotic roles in human health
Jessica C. Ezeji, Daven K. Sarikonda, Austin Hopperton, Hailey L. Erkkila, Daniel E. Cohen, Sandra P. Martinez, Fabio Cominelli, Tomomi Kuwahara, Armand E. K. Dichosa, Caryn E. Good, Michael R. Jacobs, Mikhail Khoretonenko, Alida Veloo & Alexander Rodriguez-Palacios
Article: 1922241
Published online: 01 Jul 2021
AbstractforParabacteroides distasonis: intriguing aerotolerant gut anaerobe with emerging antimicrobial resistance and pathogenic and probiotic roles in human health | Full Text | References | PDF (2 MB) | EPUB
  • 11245 Views
  • 60 CrossRef citations
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Research Paper

Article
Integration of constraint-based modeling with fecal metabolomics reveals large deleterious effects of Fusobacterium spp. on community butyrate production
Johannes Hertel, Almut Heinken, Filippo Martinelli & Ines Thiele
Article: 1915673
Published online: 31 May 2021
AbstractforIntegration of constraint-based modeling with fecal metabolomics reveals large deleterious effects of Fusobacterium spp. on community butyrate production | Full Text | References | PDF (3.7 MB) | EPUB | Supplemental
  • 3754 Views
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Brief Report

Brief Report
Mapping the colorectal tumor microbiota
CL Murphy, M Barrett, P Pellanda, S Killeen, M McCourt, E Andrews, M O’ Riordain, F Shanahan & Pw O’Toole
Article: 1920657
Published online: 25 May 2021
AbstractforMapping the colorectal tumor microbiota | Full Text | References | PDF (658.7 KB) | EPUB | Supplemental
  • 2735 Views
  • 4 CrossRef citations
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Research Paper

Article
Gut microbiota as prognosis markers for patients with HBV-related acute-on-chronic liver failure
Ke Wang, Zhao Zhang, Zhi-Shuo Mo, Xiao-Hua Yang, Bing-Liang Lin, Liang Peng, Yang Xu, Chun-Yan Lei, Xiao-Dong Zhuang, Ling Lu, Rui-Fu Yang, Tao Chen & Zhi-Liang Gao
Article: 1921925
Published online: 19 May 2021
AbstractforGut microbiota as prognosis markers for patients with HBV-related acute-on-chronic liver failure | Full Text | References | PDF (2.4 MB) | EPUB | Supplemental
  • 4158 Views
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Review

Review
Impact of type 1 diabetes on the composition and functional potential of gut microbiome in children and adolescents: possible mechanisms, current knowledge, and challenges
Pari Mokhtari, Julie Metos & Pon Velayutham Anandh  Babu
Article: 1926841
Published online: 08 Jun 2021
AbstractforImpact of type 1 diabetes on the composition and functional potential of gut microbiome in children and adolescents: possible mechanisms, current knowledge, and challenges | Full Text | References | PDF (674.3 KB) | EPUB
  • 4392 Views
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Research Paper

Article
Gut Akkermansia muciniphila ameliorates metabolic dysfunction-associated fatty liver disease by regulating the metabolism of L-aspartate via gut-liver axis
Yong Rao, Zhiqi Kuang, Chan Li, Shiyao Guo, Yaohao Xu, Dandan Zhao, Yutao Hu, Bingbing Song, Zhi Jiang, Zhenhuang Ge, Xiyuan Liu, Chengdao Li, Shuobin Chen, Jiming Ye, Zhishu Huang & Yongjun Lu
Article: 1927633
Published online: 25 May 2021
AbstractforGut Akkermansia muciniphila ameliorates metabolic dysfunction-associated fatty liver disease by regulating the metabolism of L-aspartate via gut-liver axis | Full Text | References | PDF (2.9 MB) | EPUB | Supplemental
  • 10817 Views
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Article
Influence of pig farming on human Gut Microbiota: role of airborne microbial communities
Julia Moor, Tsering Wüthrich, Suzanne Aebi, Nadezda Mostacci, Gudrun Overesch, Anne Oppliger & Markus Hilty
Article: 1927634
Published online: 01 Jun 2021
AbstractforInfluence of pig farming on human Gut Microbiota: role of airborne microbial communities | Full Text | References | PDF (2 MB) | EPUB | Supplemental
  • 3230 Views
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Article
Engraftment of strictly anaerobic oxygen-sensitive bacteria in irritable bowel syndrome patients following fecal microbiota transplantation does not improve symptoms
Patrick Denis Browne, Frederik Cold, Andreas Munk Petersen, Sofie Ingdam Halkjær, Alice Højer Christensen, Stig Günther & Lars Hestbjerg Hansen
Article: 1927635
Published online: 01 Jun 2021
AbstractforEngraftment of strictly anaerobic oxygen-sensitive bacteria in irritable bowel syndrome patients following fecal microbiota transplantation does not improve symptoms | Full Text | References | PDF (2.3 MB) | EPUB | Supplemental
  • 2420 Views
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Article
The gut microbiome of COVID-19 recovered patients returns to uninfected status in a minority-dominated United States cohort
Rachel C. Newsome, Josee Gauthier, Maria C. Hernandez, George E. Abraham, Tanya O. Robinson, Haley B. Williams, Meredith Sloan, Anna Owings, Hannah Laird, Taylor Christian, Yilianys Pride, Kenneth J. Wilson, Mohammad Hasan, Adam Parker, Michal Senitko, Sarah C. Glover, Raad Z. Gharaibeh & Christian Jobin
Article: 1926840
Published online: 08 Jun 2021
AbstractforThe gut microbiome of COVID-19 recovered patients returns to uninfected status in a minority-dominated United States cohort | Full Text | References | PDF (1.3 MB) | EPUB | Supplemental
  • 3950 Views
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Review

Review
Resistant starch, microbiome, and precision modulation
Peter A. Dobranowski & Alain Stintzi
Article: 1926842
Published online: 18 Jul 2021
AbstractforResistant starch, microbiome, and precision modulation | Full Text | References | PDF (1.1 MB) | EPUB | Supplemental
  • 6808 Views
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Research Paper

Article
Inter-kingdom relationships in Crohn’s disease explored using a multi-omics approach
Alessandra Frau, Umer Z. Ijaz, Rachael Slater, Daisy Jonkers, John Penders, Barry J. Campbell, John G. Kenny, Neil Hall, Luca Lenzi, Michael D. Burkitt, Marieke Pierik, Alistair C. Darby & Christopher S. J. Probert
Article: 1930871
Published online: 09 Jul 2021
AbstractforInter-kingdom relationships in Crohn’s disease explored using a multi-omics approach | Full Text | References | PDF (6.3 MB) | EPUB | Supplemental
  • 3574 Views
  • 10 CrossRef citations
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Article
Desulfovibrio vulgaris, a potent acetic acid-producing bacterium, attenuates nonalcoholic fatty liver disease in mice
Ying Hong, Lili Sheng, Jing Zhong, Xin Tao, Weize Zhu, Junli Ma, Juan Yan, Aihua Zhao, Xiaojiao Zheng, Gaosong Wu, Bingbing Li, Bangxing Han, Kan Ding, Ningning Zheng, Wei Jia & Houkai Li
Article: 1930874
Published online: 14 Jun 2021
AbstractforDesulfovibrio vulgaris, a potent acetic acid-producing bacterium, attenuates nonalcoholic fatty liver disease in mice | Full Text | References | PDF (3.5 MB) | EPUB | Supplemental
  • 12108 Views
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Review

Review
Studies of xenobiotic-induced gut microbiota dysbiosis: from correlation to mechanisms
Liang Chi, Pengcheng Tu, Hongyu Ru & Kun Lu
Article: 1921912
Published online: 27 Jul 2021
AbstractforStudies of xenobiotic-induced gut microbiota dysbiosis: from correlation to mechanisms | Full Text | References | PDF (2.3 MB) | EPUB
  • 3741 Views
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Research Paper

Article
A microbial signature following bariatric surgery is robustly consistent across multiple cohorts
Farnaz Fouladi, Ian M. Carroll, Thomas J. Sharpton, Emily Bulik-Sullivan, Leslie Heinberg, Kristine J. Steffen & Anthony A. Fodor
Article: 1930872
Published online: 23 Jun 2021
AbstractforA microbial signature following bariatric surgery is robustly consistent across multiple cohorts | Full Text | References | PDF (2 MB) | EPUB | Supplemental
  • 2718 Views
  • 7 CrossRef citations
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Article
Bacteroides-dominant gut microbiome of late infancy is associated with enhanced neurodevelopment
Sukhpreet K. Tamana, Hein M. Tun, Theodore Konya, Radha S. Chari, Catherine J. Field, David S. Guttman, Allan B. Becker, Theo J. Moraes, Stuart E. Turvey, Padmaja Subbarao, Malcolm R. Sears, Jacqueline Pei, James A. Scott, Piush J. Mandhane & Anita L. Kozyrskyj
Article: 1930875
Published online: 16 Jun 2021
AbstractforBacteroides-dominant gut microbiome of late infancy is associated with enhanced neurodevelopment | Full Text | References | PDF (4.2 MB) | EPUB | Supplemental
  • 12486 Views
  • 36 CrossRef citations
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Article
Integrating gut microbiome and host immune markers to understand the pathogenesis of Clostridioides difficile infection
Shanlin Ke, Nira R. Pollock, Xu-Wen Wang, Xinhua Chen, Kaitlyn Daugherty, Qianyun Lin, Hua Xu, Kevin W. Garey, Anne J. Gonzales-Luna, Ciarán P. Kelly & Yang-Yu Liu
Article: 1935186
Published online: 16 Jun 2021
AbstractforIntegrating gut microbiome and host immune markers to understand the pathogenesis of Clostridioides difficile infection | Full Text | References | PDF (4.3 MB) | EPUB | Supplemental
  • 3098 Views
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Brief Report

Brief Report
Effect of COVID-19 precautions on the gut microbiota and nosocomial infections
Armin Rashidi, Maryam Ebadi, Tauseef Ur Rehman, Heba Elhusseini, Harika Nalluri, Thomas Kaiser, Shernan G Holtan, Alexander Khoruts, Daniel J. Weisdorf & Christopher Staley
Article: 1936378
Published online: 16 Jun 2021
AbstractforEffect of COVID-19 precautions on the gut microbiota and nosocomial infections | Full Text | References | PDF (1.1 MB) | EPUB | Supplemental
  • 2958 Views
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Review

Review
Gut microbiome and its meta-omics perspectives: profound implications for cardiovascular diseases
Jing Xu & Yuejin Yang
Article: 1936379
Published online: 25 Jun 2021
AbstractforGut microbiome and its meta-omics perspectives: profound implications for cardiovascular diseases | Full Text | References | PDF (2.4 MB) | EPUB
  • 4173 Views
  • 13 CrossRef citations
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Review
Methane positive small intestinal bacterial overgrowth in inflammatory bowel disease and irritable bowel syndrome: A systematic review and meta-analysis
Arjun Gandhi, Ayesha Shah, Michael P. Jones, Natasha Koloski, Nicholas J. Talley, Mark Morrison & Gerald Holtmann
Article: 1933313
Published online: 30 Jun 2021
AbstractforMethane positive small intestinal bacterial overgrowth in inflammatory bowel disease and irritable bowel syndrome: A systematic review and meta-analysis | Full Text | References | PDF (818.1 KB) | EPUB | Supplemental
  • 6989 Views
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Review
The Interface of Vibrio cholerae and the Gut Microbiome
Jennifer Y. Cho, Rui Liu, John C. Macbeth & Ansel Hsiao
Article: 1937015
Published online: 28 Jun 2021
AbstractforThe Interface of Vibrio cholerae and the Gut Microbiome | Full Text | References | PDF (1.5 MB) | EPUB
  • 5018 Views
  • 18 CrossRef citations
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Research Paper

Article
Microbiota-derived butyrate is an endogenous HIF prolyl hydroxylase inhibitor
Ruth X. Wang, Morkos A. Henen, J. Scott Lee, Beat Vögeli & Sean P. Colgan
Article: 1938380
Published online: 30 Jun 2021
AbstractforMicrobiota-derived butyrate is an endogenous HIF prolyl hydroxylase inhibitor | Full Text | References | PDF (3.6 MB) | EPUB | Supplemental
  • 3410 Views
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Research Paper/Report

Article
The commensal bacterium Lactiplantibacillus plantarum imprints innate memory-like responses in mononuclear phagocytes
Aize Pellon, Diego Barriales, Ainize Peña-Cearra, Janire Castelo-Careaga, Ainhoa Palacios, Nerea Lopez, Estibaliz Atondo, Miguel Angel Pascual-Itoiz, Itziar Martín-Ruiz, Leticia Sampedro, Monika Gonzalez-Lopez, Laura Bárcena, Teresa Martín-Mateos, Jose María Landete, Rafael Prados-Rosales, Laura Plaza-Vinuesa, Rosario Muñoz, Blanca de las Rivas, Juan Miguel Rodríguez, Edurne Berra, Ana M. Aransay, Leticia Abecia, Jose Luis Lavín, Hector Rodríguez & Juan Anguita
Article: 1939598
Published online: 05 Jul 2021
AbstractforThe commensal bacterium Lactiplantibacillus plantarum imprints innate memory-like responses in mononuclear phagocytes | Full Text | References | PDF (1.6 MB) | EPUB | Supplemental
  • 3603 Views
  • 4 CrossRef citations
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Article
Gastrointestinal carriage of Klebsiella pneumoniae in a general adult population: a cross-sectional study of risk factors and bacterial genomic diversity
Niclas Raffelsberger, Marit Andrea Klokkhammer Hetland, Kristian Svendsen, Lars Småbrekke, Iren Høyland Löhr, Lotte Leonore Eivindsdatter Andreassen, Sylvain Brisse, Kathryn E. Holt, Arnfinn Sundsfjord, Ørjan Samuelsen & Kirsten Gravningen
Article: 1939599
Published online: 28 Jun 2021
AbstractforGastrointestinal carriage of Klebsiella pneumoniae in a general adult population: a cross-sectional study of risk factors and bacterial genomic diversity | Full Text | References | PDF (1.2 MB) | EPUB | Supplemental
  • 4404 Views
  • 15 CrossRef citations
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Review

Review
“Driver-passenger” bacteria and their metabolites in the pathogenesis of colorectal cancer
Marion Avril & R. William DePaolo
Article: 1941710
Published online: 05 Jul 2021
Abstractfor“Driver-passenger” bacteria and their metabolites in the pathogenesis of colorectal cancer | Full Text | References | PDF (1.5 MB) | EPUB
  • 4445 Views
  • 19 CrossRef citations
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Review
Probiotic and commensal gut microbial therapies in multiple sclerosis and its animal models: a comprehensive review
Lorrie L. Blais, Theresa L. Montgomery, Eyal Amiel, Paula B. Deming & Dimitry N. Krementsov
Article: 1943289
Published online: 15 Jul 2021
AbstractforProbiotic and commensal gut microbial therapies in multiple sclerosis and its animal models: a comprehensive review | Full Text | References | PDF (722.1 KB) | EPUB | Supplemental
  • 3152 Views
  • 9 CrossRef citations
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Research Paper

Article
Antibiotic-driven intestinal dysbiosis in pediatric short bowel syndrome is associated with persistently altered microbiome functions and gut-derived bloodstream infections
Robert Thänert, Anna Thänert, Jocelyn Ou, Adam Bajinting, Carey-Ann D. Burnham, Holly J. Engelstad, Maria E. Tecos, I. Malick Ndao, Carla Hall-Moore, Colleen Rouggly-Nickless, Mike A. Carl, Deborah C. Rubin, Nicholas O. Davidson, Phillip I. Tarr, Barbara B. Warner, Gautam Dantas & Brad W. Warner
Article: 1940792
Published online: 15 Jul 2021
AbstractforAntibiotic-driven intestinal dysbiosis in pediatric short bowel syndrome is associated with persistently altered microbiome functions and gut-derived bloodstream infections | Full Text | References | PDF (1.7 MB) | EPUB | Supplemental
  • 3180 Views
  • 6 CrossRef citations
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Open Access
Article
A combination of fecal calprotectin and human beta-defensin 2 facilitates diagnosis and monitoring of inflammatory bowel disease
R. Gacesa, A. Vich Vila, V. Collij, Z. Mujagic, A. Kurilshikov, M.D. Voskuil, E.A.M. Festen, C. Wijmenga, D.M.A.E. Jonkers, G. Dijkstra, J. Fu, A. Zhernakova, F. Imhann & R.K. Weersma
Article: 1943288
Published online: 27 Jul 2021
AbstractforA combination of fecal calprotectin and human beta-defensin 2 facilitates diagnosis and monitoring of inflammatory bowel disease | Full Text | References | PDF (2 MB) | EPUB | Supplemental
  • 2938 Views
  • 3 CrossRef citations
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Review

Review
Dysbiotic microbiota interactions in Crohn’s disease
Esther Caparrós, Reiner Wiest, Michael Scharl, Gerhard Rogler, Ana Gutiérrez Casbas, Bahtiyar Yilmaz, Marcin Wawrzyniak & Rubén Francés
Article: 1949096
Published online: 27 Jul 2021
AbstractforDysbiotic microbiota interactions in Crohn’s disease | Full Text | References | PDF (2.4 MB) | EPUB
  • 6138 Views
  • 22 CrossRef citations
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Research Paper

Article
Enzymatically synthesized exopolysaccharide of a probiotic strain Leuconostoc mesenteroides NTM048 shows adjuvant activity to promote IgA antibody responses
Chiaki Matsuzaki, Yukari Nakashima, Ikuto Endo, Yusuke Tomabechi, Yasuki Higashimura, Saki Itonori, Koji Hosomi, Jun Kunisawa, Kenji Yamamoto & Keiko Hisa
Article: 1949097
Published online: 21 Jul 2021
AbstractforEnzymatically synthesized exopolysaccharide of a probiotic strain Leuconostoc mesenteroides NTM048 shows adjuvant activity to promote IgA antibody responses | Full Text | References | PDF (1.4 MB) | EPUB | Supplemental
  • 2407 Views
  • 8 CrossRef citations
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Article
The effect of early probiotic exposure on the preterm infant gut microbiome development
Yan Hui, Birgitte Smith, Martin Steen Mortensen, Lukasz Krych, Søren J. Sørensen, Gorm Greisen, Karen Angeliki Krogfelt & Dennis Sandris Nielsen
Article: 1951113
Published online: 15 Jul 2021
AbstractforThe effect of early probiotic exposure on the preterm infant gut microbiome development | Full Text | References | PDF (3 MB) | EPUB | Supplemental
  • 4626 Views
  • 12 CrossRef citations
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Article
Host Gasdermin D restrains systemic endotoxemia by capturing Proteobacteria in the colon of high-fat diet-feeding mice
Yujie Shi, Yixin Zou, Yonghong Xiong, Shiyao Zhang, Mingming Song, Xiaofei An, Chang Liu, Wenxiang Zhang & Siyu Chen
Article: 1946369
Published online: 18 Jul 2021
AbstractforHost Gasdermin D restrains systemic endotoxemia by capturing Proteobacteria in the colon of high-fat diet-feeding mice | Full Text | References | PDF (4.2 MB) | EPUB | Supplemental
  • 2952 Views
  • 11 CrossRef citations
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Article
Transplantation of an obesity-associated human gut microbiota to mice induces vascular dysfunction and glucose intolerance
S. Raj J. Trikha, Dustin M. Lee, Kayl E. Ecton, Scott D. Wrigley, Allegra R. Vazquez, Nicole S. Litwin, Keely N. Thomas, Yuren Wei, Micah L. Battson, Sarah A. Johnson, Kristine A. Kuhn, Sean P. Colgan, Christopher L. Gentile & Tiffany L. Weir
Article: 1940791
Published online: 27 Jul 2021
AbstractforTransplantation of an obesity-associated human gut microbiota to mice induces vascular dysfunction and glucose intolerance | Full Text | References | PDF (1.2 MB) | EPUB | Supplemental
  • 3629 Views
  • 10 CrossRef citations
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Open Access

Review

Review
Investigating causality with fecal microbiota transplantation in rodents: applications, recommendations and pitfalls
Cassandra E. Gheorghe, Nathaniel L. Ritz, Jason A. Martin, Hannah R. Wardill, John F. Cryan & Gerard Clarke
Article: 1941711
Published online: 30 Jul 2021
AbstractforInvestigating causality with fecal microbiota transplantation in rodents: applications, recommendations and pitfalls | Full Text | References | PDF (3.9 MB) | EPUB
  • 7112 Views
  • 27 CrossRef citations
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Research Paper

Article
Chronic opioid use modulates human enteric microbiota and intestinal barrier integrity
Angélica Cruz-Lebrón, Ramona Johnson, Claire Mazahery, Zach Troyer, Samira Joussef-Piña, Miguel E. Quiñones-Mateu, Christopher M Strauch, Stanley L. Hazen & Alan D. Levine
Article: 1946368
Published online: 27 Jul 2021
AbstractforChronic opioid use modulates human enteric microbiota and intestinal barrier integrity | Full Text | References | PDF (2 MB) | EPUB | Supplemental
  • 3688 Views
  • 20 CrossRef citations
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Review

Review
Effect of different bile acids on the intestine through enterohepatic circulation based on FXR
Junwei Xiang, Zhengyan Zhang, Hongyi Xie, Chengcheng Zhang, Yan Bai, Hua Cao, Qishi Che, Jiao Guo & Zhengquan Su
Article: 1949095
Published online: 27 Jul 2021
AbstractforEffect of different bile acids on the intestine through enterohepatic circulation based on FXR | Full Text | References | PDF (2.2 MB) | EPUB | Supplemental
  • 5459 Views
  • 18 CrossRef citations
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Research Paper

Article
Distinct gut microbial compositional and functional changes associated with impaired inhibitory control in patients with cirrhosis
Jasmohan S Bajaj, Amirhossein Shamsaddini, Andrew Fagan, Sara McGeorge, Edith Gavis, Masoumeh Sikaroodi, Lisa A. Brenner, James B Wade & Patrick M Gillevet
Article: 1953247
Published online: 04 Aug 2021
AbstractforDistinct gut microbial compositional and functional changes associated with impaired inhibitory control in patients with cirrhosis | Full Text | References | PDF (2.6 MB) | EPUB | Supplemental
  • 2923 Views
  • 11 CrossRef citations
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Article
Statins significantly repress rotavirus replication through downregulation of cholesterol synthesis
Shihao Ding, Bingting Yu & Anneke J. van Vuuren
Article: 1955643
Published online: 07 Aug 2021
AbstractforStatins significantly repress rotavirus replication through downregulation of cholesterol synthesis | Full Text | References | PDF (10.6 MB) | EPUB | Supplemental
  • 1960 Views
  • 3 CrossRef citations
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Article
A bovine lactoferricin-lactoferrampin-encoding Lactobacillus reuteri CO21 regulates the intestinal mucosal immunity and enhances the protection of piglets against enterotoxigenic Escherichia coli K88 challenge
Weichun Xie, Liying Song, Xueying Wang, Yigang Xu, Zengsu Liu, Dongfang Zhao, Shubo Wang, Xiaolong Fan, Zhaorui Wang, Chong Gao, Xiaona Wang, Li Wang, Xinyuan Qiao, Han Zhou, Wen Cui, Yanping Jiang, Yijing Li & Lijie Tang
Article: 1956281
Published online: 07 Aug 2021
AbstractforA bovine lactoferricin-lactoferrampin-encoding Lactobacillus reuteri CO21 regulates the intestinal mucosal immunity and enhances the protection of piglets against enterotoxigenic Escherichia coli K88 challenge | Full Text | References | PDF (6.4 MB) | EPUB | Supplemental
  • 4314 Views
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Article
Imbalance of the intestinal virome and altered viral-bacterial interactions caused by a conditional deletion of the vitamin D receptor
Jilei Zhang, Yongguo Zhang, Yinglin Xia & Jun Sun
Article: 1957408
Published online: 10 Aug 2021
AbstractforImbalance of the intestinal virome and altered viral-bacterial interactions caused by a conditional deletion of the vitamin D receptor | Full Text | References | PDF (4.7 MB) | EPUB | Supplemental
  • 2887 Views
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Addendum

Article Commentary
A double-blind, 377-subject randomized study identifies Ruminococcus, Coprococcus, Christensenella, and Collinsella as long-term potential key players in the modulation of the gut microbiome of lactose intolerant individuals by galacto-oligosaccharides
M. A. Azcarate-Peril, J. Roach, A. Marsh, William D. Chey, William J. Sandborn, Andrew J. Ritter, Dennis A. Savaiano & T. R. Klaenhammer
Article: 1957536
Published online: 07 Aug 2021
AbstractforA double-blind, 377-subject randomized study identifies Ruminococcus, Coprococcus, Christensenella, and Collinsella as long-term potential key players in the modulation of the gut microbiome of lactose intolerant individuals by galacto-oligosaccharides | Full Text | References | PDF (7.1 MB) | EPUB | Supplemental
  • 5171 Views
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Research Paper

Article
cGAS-STING effectively restricts murine norovirus infection but antagonizes the antiviral action of N-terminus of RIG-I in mouse macrophages
Peifa Yu, Zhijiang Miao, Yang Li, Ruchi Bansal, Maikel P. Peppelenbosch & Qiuwei Pan
Article: 1959839
Published online: 04 Aug 2021
AbstractforcGAS-STING effectively restricts murine norovirus infection but antagonizes the antiviral action of N-terminus of RIG-I in mouse macrophages | Full Text | References | PDF (15.6 MB) | EPUB | Supplemental
  • 3548 Views
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Article
Decrease in acetyl-CoA pathway utilizing butyrate-producing bacteria is a key pathogenic feature of alcohol-induced functional gut microbial dysbiosis and development of liver disease in mice
Richa Singhal, Hridgandh Donde, Smita Ghare, Kendall Stocke, Jingwein Zhang, Manicka Vadhanam, Sreelatha Reddy, Leila Gobejishvili, Paula Chilton, Swati Joshi-Barve, Wenke Feng, Craig McClain, Kristi Hoffman, Joseph Petrosino, Marius Vital & Shirish Barve
Article: 1946367
Published online: 07 Aug 2021
AbstractforDecrease in acetyl-CoA pathway utilizing butyrate-producing bacteria is a key pathogenic feature of alcohol-induced functional gut microbial dysbiosis and development of liver disease in mice | Full Text | References | PDF (5 MB) | EPUB | Supplemental
  • 4015 Views
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Open Access

Review

Review
Molecular trafficking between bacteria determines the shape of gut microbial community
Seenivasan Boopathi, Danrui Liu & Ai-Qun Jia
Article: 1959841
Published online: 30 Aug 2021
AbstractforMolecular trafficking between bacteria determines the shape of gut microbial community | Full Text | References | PDF (1.9 MB) | EPUB | Supplemental
  • 2977 Views
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Research Paper

Article
Early life gut microbiota is associated with rapid infant growth in Hispanics from Southern California
Tanya L. Alderete, Roshonda B. Jones, Justin P. Shaffer, Elizabeth A. Holzhausen, William B. Patterson, Elham Kazemian, Lida Chatzi, Rob Knight, Jasmine F. Plows, Paige K. Berger & Michael I. Goran
Article: 1961203
Published online: 23 Aug 2021
AbstractforEarly life gut microbiota is associated with rapid infant growth in Hispanics from Southern California | Full Text | References | PDF (1.8 MB) | EPUB | Supplemental
  • 3864 Views
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Short Communication

Brief Report
Lacticaseibacillus paracasei DG enhances the lactoferrin anti-SARS-CoV-2 response in Caco-2 cells
Claudio Salaris, Melania Scarpa, Marina Elli, Alice Bertolini, Simone Guglielmetti, Fabrizio Pregliasco, Paola Brun & Ignazio Castagliuolo
Article: 1961970
Published online: 07 Aug 2021
AbstractforLacticaseibacillus paracasei DG enhances the lactoferrin anti-SARS-CoV-2 response in Caco-2 cells | Full Text | References | PDF (1.3 MB) | EPUB | Supplemental
  • 3595 Views
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Method

Article
A behavioral model for mapping the genetic architecture of gut-microbiota networks
Libo Jiang, Xinjuan Liu, Xiaoqing He, Yi Jin, Yige Cao, Xiang Zhan, Christopher H. Griffin, Claudia Gragnoli & Rongling Wu
Article: 1820847
Published online: 01 Nov 2020
AbstractforA behavioral model for mapping the genetic architecture of gut-microbiota networks | Full Text | References | PDF (6.3 MB) | EPUB
  • 4569 Views
  • 6 CrossRef citations
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Research Paper

Article
Bifidobacterium animalis: the missing link for the cancer-preventive effect of Gynostemma pentaphyllum
Weilin Liao, Imran Khan, Guoxin Huang, Shengshuang Chen, Liang Liu, Wai Kit Leong, Xiao Ang Li, Jianlin Wu & W. L. Wendy Hsiao
Article: 1847629
Published online: 24 Nov 2020
AbstractforBifidobacterium animalis: the missing link for the cancer-preventive effect of Gynostemma pentaphyllum | Full Text | References | PDF (9.6 MB) | EPUB | Supplemental
  • 4937 Views
  • 21 CrossRef citations
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Article
Alterations in microbiota and their metabolites are associated with beneficial effects of bile acid sequestrant on icteric primary biliary Cholangitis
Bo Li, Jun Zhang, Yong Chen, Qixia Wang, Li Yan, Rui Wang, Yiran Wei, Zhengrui You, Yikang Li, Qi Miao, Xiao Xiao, Min Lian, Weihua Chen, Dekai Qiu, Jingyuan Fang, M. Eric Gershwin, Ruqi Tang & Xiong Ma
Article: 1946366
Published online: 26 Aug 2021
AbstractforAlterations in microbiota and their metabolites are associated with beneficial effects of bile acid sequestrant on icteric primary biliary Cholangitis | Full Text | References | PDF (2.3 MB) | EPUB | Supplemental
  • 5220 Views
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Article
Gut microbes participate in food preference alterations during obesity
Alice de Wouters d’Oplinter, Marialetizia Rastelli, Matthias Van Hul, Nathalie M. Delzenne, Patrice D. Cani & Amandine Everard
Article: 1959242
Published online: 23 Aug 2021
AbstractforGut microbes participate in food preference alterations during obesity | Full Text | References | PDF (2.5 MB) | EPUB | Supplemental
  • 8880 Views
  • 23 CrossRef citations
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Article
Imaging the in vivo growth patterns of bacteria in human gut Microbiota
Liyuan Lin, Jia Song, Jian Li, Xiaolei Zuo, Hong Wei, Chaoyong Yang & Wei Wang
Article: 1960134
Published online: 24 Aug 2021
AbstractforImaging the in vivo growth patterns of bacteria in human gut Microbiota | Full Text | References | PDF (2.5 MB) | EPUB | Supplemental
  • 4046 Views
  • 6 CrossRef citations
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Review

Review
Helminth–virus interactions: determinants of coinfection outcomes
Pritesh Desai, Michael S. Diamond & Larissa B. Thackray
Article: 1961202
Published online: 24 Aug 2021
AbstractforHelminth–virus interactions: determinants of coinfection outcomes | Full Text | References | PDF (1.1 MB) | EPUB
  • 3407 Views
  • 5 CrossRef citations
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Research Paper

Article
Multi-targeted properties of the probiotic saccharomyces cerevisiae CNCM I-3856 against enterotoxigenic escherichia coli (ETEC) H10407 pathogenesis across human gut models
Charlène Roussel, Kim De Paepe, Wessam Galia, Jana de Bodt, Sandrine Chalancon, Sylvain Denis, Françoise Leriche, Pascal Vandekerkove, Nathalie Ballet, Stéphanie Blanquet-Diot & Tom Van de Wiele
Article: 1953246
Published online: 25 Aug 2021
AbstractforMulti-targeted properties of the probiotic saccharomyces cerevisiae CNCM I-3856 against enterotoxigenic escherichia coli (ETEC) H10407 pathogenesis across human gut models | Full Text | References | PDF (4.9 MB) | EPUB | Supplemental
  • 2793 Views
  • 6 CrossRef citations
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Review

Review
Sleep, circadian rhythm and gut microbiota: alterations in Alzheimer’s disease and their potential links in the pathogenesis
Yi Li, Lingzhan Shao, Yang Mou, Yan Zhang & Yong Ping
Article: 1957407
Published online: 14 Sep 2021
AbstractforSleep, circadian rhythm and gut microbiota: alterations in Alzheimer’s disease and their potential links in the pathogenesis | Full Text | References | PDF (1.4 MB) | EPUB
  • 9087 Views
  • 17 CrossRef citations
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Commentary and Views

Article Commentary
Teaching old mice new tricks: the utility of aged mouse models of C. difficile infection to study pathogenesis and rejuvenate immune response
Jae Hyun Shin, Sean W. Pawlowski & Cirle A. Warren
Article: 1966255
Published online: 25 Aug 2021
AbstractforTeaching old mice new tricks: the utility of aged mouse models of C. difficile infection to study pathogenesis and rejuvenate immune response | Full Text | References | PDF (537 KB) | EPUB
  • 1685 Views
  • 1 CrossRef citations
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Review

Review
The emerging roles of the gut microbiome in allogeneic hematopoietic stem cell transplantation
Lam T. Khuat, Maneesh Dave & William J. Murphy
Article: 1966262
Published online: 30 Aug 2021
AbstractforThe emerging roles of the gut microbiome in allogeneic hematopoietic stem cell transplantation | Full Text | References | PDF (912.5 KB) | EPUB
  • 2523 Views
  • 1 CrossRef citations
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Research Paper

Article
Associations of the gut microbiome with hepatic adiposity in the Multiethnic Cohort Adiposity Phenotype Study
Meredith A. J. Hullar, Isaac C. Jenkins, Timothy W. Randolph, Keith R. Curtis, Kristine R. Monroe, Thomas Ernst, John A. Shepherd, Daniel O. Stram, Iona Cheng, Bruce S. Kristal, Lynne R. Wilkens, Adrian Franke, Loic Le Marchand, Unhee Lim & Johanna W. Lampe
Article: 1965463
Published online: 07 Sep 2021
AbstractforAssociations of the gut microbiome with hepatic adiposity in the Multiethnic Cohort Adiposity Phenotype Study | Full Text | References | PDF (1.6 MB) | EPUB | Supplemental
  • 3332 Views
  • 7 CrossRef citations
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Review

Review
Enabling rational gut microbiome manipulations by understanding gut ecology through experimentally-evidenced in silico models
Juan P. Molina Ortiz, Dale D. McClure, Erin R. Shanahan, Fariba Dehghani, Andrew J. Holmes & Mark N. Read
Article: 1965698
Published online: 30 Aug 2021
AbstractforEnabling rational gut microbiome manipulations by understanding gut ecology through experimentally-evidenced in silico models | Full Text | References | PDF (3.8 MB) | EPUB
  • 2215 Views
  • 2 CrossRef citations
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Research Paper

Article
Impact of healthy aging on active bacterial assemblages throughout the gastrointestinal tract
Kerstin Schütte, Christian Schulz, Ramiro Vilchez-Vargas, Riccardo Vasapolli, Frederike Palm, Bianca Simon, Dirk Schomburg, Anke Lux, Robert Geffers, Dietmar H. Pieper, Alexander Link & Peter Malfertheiner
Article: 1966261
Published online: 30 Aug 2021
AbstractforImpact of healthy aging on active bacterial assemblages throughout the gastrointestinal tract | Full Text | References | PDF (2.7 MB) | EPUB | Supplemental
  • 2248 Views
  • 3 CrossRef citations
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Article
Identification of Allobaculum mucolyticum as a novel human intestinal mucin degrader
Guus H. van Muijlwijk, Guido van Mierlo, Pascal W.T.C. Jansen, Michiel Vermeulen, Nancy M.C. Bleumink-Pluym, Noah W. Palm, Jos P.M. van Putten & Marcel R. de Zoete
Article: 1966278
Published online: 30 Aug 2021
AbstractforIdentification of Allobaculum mucolyticum as a novel human intestinal mucin degrader | Full Text | References | PDF (1.7 MB) | EPUB | Supplemental
  • 4557 Views
  • 23 CrossRef citations
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Article
Microbiota metabolite butyrate constrains neutrophil functions and ameliorates mucosal inflammation in inflammatory bowel disease
Gengfeng Li, Jian Lin, Cui Zhang, Han Gao, Huiying Lu, Xiang Gao, Ruixin Zhu, Zhitao Li, Mingsong Li & Zhanju Liu
Article: 1968257
Published online: 08 Sep 2021
AbstractforMicrobiota metabolite butyrate constrains neutrophil functions and ameliorates mucosal inflammation in inflammatory bowel disease | Full Text | References | PDF (5.2 MB) | EPUB | Supplemental
  • 13167 Views
  • 65 CrossRef citations
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Brief Report

Brief Report
IL-27 induces LL-37/CRAMP expression from intestinal epithelial cells: implications for immunotherapy of Clostridioides difficile infection
Banglao Xu, Xianan Wu, Yi Gong & Ju Cao
Article: 1968258
Published online: 25 Aug 2021
AbstractforIL-27 induces LL-37/CRAMP expression from intestinal epithelial cells: implications for immunotherapy of Clostridioides difficile infection | Full Text | References | PDF (1.3 MB) | EPUB | Supplemental
  • 2060 Views
  • 4 CrossRef citations
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Research Paper

Article
Deprivation of dietary fiber in specific-pathogen-free mice promotes susceptibility to the intestinal mucosal pathogen Citrobacter rodentium
Mareike Neumann, Alex Steimle, Erica T. Grant, Mathis Wolter, Amy Parrish, Stéphanie Willieme, Dirk Brenner, Eric C. Martens & Mahesh S. Desai
Article: 1966263
Published online: 16 Sep 2021
AbstractforDeprivation of dietary fiber in specific-pathogen-free mice promotes susceptibility to the intestinal mucosal pathogen Citrobacter rodentium | Full Text | References | PDF (2.5 MB) | EPUB
  • 3828 Views
  • 15 CrossRef citations
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Review

Review
Updating changes in human gut microbial communities associated with Clostridioides difficile infection
Giovanny Herrera, Daniel Paredes-Sabja, Manuel Alfonso Patarroyo, Juan David Ramírez & Marina Muñoz
Article: 1966277
Published online: 05 Sep 2021
AbstractforUpdating changes in human gut microbial communities associated with Clostridioides difficile infection | Full Text | References | PDF (1.3 MB) | EPUB
  • 2140 Views
  • 2 CrossRef citations
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Review
Gut microbiota associations with metabolic syndrome and relevance of its study in pediatric subjects
Ana K. Carrizales-Sánchez, Tomás García-Cayuela, Carmen Hernández-Brenes & Carolina Senés-Guerrero
Article: 1960135
Published online: 07 Sep 2021
AbstractforGut microbiota associations with metabolic syndrome and relevance of its study in pediatric subjects | Full Text | References | PDF (1.2 MB) | EPUB
  • 3975 Views
  • 16 CrossRef citations
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Research Paper

Article
Ursolic acid reverses liver fibrosis by inhibiting NOX4/NLRP3 inflammasome pathways and bacterial dysbiosis
Yuan Nie, Qi Liu, Wang Zhang, Yipeng Wan, Chenkai Huang & Xuan Zhu
Article: 1972746
Published online: 16 Sep 2021
AbstractforUrsolic acid reverses liver fibrosis by inhibiting NOX4/NLRP3 inflammasome pathways and bacterial dysbiosis | Full Text | References | PDF (4.5 MB) | EPUB | Supplemental
  • 5640 Views
  • 16 CrossRef citations
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Article
Dietary spinach reshapes the gut microbiome in an Apc-mutant genetic background: mechanistic insights from integrated multi-omics
Ying-Shiuan Chen, Jia Li, Rani Menon, Arul Jayaraman, Kyongbum Lee, Yun Huang, Wan Mohaiza Dashwood, Ke Zhang, Deqiang Sun & Roderick H. Dashwood
Article: 1972756
Published online: 08 Sep 2021
AbstractforDietary spinach reshapes the gut microbiome in an Apc-mutant genetic background: mechanistic insights from integrated multi-omics | Full Text | References | PDF (4.8 MB) | EPUB | Supplemental
  • 7293 Views
  • 10 CrossRef citations
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Article
Next-generation prebiotic promotes selective growth of bifidobacteria, suppressing Clostridioides difficile
Rika Hirano, Mikiyasu Sakanaka, Kazuto Yoshimi, Naohisa Sugimoto, Syogo Eguchi, Yuko Yamauchi, Misaki Nara, Shingo Maeda, Yuta Ami, Aina Gotoh, Takane Katayama, Noriho Iida, Tamotsu Kato, Hiroshi Ohno, Satoru Fukiya, Atsushi Yokota, Mamoru Nishimoto, Motomitsu Kitaoka, Hiroyuki Nakai & Shin Kurihara
Article: 1973835
Published online: 23 Sep 2021
AbstractforNext-generation prebiotic promotes selective growth of bifidobacteria, suppressing Clostridioides difficile | Full Text | References | PDF (2.2 MB) | EPUB | Supplemental
  • 5463 Views
  • 11 CrossRef citations
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Brief Report

Brief Report
SPI2 T3SS effectors facilitate enterocyte apical to basolateral transmigration of Salmonella-containing vacuoles in vivo
Marcus Fulde, Kira van Vorst, Kaiyi Zhang, Alexander J. Westermann, Tobias Busche, Yong Chiun Huei, Katharina Welitschanski, Isabell Froh, Dennis Pägelow, Johanna Plendl, Christiane Pfarrer, Jörn Kalinowski, Jörg Vogel, Peter Valentin-Weigand, Michael Hensel, Karsten Tedin, Urska Repnik & Mathias W. Hornef
Article: 1973836
Published online: 20 Sep 2021
AbstractforSPI2 T3SS effectors facilitate enterocyte apical to basolateral transmigration of Salmonella-containing vacuoles in vivo | Full Text | References | PDF (3.1 MB) | EPUB | Supplemental
  • 2878 Views
  • 4 CrossRef citations
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Research Paper

Article
Hyaluronan-induced alterations of the gut microbiome protects mice against Citrobacter rodentium infection and intestinal inflammation
Tangyou Mao, Chien-Wen Su, Qiaorong Ji, Chih-Yu Chen, Rongjun Wang, Deepak Vijaya Kumar, Jinggang Lan, Lefei Jiao & Hai Ning Shi
Article: 1972757
Published online: 30 Sep 2021
AbstractforHyaluronan-induced alterations of the gut microbiome protects mice against Citrobacter rodentium infection and intestinal inflammation | Full Text | References | PDF (6.5 MB) | EPUB
  • 4587 Views
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Review

Review
Mucins, gut microbiota, and postbiotics role in colorectal cancer
Ramesh Pothuraju, Sanjib Chaudhary, Satyanarayana Rachagani, Sukhwinder Kaur, Hemant K. Roy, Michael Bouvet & Surinder K. Batra
Article: 1974795
Published online: 29 Sep 2021
AbstractforMucins, gut microbiota, and postbiotics role in colorectal cancer | Full Text | References | PDF (2 MB) | EPUB
  • 7514 Views
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Letter to the editor

Norovirus diarrhea is significantly associated with higher counts of fecal histo-blood group antigen expressing Enterobacter cloacae among black South African infants
Cliff A Magwira, Duncan Steele & ML Seheri
Article: 1979876
Published online: 29 Sep 2021
AbstractforNorovirus diarrhea is significantly associated with higher counts of fecal histo-blood group antigen expressing Enterobacter cloacae among black South African infants | Full Text | References | PDF (407.3 KB) | EPUB
  • 1499 Views
  • 3 CrossRef citations
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Review

Review
The interplay between gut bacteria and the yeast Candida albicans
J. Christian Pérez
Article: 1979877
Published online: 29 Sep 2021
AbstractforThe interplay between gut bacteria and the yeast Candida albicans | Full Text | References | PDF (635 KB) | EPUB
  • 4240 Views
  • 10 CrossRef citations
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Research Paper

Article
Guidelines for reporting on animal fecal transplantation (GRAFT) studies: recommendations from a systematic review of murine transplantation protocols
Kate R. Secombe, Ghanyah H. Al-Qadami, Courtney B. Subramaniam, Joanne M. Bowen, Jacqui Scott, Ysabella Z.A. Van Sebille, Matthew Snelson, Caitlin Cowan, Gerard Clarke, Cassandra E. Gheorghe, John F. Cryan & Hannah R. Wardill
Article: 1979878
Published online: 29 Sep 2021
AbstractforGuidelines for reporting on animal fecal transplantation (GRAFT) studies: recommendations from a systematic review of murine transplantation protocols | Full Text | References | PDF (1.7 MB) | EPUB | Supplemental
  • 5570 Views
  • 20 CrossRef citations
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Article
High alcohol-producing Klebsiella pneumoniae causes fatty liver disease through 2,3-butanediol fermentation pathway in vivo
Nan-Nan Li, Wei Li, Jun-Xia Feng, Bing Du, Rui Zhang, Shu-Heng Du, Shi-Yu Liu, Guan-Hua Xue, Chao Yan, Jing-Hua Cui, Han-Qing Zhao, Yan-Ling Feng, Lin Gan, Qun Zhang, Wei-Wei Zhang, Di Liu, Chen Chen & Jing Yuan
Article: 1979883
Published online: 10 Oct 2021
AbstractforHigh alcohol-producing Klebsiella pneumoniae causes fatty liver disease through 2,3-butanediol fermentation pathway in vivo | Full Text | References | PDF (3.4 MB) | EPUB
  • 3720 Views
  • 10 CrossRef citations
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Article
Fusobacterium nucleatum promotes colorectal cancer metastasis through miR-1322/CCL20 axis and M2 polarization
Chaochao Xu, Lina Fan, Yifeng Lin, Weiyi Shen, Yadong Qi, Ying Zhang, Zhehang Chen, Lan Wang, Yanqin Long, Tongyao Hou, Jianmin Si & Shujie Chen
Article: 1980347
Published online: 10 Oct 2021
AbstractforFusobacterium nucleatum promotes colorectal cancer metastasis through miR-1322/CCL20 axis and M2 polarization | Full Text | References | PDF (7.2 MB) | EPUB
  • 7917 Views
  • 44 CrossRef citations
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Article
Two ST11 Klebsiella pneumoniae strains exacerbate colorectal tumorigenesis in a colitis-associated mouse model
Ming-Ko Chiang, Pei-Yi Hsiao, Yen-Yi Liu, Hui-Ling Tang, Chien-Shun Chiou, Min-Chi Lu & Yi-Chyi Lai
Article: 1980348
Published online: 04 Oct 2021
AbstractforTwo ST11 Klebsiella pneumoniae strains exacerbate colorectal tumorigenesis in a colitis-associated mouse model | Full Text | References | PDF (7.7 MB) | EPUB | Supplemental
  • 3641 Views
  • 8 CrossRef citations
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Review

Review
Pathobionts: mechanisms of survival, expansion, and interaction with host with a focus on Clostridioides difficile
Harish Chandra, Krishna Kant Sharma, Olli H. Tuovinen, Xingmin Sun & Pratyoosh Shukla
Article: 1979882
Published online: 01 Nov 2021
AbstractforPathobionts: mechanisms of survival, expansion, and interaction with host with a focus on Clostridioides difficile | Full Text | References | PDF (2.3 MB) | EPUB
  • 2995 Views
  • 12 CrossRef citations
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Commentary and Views

Article Commentary
Colonic expression of Ace2, the SARS-CoV-2 entry receptor, is suppressed by commensal human microbiota
Adam Edwinson, Lu Yang, Jun Chen & Madhusudan Grover
Article: 1984105
Published online: 10 Oct 2021
AbstractforColonic expression of Ace2, the SARS-CoV-2 entry receptor, is suppressed by commensal human microbiota | Full Text | References | PDF (748.9 KB) | EPUB
  • 2135 Views
  • 13 CrossRef citations
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Review

Review
Akkermansia muciniphila: is it the Holy Grail for ameliorating metabolic diseases?
Juan Yan, Lili Sheng & Houkai Li
Article: 1984104
Published online: 21 Oct 2021
AbstractforAkkermansia muciniphila: is it the Holy Grail for ameliorating metabolic diseases? | Full Text | References | PDF (1 MB) | EPUB
  • 6445 Views
  • 22 CrossRef citations
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Research Paper

Article
Activation of epigenetic regulator KDM6B by Salmonella Typhimurium enables chronic infections
Sarika Rana, Sonalika Maurya, Gayatree Mohapatra, Savita Singh, Rohan Babar, Hridya Chandrasekhar, Garima Chamoli, Deepak Rathore, Pallavi Kshetrapal & C. V. Srikanth
Article: 1986665
Published online: 25 Oct 2021
AbstractforActivation of epigenetic regulator KDM6B by Salmonella Typhimurium enables chronic infections | Full Text | References | PDF (2.9 MB) | EPUB | Supplemental
  • 2557 Views
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Article
Bifidobacterium catabolism of human milk oligosaccharides overrides endogenous competitive exclusion driving colonization and protection
Britta E. Heiss, Amy M. Ehrlich, Maria X. Maldonado-Gomez, Diana H. Taft, Jules A. Larke, Michael L. Goodson, Carolyn M. Slupsky, Daniel J. Tancredi, Helen E. Raybould & David A. Mills
Article: 1986666
Published online: 27 Oct 2021
AbstractforBifidobacterium catabolism of human milk oligosaccharides overrides endogenous competitive exclusion driving colonization and protection | Full Text | References | PDF (2.4 MB) | EPUB | Supplemental
  • 4214 Views
  • 7 CrossRef citations
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Article
Activation of ectopic olfactory receptor 544 induces GLP-1 secretion and regulates gut inflammation
Chunyan Wu, Mi-Young Jeong, Jung Yeon Kim, Giljae Lee, Ji-Sun Kim, Yu Eun Cheong, Hyena Kang, Chung Hwan Cho, Jimin Kim, Min Kyung Park, You Kyoung Shin, Kyoung Heon Kim, Geun Hee Seol, Seung Hoi Koo, GwangPyo Ko & Sung-Joon Lee
Article: 1987782
Published online: 21 Oct 2021
AbstractforActivation of ectopic olfactory receptor 544 induces GLP-1 secretion and regulates gut inflammation | Full Text | References | PDF (3.1 MB) | EPUB | Supplemental
  • 5423 Views
  • 8 CrossRef citations
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Review

Review
Oscillospira - a candidate for the next-generation probiotics
Jingpeng Yang, Yanan Li, Zhiqiang Wen, Wenzheng Liu, Lingtong Meng & He Huang
Article: 1987783
Published online: 25 Oct 2021
AbstractforOscillospira - a candidate for the next-generation probiotics | Full Text | References | PDF (650.2 KB) | EPUB
  • 7894 Views
  • 60 CrossRef citations
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Research Paper

Article
Fungal lysozyme leverages the gut microbiota to curb DSS-induced colitis
Ida Søgaard Larsen, Benjamin A. H. Jensen, Erica Bonazzi, Béatrice S. Y. Choi, Nanna Ny Kristensen, Esben Gjerløff Wedebye Schmidt, Annika Süenderhauf, Laurence Morin, Peter Bjarke Olsen, Lea Benedicte Skov Hansen, Torsten Schröder, Christian Sina, Benoît Chassaing & André Marette
Article: 1988836
Published online: 25 Oct 2021
AbstractforFungal lysozyme leverages the gut microbiota to curb DSS-induced colitis | Full Text | References | PDF (4.4 MB) | EPUB | Supplemental
  • 6137 Views
  • 13 CrossRef citations
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Brief Report

Brief Report
Microbial contribution to the caloric restriction-triggered regulation of the intestinal levels of glutathione transferases, taurine, and bile acid
András Gregor, Marc Pignitter, Slave Trajanoski, Sandra Auernigg-Haselmaier, Veronika Somoza, Jürgen König & Kalina Duszka
Article: 1992236
Published online: 25 Oct 2021
AbstractforMicrobial contribution to the caloric restriction-triggered regulation of the intestinal levels of glutathione transferases, taurine, and bile acid | Full Text | References | PDF (1.8 MB) | EPUB | Supplemental
  • 2028 Views
  • 3 CrossRef citations
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Review

Review
Gut non-bacterial microbiota contributing to alcohol-associated liver disease
Wenkang Gao, Yixin Zhu, Jin Ye & Huikuan Chu
Article: 1984122
Published online: 28 Oct 2021
AbstractforGut non-bacterial microbiota contributing to alcohol-associated liver disease | Full Text | References | PDF (1.4 MB) | EPUB | Supplemental
  • 3551 Views
  • 9 CrossRef citations
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Research Paper

Article
The interaction of enteric bacterial effectors with the host engulfment pathway control innate immune responses
Ibrahim M Sayed, Stella-Rita Ibeawuchi, Dominique Lie, Mahitha Shree Anandachar, Rama Pranadinata, Manuela Raffatellu & Soumita Das
Article: 1991776
Published online: 01 Nov 2021
AbstractforThe interaction of enteric bacterial effectors with the host engulfment pathway control innate immune responses | Full Text | References | PDF (2.6 MB) | EPUB | Supplemental
  • 2165 Views
  • 4 CrossRef citations
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Review

Review
Virulence-related O islands in enterohemorrhagic Escherichia coli O157:H7
Lingyan Jiang, Wen Yang, Xinlei Jiang, Ting Yao, Lu Wang & Bin Yang
Article: 1992237
Published online: 28 Oct 2021
AbstractforVirulence-related O islands in enterohemorrhagic Escherichia coli O157:H7 | Full Text | References | PDF (2.3 MB) | EPUB | Supplemental
  • 2633 Views
  • 5 CrossRef citations
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Brief Report

Brief Report
Fecal microbiota transplantation for recurrent C. difficile infection in patients with inflammatory bowel disease: experience of a large-volume European FMT center
Gianluca Ianiro, Stefano Bibbò, Serena Porcari, Carlo Romano Settanni, Federica Giambò, Andreea Roxana Curta, Gianluca Quaranta, Franco Scaldaferri, Luca Masucci, Maurizio Sanguinetti, Antonio Gasbarrini & Giovanni Cammarota
Article: 1994834
Published online: 28 Oct 2021
AbstractforFecal microbiota transplantation for recurrent C. difficile infection in patients with inflammatory bowel disease: experience of a large-volume European FMT center | Full Text | References | PDF (439.5 KB) | EPUB
  • 3471 Views
  • 13 CrossRef citations
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Research Paper

Article
The Mucosally-Adherent Rectal Microbiota Contains Features Unique to Alcohol-Related Cirrhosis
Ting-Chin David Shen, Scott G. Daniel, Shivali Patel, Emily Kaplan, Lillian Phung, Kaylin Lemelle-Thomas, Lillian Chau, Lindsay Herman, Calvin Trisolini, Aimee Stonelake, Emily Toal, Vandana Khungar, Kyle Bittinger, K. Rajender Reddy & Gary D. Wu
Article: 1987781
Published online: 07 Nov 2021
AbstractforThe Mucosally-Adherent Rectal Microbiota Contains Features Unique to Alcohol-Related Cirrhosis | Full Text | References | PDF (870.8 KB) | EPUB | Supplemental
  • 1890 Views
  • 8 CrossRef citations
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Article
Effects of fecal microbiota transplant on DNA methylation in subjects with metabolic syndrome
Eduard W. J. van der Vossen, Diogo Bastos, Daniela Stols-Gonçalves, Marcus C. de Goffau, Mark Davids, Joao P. B. Pereira, Andrew Y. F. Li Yim, Peter Henneman, Mihai G. Netea, Willem M. de Vos, Wouter de Jonge, Albert K. Groen, Max Nieuwdorp & Evgeni Levin
Article: 1993513
Published online: 07 Nov 2021
AbstractforEffects of fecal microbiota transplant on DNA methylation in subjects with metabolic syndrome | Full Text | References | PDF (2.1 MB) | EPUB | Supplemental
  • 4147 Views
  • 14 CrossRef citations
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Article
Inulin-grown Faecalibacterium prausnitzii cross-feeds fructose to the human intestinal epithelium
Raphael R. Fagundes, Arno R. Bourgonje, Ali Saeed, Arnau Vich Vila, Niels Plomp, Tjasso Blokzijl, Mehdi Sadaghian Sadabad, Julius Z. H. von Martels, Sander S. van Leeuwen, Rinse K. Weersma, Gerard Dijkstra, Hermie J. M. Harmsen & Klaas Nico Faber
Article: 1993582
Published online: 18 Nov 2021
AbstractforInulin-grown Faecalibacterium prausnitzii cross-feeds fructose to the human intestinal epithelium | Full Text | References | PDF (2.4 MB) | EPUB | Supplemental
  • 4331 Views
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Brief Report

Brief Report
E.coli Nissle increases transcription of flagella assembly and formate hydrogenlyase genes in response to colitis
Louis C Dacquay, Derek Tsang, Donny Chan, John Parkinson, Dana J Philpott & David R McMillen
Article: 1994832
Published online: 09 Nov 2021
AbstractforE.coli Nissle increases transcription of flagella assembly and formate hydrogenlyase genes in response to colitis | Full Text | References | PDF (1.8 MB) | EPUB | Supplemental
  • 2244 Views
  • 1 CrossRef citations
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Research Paper

Article
Association of Adherent-invasive Escherichia coli with severe Gut Mucosal dysbiosis in Hong Kong Chinese population with Crohn’s disease
Zhilu Xu, Xiangqian Dong, Keli Yang, Caroline Chevarin, Jingwan Zhang, Yu Lin, Tao Zuo, Lok Cheung Chu, Yang Sun, Fengrui Zhang, Francis Kl Chan, Joseph Jy Sung, Jun Yu, Anthony Buisson, Nicolas Barnich, Jean-Frédéric Colombel, Sunny Hei Wong, Yinglei Miao & Siew C Ng
Article: 1994833
Published online: 23 Nov 2021
AbstractforAssociation of Adherent-invasive Escherichia coli with severe Gut Mucosal dysbiosis in Hong Kong Chinese population with Crohn’s disease | Full Text | References | PDF (2.7 MB) | EPUB | Supplemental
  • 2841 Views
  • 2 CrossRef citations
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Open Access

Review

Review
Effects of anti-aging interventions on intestinal microbiota
Yanjiao Du, Yue Gao, Bo Zeng, Xiaolan Fan, Deying Yang & Mingyao Yang
Article: 1994835
Published online: 08 Nov 2021
AbstractforEffects of anti-aging interventions on intestinal microbiota | Full Text | References | PDF (795.7 KB) | EPUB
  • 10426 Views
  • 16 CrossRef citations
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Research Paper

Article
Isolation of pancreatic microbiota from cystic precursors of pancreatic cancer with intracellular growth and DNA damaging properties
Asif Halimi, Giorgio Gabarrini, Michał Jacek Sobkowiak, Zeeshan Ateeb, Haleh Davanian, Rogier Aäron Gaiser, Urban Arnelo, Roberto Valente, Alicia Y.W. Wong, Carlos Fernández Moro, Marco Del Chiaro, Volkan Özenci & Margaret Sällberg Chen
Article: 1983101
Published online: 24 Nov 2021
AbstractforIsolation of pancreatic microbiota from cystic precursors of pancreatic cancer with intracellular growth and DNA damaging properties | Full Text | References | PDF (2.1 MB) | EPUB
  • 5627 Views
  • 7 CrossRef citations
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Article
Depression and anxiety in patients with active ulcerative colitis: crosstalk of gut microbiota, metabolomics and proteomics
Xiaomin Yuan, Biqing Chen, Zhenglan Duan, Ziqian Xia, Yang Ding, Tuo Chen, Huize Liu, Baosheng Wang, Bolin Yang, Xiaoyong Wang, Shijia Liu, Jin-Yong Zhou, Yajun Liu, Qiong Wang, Zhaofeng Shen, Jun Xiao, Hongtao Shang, Weiwei Liu, Guoping Shi, Lei Zhu & Yugen Chen
Article: 1987779
Published online: 21 Nov 2021
AbstractforDepression and anxiety in patients with active ulcerative colitis: crosstalk of gut microbiota, metabolomics and proteomics | Full Text | References | PDF (5.2 MB) | EPUB | Supplemental
  • 14108 Views
  • 26 CrossRef citations
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Research paper

Article
Fusobacterium nucleatum drives a pro-inflammatory intestinal microenvironment through metabolite receptor-dependent modulation of IL-17 expression
Caitlin A. Brennan, Slater L. Clay, Sydney L. Lavoie, Sena Bae, Jessica K. Lang, Diogo Fonseca-Pereira, Kathryn G. Rosinski, Nora Ou, Jonathan N. Glickman & Wendy S. Garrett
Article: 1987780
Published online: 15 Nov 2021
AbstractforFusobacterium nucleatum drives a pro-inflammatory intestinal microenvironment through metabolite receptor-dependent modulation of IL-17 expression | Full Text | References | PDF (1.6 MB) | EPUB | Supplemental
  • 7000 Views
  • 24 CrossRef citations
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Research Paper

Article
Yersinia pseudotuberculosis YopE prevents uptake by M cells and instigates M cell extrusion in human ileal enteroid-derived monolayers
Alyssa C. Fasciano, Gaya S. Dasanayake, Mary K. Estes, Nicholas C. Zachos, David T. Breault, Ralph R. Isberg, Shumin Tan & Joan Mecsas
Article: 1988390
Published online: 18 Nov 2021
AbstractforYersinia pseudotuberculosis YopE prevents uptake by M cells and instigates M cell extrusion in human ileal enteroid-derived monolayers | Full Text | References | PDF (4.7 MB) | EPUB | Supplemental
  • 1984 Views
  • 5 CrossRef citations
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Review

Review
Gut microbiota: sculptors of the intestinal stem cell niche in health and inflammatory bowel disease
Manasvini Markandey, Aditya Bajaj, Nicholas Edward Ilott, Saurabh Kedia, Simon Travis, Fiona Powrie & Vineet Ahuja
Article: 1990827
Published online: 07 Nov 2021
AbstractforGut microbiota: sculptors of the intestinal stem cell niche in health and inflammatory bowel disease | Full Text | References | PDF (3.1 MB) | EPUB
  • 4988 Views
  • 17 CrossRef citations
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Research Paper

Article
Naturalizing laboratory mice by housing in a farmyard-type habitat confers protection against colorectal carcinogenesis
Henriette Arnesen, Thomas C. A. Hitch, Christina Steppeler, Mette Helen Bjørge Müller, Linn Emilie Knutsen, Gjermund Gunnes, Inga Leena Angell, Ida Ormaasen, Knut Rudi, Jan Erik Paulsen, Thomas Clavel, Harald Carlsen & Preben Boysen
Article: 1993581
Published online: 09 Nov 2021
AbstractforNaturalizing laboratory mice by housing in a farmyard-type habitat confers protection against colorectal carcinogenesis | Full Text | References | PDF (3.6 MB) | EPUB | Supplemental
  • 2913 Views
  • 2 CrossRef citations
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Open Access

Brief Report

Brief Report
Bacterial membrane vesicles and phages in blood after consumption of Lacticaseibacillus rhamnosus JB-1
Kevin Champagne-Jorgensen, Tamina A. Jose, Andrew M. Stanisz, M. Firoz Mian, Alexander P. Hynes & John Bienenstock
Article: 1993583
Published online: 07 Nov 2021
AbstractforBacterial membrane vesicles and phages in blood after consumption of Lacticaseibacillus rhamnosus JB-1 | Full Text | References | PDF (4 MB) | EPUB | Supplemental
  • 3666 Views
  • 5 CrossRef citations
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Research Paper

Article
Multiple bacterial virulence factors focused on adherence and biofilm formation associate with outcomes in cirrhosis
Jasmohan S Bajaj, Amirhossein Shamsaddini, Chathur Acharya, Andrew Fagan, Masoumeh Sikaroodi, Edith Gavis, Sara McGeorge, Alexander Khoruts, Michael Fuchs, Richard K Sterling, Hannah Lee & Patrick M Gillevet
Article: 1993584
Published online: 08 Nov 2021
AbstractforMultiple bacterial virulence factors focused on adherence and biofilm formation associate with outcomes in cirrhosis | Full Text | References | PDF (2.1 MB) | EPUB | Supplemental
  • 3156 Views
  • 1 CrossRef citations
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Article
An integrative understanding of the large metabolic shifts induced by antibiotics in critical illness
Andrea Marfil-Sánchez, Lu Zhang, Pol Alonso-Pernas, Mohammad Mirhakkak, Melinda Mueller, Bastian Seelbinder, Yueqiong Ni, Rakesh Santhanam, Anne Busch, Christine Beemelmanns, Maria Ermolaeva, Michael Bauer & Gianni Panagiotou
Article: 1993598
Published online: 18 Nov 2021
AbstractforAn integrative understanding of the large metabolic shifts induced by antibiotics in critical illness | Full Text | References | PDF (5.1 MB) | EPUB | Supplemental
  • 2756 Views
  • 3 CrossRef citations
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Open Access
Article
Serum metabolite profiling yields insights into health promoting effect of A. muciniphila in human volunteers with a metabolic syndrome
Clara Depommier, Amandine Everard, Céline Druart, Dominique Maiter, Jean-Paul Thissen, Audrey Loumaye, Michel P. Hermans, Nathalie M. Delzenne, Willem M. de Vos & Patrice D. Cani
Article: 1994270
Published online: 23 Nov 2021
AbstractforSerum metabolite profiling yields insights into health promoting effect of A. muciniphila in human volunteers with a metabolic syndrome | Full Text | References | PDF (5.4 MB) | EPUB | Supplemental
  • 4379 Views
  • 19 CrossRef citations
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Open Access

Methods

Article
An integrated workflow for enhanced taxonomic and functional coverage of the mouse fecal metaproteome
Nicolas Nalpas, Lesley Hoyles, Viktoria Anselm, Tariq Ganief, Laura Martinez-Gili, Cristina Grau, Irina Droste-Borel, Laetitia Davidovic, Xavier Altafaj, Marc-Emmanuel Dumas & Boris Macek
Article: 1994836
Published online: 11 Nov 2021
AbstractforAn integrated workflow for enhanced taxonomic and functional coverage of the mouse fecal metaproteome | Full Text | References | PDF (1.9 MB) | EPUB | Supplemental
  • 2190 Views
  • 2 CrossRef citations
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Open Access

Brief Report

Brief Report
Gut microbiota of adults with asthma is broadly similar to non-asthmatics in a large population with varied ethnic origins
Robert F. J. Kullberg, Bastiaan W. Haak, Mahmoud I. Abdel-Aziz, Mark Davids, Floor Hugenholtz, Max Nieuwdorp, Henrike Galenkamp, Maria Prins, Anke H. Maitland-van der Zee & W. Joost Wiersinga
Article: 1995279
Published online: 08 Nov 2021
AbstractforGut microbiota of adults with asthma is broadly similar to non-asthmatics in a large population with varied ethnic origins | Full Text | References | PDF (1.5 MB) | EPUB | Supplemental
  • 1772 Views
  • 4 CrossRef citations
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Open Access

Research Paper

Article
The anti-inflammatory effect of bacterial short chain fatty acids is partially mediated by endocannabinoids
Amrita Vijay, Afroditi Kouraki, Sameer Gohir, James Turnbull, Anthony Kelly, Vicky Chapman, David A Barrett, William J Bulsiewicz & Ana M Valdes
Article: 1997559
Published online: 17 Nov 2021
AbstractforThe anti-inflammatory effect of bacterial short chain fatty acids is partially mediated by endocannabinoids | Full Text | References | PDF (2.1 MB) | EPUB | Supplemental
  • 14468 Views
  • 24 CrossRef citations
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Article
Aberrant enteric neuromuscular system and dysbiosis in amyotrophic lateral sclerosis
Yongguo Zhang, Destiny Ogbu, Shari Garrett, Yinglin Xia & Jun Sun
Article: 1996848
Published online: 23 Nov 2021
AbstractforAberrant enteric neuromuscular system and dysbiosis in amyotrophic lateral sclerosis | Full Text | References | PDF (3.5 MB) | EPUB
  • 4583 Views
  • 12 CrossRef citations
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Open Access
Article
Intestinal microbial communities and Holdemanella isolated from HIV+/− men who have sex with men increase frequencies of lamina propria CCR5+ CD4+ T cells
Eiko Yamada, Casey G. Martin, Nancy Moreno-Huizar, Jennifer Fouquier, C. Preston Neff, Sara L. Coleman, Jennifer M. Schneider, Jonathan Huber, Nichole M. Nusbacher, Martin McCarter, Thomas B. Campbell, Catherine A. Lozupone & Brent E. Palmer
Article: 1997292
Published online: 24 Nov 2021
AbstractforIntestinal microbial communities and Holdemanella isolated from HIV+/− men who have sex with men increase frequencies of lamina propria CCR5+ CD4+ T cells | Full Text | References | PDF (1.2 MB) | EPUB | Supplemental
  • 2166 Views
  • 2 CrossRef citations
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Article
Bacteroidota and Lachnospiraceae integration into the gut microbiome at key time points in early life are linked to infant neurodevelopment
Kaitlyn Oliphant, Mehneez Ali, Mark D’Souza, Patrick D. Hughes, Dinanath Sulakhe, Annie Z. Wang, Bingqing Xie, Rummanu Yeasin, Michael E. Msall, Bree Andrews & Erika C. Claud
Article: 1997560
Published online: 28 Nov 2021
AbstractforBacteroidota and Lachnospiraceae integration into the gut microbiome at key time points in early life are linked to infant neurodevelopment | Full Text | References | PDF (2.2 MB) | EPUB | Supplemental
  • 4066 Views
  • 15 CrossRef citations
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Open Access
Article
The postnatal window is critical for the development of sex-specific metabolic and gut microbiota outcomes in offspring
Laurence Daoust, Béatrice S.-Y. Choi, Sébastien Lacroix, Vanessa Rodrigues Vilela, Thibault Vincent Varin, Stéphanie Dudonné, Geneviève Pilon, Denis Roy, Emile Levy, Yves Desjardins, Benoit Chassaing & André Marette
Article: 2004070
Published online: 23 Nov 2021
AbstractforThe postnatal window is critical for the development of sex-specific metabolic and gut microbiota outcomes in offspring | Full Text | References | PDF (4 MB) | EPUB | Supplemental
  • 2680 Views
  • 1 CrossRef citations
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Open Access
Article
Social overcrowding impacts gut microbiota, promoting stress, inflammation, and dysglycemia
Clara Delaroque, Mélissa Chervy, Andrew T. Gewirtz & Benoit Chassaing
Article: 2000275
Published online: 02 Dec 2021
AbstractforSocial overcrowding impacts gut microbiota, promoting stress, inflammation, and dysglycemia | Full Text | References | PDF (1.5 MB) | EPUB | Supplemental
  • 2494 Views
  • 4 CrossRef citations
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Article
Multivariate associative patterns between the gut microbiota and large-scale brain network connectivity
N. Kohn, J. Szopinska-Tokov, A. Llera Arenas, C.F. Beckmann, A. Arias-Vasquez & E Aarts
Article: 2006586
Published online: 02 Dec 2021
AbstractforMultivariate associative patterns between the gut microbiota and large-scale brain network connectivity | Full Text | References | PDF (1.3 MB) | EPUB
  • 3429 Views
  • 5 CrossRef citations
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